RNA–Protein interactions for RNA: ENST00000617546.4

CUL4A-212, Transcript of cullin 4A, humanhuman

TSL 1 (best) BASIC

Gene CUL4A, Length 5,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL4A-212ENST00000617546 TSHZ2Q9NRE2 1034 aa13.56□□□□□ -0.24
CUL4A-212ENST00000617546 PABPN1Q86U42 306 aaKnown RBP eCLIP13.55□□□□□ -0.24
CUL4A-212ENST00000617546 IRX6P78412 446 aaPredicted RBP13.54□□□□□ -0.24
CUL4A-212ENST00000617546 WDR43Q15061 677 aaKnown RBP eCLIP13.53□□□□□ -0.24
CUL4A-212ENST00000617546 GOLGA6L22H0YM25 854 aa13.53□□□□□ -0.24
CUL4A-212ENST00000617546 L1TD1Q5T7N2 865 aaKnown RBP13.52□□□□□ -0.25
CUL4A-212ENST00000617546 MTUS2Q5JR59 1369 aa13.49□□□□□ -0.25
CUL4A-212ENST00000617546 P3H3Q8IVL6 736 aa13.49□□□□□ -0.25
CUL4A-212ENST00000617546 WRNQ14191 1432 aaPredicted RBP eCLIP13.48□□□□□ -0.251e-6■■■■■ 58.5
CUL4A-212ENST00000617546 CCNB3Q8WWL7 1395 aa13.45□□□□□ -0.26
CUL4A-212ENST00000617546 VPS8Q8N3P4 1428 aa13.44□□□□□ -0.26
CUL4A-212ENST00000617546 USP35Q9P2H5 1018 aa13.43□□□□□ -0.26
CUL4A-212ENST00000617546 NAP1L5Q96NT1 182 aaPredicted RBP13.42□□□□□ -0.26
CUL4A-212ENST00000617546 FANCIQ9NVI1 1328 aa13.41□□□□□ -0.26
CUL4A-212ENST00000617546 TCERG1O14776 1098 aaKnown RBP13.4□□□□□ -0.26
CUL4A-212ENST00000617546 NCLP19338 710 aaKnown RBP13.39□□□□□ -0.27
CUL4A-212ENST00000617546 PTMSP20962 102 aa13.39□□□□□ -0.27
CUL4A-212ENST00000617546 NACADO15069 1562 aa13.39□□□□□ -0.27
CUL4A-212ENST00000617546 KIF27Q86VH2 1401 aa13.39□□□□□ -0.27
CUL4A-212ENST00000617546 FHAD1B1AJZ9 1412 aa13.38□□□□□ -0.27
CUL4A-212ENST00000617546 BAZ1AQ9NRL2 1556 aaPredicted RBP13.38□□□□□ -0.27
CUL4A-212ENST00000617546 SETD5Q9C0A6 1442 aa13.38□□□□□ -0.27
CUL4A-212ENST00000617546 CDCA8Q53HL2 280 aa13.37□□□□□ -0.27
CUL4A-212ENST00000617546 MYH16Q9H6N6 1097 aa13.37□□□□□ -0.27
CUL4A-212ENST00000617546 LAS1LQ9Y4W2 734 aaKnown RBP13.37□□□□□ -0.27
CUL4A-212ENST00000617546 IPO9Q96P70 1041 aaKnown RBP13.36□□□□□ -0.27
CUL4A-212ENST00000617546 SALL2Q9Y467 1007 aaPredicted RBP13.35□□□□□ -0.27
CUL4A-212ENST00000617546 B4GALNT3Q6L9W6 998 aa13.34□□□□□ -0.27
CUL4A-212ENST00000617546 ZNF777Q9ULD5 760 aaPredicted RBP13.34□□□□□ -0.27
CUL4A-212ENST00000617546 MS4A1P11836 297 aa13.34□□□□□ -0.27
CUL4A-212ENST00000617546 HIRIP3Q9BW71 556 aaPredicted RBP13.34□□□□□ -0.27
CUL4A-212ENST00000617546 CHMP4BQ9H444 224 aaKnown RBP13.33□□□□□ -0.28
CUL4A-212ENST00000617546 ARID4BQ4LE39 1312 aaPredicted RBP13.32□□□□□ -0.28
CUL4A-212ENST00000617546 ARXQ96QS3 562 aa13.31□□□□□ -0.28
CUL4A-212ENST00000617546 RSPH6AQ9H0K4 717 aa13.31□□□□□ -0.28
CUL4A-212ENST00000617546 RTN4Q9NQC3 1192 aaKnown RBP13.31□□□□□ -0.28
CUL4A-212ENST00000617546 CHIC2Q9UKJ5 165 aa13.31□□□□□ -0.28
CUL4A-212ENST00000617546 CFAP44Q96MT7 982 aa13.3□□□□□ -0.28
CUL4A-212ENST00000617546 TSPY4P0CV99 314 aa13.3□□□□□ -0.28
CUL4A-212ENST00000617546 TSPY10P0CW01 314 aa13.3□□□□□ -0.28
CUL4A-212ENST00000617546 SLC24A1O60721 1099 aa13.29□□□□□ -0.28
CUL4A-212ENST00000617546 PTMAP06454 111 aaKnown RBP13.28□□□□□ -0.28
CUL4A-212ENST00000617546 CASC1Q6TDU7 716 aa13.28□□□□□ -0.28
CUL4A-212ENST00000617546 SIN3AQ96ST3 1273 aa13.26□□□□□ -0.29
CUL4A-212ENST00000617546 MSNP26038 577 aaKnown RBP13.24□□□□□ -0.29
CUL4A-212ENST00000617546 CFAP53Q96M91 514 aa13.24□□□□□ -0.29
CUL4A-212ENST00000617546 BAZ1BQ9UIG0 1483 aaKnown RBP13.23□□□□□ -0.29
CUL4A-212ENST00000617546 RRP7BPQ9NSQ0 103 aa13.23□□□□□ -0.29
CUL4A-212ENST00000617546 KNSTRNQ9Y448 316 aa13.23□□□□□ -0.29
CUL4A-212ENST00000617546 PNNQ9H307 717 aaKnown RBP13.23□□□□□ -0.29
CUL4A-212ENST00000617546 NUDCQ9Y266 331 aa13.22□□□□□ -0.29
CUL4A-212ENST00000617546 PDE3BQ13370 1112 aa13.22□□□□□ -0.29
CUL4A-212ENST00000617546 DNTTIP2Q5QJE6 756 aaKnown RBP13.22□□□□□ -0.29
CUL4A-212ENST00000617546 HSCBQ8IWL3 235 aa13.22□□□□□ -0.29
CUL4A-212ENST00000617546 CARD11Q9BXL7 1154 aa13.22□□□□□ -0.29
CUL4A-212ENST00000617546 ARHGAP35Q9NRY4 1499 aa13.21□□□□□ -0.29
CUL4A-212ENST00000617546 SOGA1O94964 1423 aa13.21□□□□□ -0.29
CUL4A-212ENST00000617546 RALBP1Q15311 655 aa13.2□□□□□ -0.3
CUL4A-212ENST00000617546 KDM2AQ9Y2K7 1162 aa13.2□□□□□ -0.3
CUL4A-212ENST00000617546 PPP1R15AO75807 674 aaPredicted RBP13.19□□□□□ -0.3
CUL4A-212ENST00000617546 RAB3GAP2Q9H2M9 1393 aa13.19□□□□□ -0.3
CUL4A-212ENST00000617546 CHAF1AQ13111 956 aaPredicted RBP13.19□□□□□ -0.3
CUL4A-212ENST00000617546 HSP90AB1P08238 724 aaKnown RBP13.18□□□□□ -0.3
CUL4A-212ENST00000617546 HSPA5P11021 654 aaKnown RBP13.18□□□□□ -0.3
CUL4A-212ENST00000617546 GBP4Q96PP9 640 aa13.18□□□□□ -0.3
CUL4A-212ENST00000617546 ROCK2O75116 1388 aaKnown RBP13.18□□□□□ -0.3
CUL4A-212ENST00000617546 CDK11BP21127 795 aaKnown RBP13.18□□□□□ -0.3
CUL4A-212ENST00000617546 FTSJ3Q8IY81 847 aaKnown RBP13.18□□□□□ -0.3
CUL4A-212ENST00000617546 DHX57Q6P158 1386 aaKnown RBP13.17□□□□□ -0.3
CUL4A-212ENST00000617546 RGS3P49796 1198 aa13.16□□□□□ -0.3
CUL4A-212ENST00000617546 RCAN3Q9UKA8 241 aa13.16□□□□□ -0.3
CUL4A-212ENST00000617546 PHLDB1Q86UU1 1377 aa13.16□□□□□ -0.3
CUL4A-212ENST00000617546 ARID3CA6NKF2 412 aa13.16□□□□□ -0.3
CUL4A-212ENST00000617546 GOLGA6L3A6NEY3 463 aa13.15□□□□□ -0.3
CUL4A-212ENST00000617546 GOLGA6L6A8MZA4 724 aa13.15□□□□□ -0.3
CUL4A-212ENST00000617546 KTN1Q86UP2 1357 aaKnown RBP13.14□□□□□ -0.31
CUL4A-212ENST00000617546 GSE1Q14687 1217 aa13.13□□□□□ -0.31
CUL4A-212ENST00000617546 ZBED9Q6R2W3 1325 aa13.13□□□□□ -0.31
CUL4A-212ENST00000617546 FBLN2P98095 1184 aa13.11□□□□□ -0.31
CUL4A-212ENST00000617546 NRDCO43847 1150 aa13.11□□□□□ -0.31
CUL4A-212ENST00000617546 TMF1P82094 1093 aa13.11□□□□□ -0.31
CUL4A-212ENST00000617546 FMN1Q68DA7 1419 aa13.1□□□□□ -0.31
CUL4A-212ENST00000617546 TOP2AP11388 1531 aaKnown RBP13.09□□□□□ -0.31
CUL4A-212ENST00000617546 CCDC88BA6NC98 1476 aa13.09□□□□□ -0.31
CUL4A-212ENST00000617546 HSP90AA2PQ14568 343 aaPredicted RBP13.08□□□□□ -0.31
CUL4A-212ENST00000617546 PMFBP1Q8TBY8 1022 aa13.08□□□□□ -0.31
CUL4A-212ENST00000617546 ZRSR1Q15695 479 aaKnown RBP13.08□□□□□ -0.32
CUL4A-212ENST00000617546 CECR2Q9BXF3 1484 aa13.06□□□□□ -0.32
CUL4A-212ENST00000617546 DDX11L8A8MPP1 907 aa13.06□□□□□ -0.32
CUL4A-212ENST00000617546 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.06□□□□□ -0.322e-7■■□□□ 14.1
CUL4A-212ENST00000617546 RWDD1Q9H446 243 aaPredicted RBP13.06□□□□□ -0.32
CUL4A-212ENST00000617546 CFDP1Q9UEE9 299 aaPredicted RBP13.05□□□□□ -0.32
CUL4A-212ENST00000617546 CARMIL1Q5VZK9 1371 aa13.05□□□□□ -0.32
CUL4A-212ENST00000617546 KIAA2012Q0VF49 1180 aa13.05□□□□□ -0.32
CUL4A-212ENST00000617546 MROH2BQ7Z745 1585 aa13.05□□□□□ -0.32
CUL4A-212ENST00000617546 SYAP1Q96A49 352 aaPredicted RBP13.05□□□□□ -0.32
CUL4A-212ENST00000617546 MAPK8IP3Q9UPT6 1336 aa13.05□□□□□ -0.32
CUL4A-212ENST00000617546 CENPQQ7L2Z9 268 aaPredicted RBP13.04□□□□□ -0.32
CUL4A-212ENST00000617546 PLEKHD1A6NEE1 506 aa13.04□□□□□ -0.32
CUL4A-212ENST00000617546 CHGAP10645 457 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms