RNA–Protein interactions for RNA: ENST00000617103.4

CLTCL1-209, Transcript of clathrin heavy chain like 1, humanhuman

TSL 1 (best)

Gene CLTCL1, Length 4,859 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-209ENST00000617103 RTN4Q9NQC3 1192 aaKnown RBP14.05□□□□□ -0.16
CLTCL1-209ENST00000617103 TNNT2P45379 298 aaPredicted RBP14.04□□□□□ -0.16
CLTCL1-209ENST00000617103 CEP162Q5TB80 1403 aa14.02□□□□□ -0.16
CLTCL1-209ENST00000617103 LAS1LQ9Y4W2 734 aaKnown RBP14.02□□□□□ -0.16
CLTCL1-209ENST00000617103 KDM2AQ9Y2K7 1162 aa14.02□□□□□ -0.17
CLTCL1-209ENST00000617103 MTUS2Q5JR59 1369 aa14.01□□□□□ -0.17
CLTCL1-209ENST00000617103 CHGAP10645 457 aaKnown RBP14□□□□□ -0.17
CLTCL1-209ENST00000617103 DEKP35659 375 aaKnown RBP14□□□□□ -0.17
CLTCL1-209ENST00000617103 MYH16Q9H6N6 1097 aa14□□□□□ -0.17
CLTCL1-209ENST00000617103 RBM19Q9Y4C8 960 aaKnown RBP13.99□□□□□ -0.17
CLTCL1-209ENST00000617103 NAP1L5Q96NT1 182 aaPredicted RBP13.99□□□□□ -0.17
CLTCL1-209ENST00000617103 EEA1Q15075 1411 aa13.98□□□□□ -0.17
CLTCL1-209ENST00000617103 NCLP19338 710 aaKnown RBP13.98□□□□□ -0.17
CLTCL1-209ENST00000617103 TSPY4P0CV99 314 aa13.95□□□□□ -0.18
CLTCL1-209ENST00000617103 TSPY10P0CW01 314 aa13.95□□□□□ -0.18
CLTCL1-209ENST00000617103 B4GALNT3Q6L9W6 998 aa13.95□□□□□ -0.18
CLTCL1-209ENST00000617103 GOLGA3Q08378 1498 aa13.94□□□□□ -0.18
CLTCL1-209ENST00000617103 SCRIBQ14160 1630 aa13.94□□□□□ -0.18
CLTCL1-209ENST00000617103 PTMAP06454 111 aaKnown RBP13.93□□□□□ -0.18
CLTCL1-209ENST00000617103 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLTCL1-209ENST00000617103 RRP7BPQ9NSQ0 103 aa13.92□□□□□ -0.18
CLTCL1-209ENST00000617103 TNIKQ9UKE5 1360 aa13.91□□□□□ -0.18
CLTCL1-209ENST00000617103 DNTTIP2Q5QJE6 756 aaKnown RBP13.9□□□□□ -0.18
CLTCL1-209ENST00000617103 SENP3-EIF4A1A0A087X0R7 540 aa13.9□□□□□ -0.19
CLTCL1-209ENST00000617103 CCER2I3L3R5 266 aa13.89□□□□□ -0.19
CLTCL1-209ENST00000617103 RGS3P49796 1198 aa13.88□□□□□ -0.19
CLTCL1-209ENST00000617103 STAG3Q9UJ98 1225 aa13.87□□□□□ -0.19
CLTCL1-209ENST00000617103 TSHZ2Q9NRE2 1034 aa13.86□□□□□ -0.19
CLTCL1-209ENST00000617103 SIN3AQ96ST3 1273 aa13.86□□□□□ -0.19
CLTCL1-209ENST00000617103 RSF1Q96T23 1441 aaPredicted RBP13.85□□□□□ -0.19
CLTCL1-209ENST00000617103 L1TD1Q5T7N2 865 aaKnown RBP13.84□□□□□ -0.19
CLTCL1-209ENST00000617103 TIMELESSQ9UNS1 1208 aa13.84□□□□□ -0.19
CLTCL1-209ENST00000617103 KNSTRNQ9Y448 316 aa13.83□□□□□ -0.2
CLTCL1-209ENST00000617103 CDCA8Q53HL2 280 aa13.82□□□□□ -0.2
CLTCL1-209ENST00000617103 FTSJ3Q8IY81 847 aaKnown RBP13.81□□□□□ -0.2
CLTCL1-209ENST00000617103 CFAP53Q96M91 514 aa13.81□□□□□ -0.2
CLTCL1-209ENST00000617103 CARD11Q9BXL7 1154 aa13.81□□□□□ -0.2
CLTCL1-209ENST00000617103 ESF1Q9H501 851 aaKnown RBP13.8□□□□□ -0.2
CLTCL1-209ENST00000617103 CASC1Q6TDU7 716 aa13.8□□□□□ -0.2
CLTCL1-209ENST00000617103 CEP164Q9UPV0 1460 aa13.77□□□□□ -0.2
CLTCL1-209ENST00000617103 ZRSR1Q15695 479 aaKnown RBP13.76□□□□□ -0.21
CLTCL1-209ENST00000617103 HSP90AB1P08238 724 aaKnown RBP13.76□□□□□ -0.21
CLTCL1-209ENST00000617103 RGL3Q3MIN7 710 aa13.76□□□□□ -0.21
CLTCL1-209ENST00000617103 FRAT1Q92837 279 aaPredicted RBP13.74□□□□□ -0.21
CLTCL1-209ENST00000617103 CDK11BP21127 795 aaKnown RBP13.74□□□□□ -0.21
CLTCL1-209ENST00000617103 MS4A1P11836 297 aa13.73□□□□□ -0.21
CLTCL1-209ENST00000617103 MSNP26038 577 aaKnown RBP13.73□□□□□ -0.21
CLTCL1-209ENST00000617103 CCNB3Q8WWL7 1395 aa13.73□□□□□ -0.21
CLTCL1-209ENST00000617103 NEUROD2Q15784 382 aa13.73□□□□□ -0.21
CLTCL1-209ENST00000617103 HSCBQ8IWL3 235 aa13.73□□□□□ -0.21
CLTCL1-209ENST00000617103 PLCB2Q00722 1185 aa13.72□□□□□ -0.21
CLTCL1-209ENST00000617103 WRNQ14191 1432 aaPredicted RBP eCLIP13.72□□□□□ -0.21
CLTCL1-209ENST00000617103 CHMP4BQ9H444 224 aaKnown RBP13.72□□□□□ -0.21
CLTCL1-209ENST00000617103 TCERG1O14776 1098 aaKnown RBP13.71□□□□□ -0.21
CLTCL1-209ENST00000617103 PNNQ9H307 717 aaKnown RBP13.7□□□□□ -0.22
CLTCL1-209ENST00000617103 IPO9Q96P70 1041 aaKnown RBP13.69□□□□□ -0.22
CLTCL1-209ENST00000617103 TPRNQ4KMQ1 711 aa13.69□□□□□ -0.22
CLTCL1-209ENST00000617103 CHAF1AQ13111 956 aaPredicted RBP13.69□□□□□ -0.22
CLTCL1-209ENST00000617103 MAPK8IP3Q9UPT6 1336 aa13.67□□□□□ -0.22
CLTCL1-209ENST00000617103 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.67□□□□□ -0.22
CLTCL1-209ENST00000617103 NUDCQ9Y266 331 aa13.67□□□□□ -0.22
CLTCL1-209ENST00000617103 NPM1P06748 294 aaKnown RBP eCLIP13.66□□□□□ -0.22
CLTCL1-209ENST00000617103 CC2D1BQ5T0F9 858 aaKnown RBP13.66□□□□□ -0.22
CLTCL1-209ENST00000617103 CFDP1Q9UEE9 299 aaPredicted RBP13.65□□□□□ -0.22
CLTCL1-209ENST00000617103 NRDCO43847 1150 aa13.65□□□□□ -0.22
CLTCL1-209ENST00000617103 PLEKHD1A6NEE1 506 aa13.64□□□□□ -0.23
CLTCL1-209ENST00000617103 GOLGA6L6A8MZA4 724 aa13.64□□□□□ -0.23
CLTCL1-209ENST00000617103 KIF27Q86VH2 1401 aa13.64□□□□□ -0.23
CLTCL1-209ENST00000617103 HSPA5P11021 654 aaKnown RBP13.64□□□□□ -0.23
CLTCL1-209ENST00000617103 RCAN3Q9UKA8 241 aa13.63□□□□□ -0.23
CLTCL1-209ENST00000617103 ARID4BQ4LE39 1312 aaPredicted RBP13.62□□□□□ -0.23
CLTCL1-209ENST00000617103 SPRYD3Q8NCJ5 442 aa13.62□□□□□ -0.23
CLTCL1-209ENST00000617103 SETD5Q9C0A6 1442 aa13.62□□□□□ -0.23
CLTCL1-209ENST00000617103 PTMSP20962 102 aa13.61□□□□□ -0.23
CLTCL1-209ENST00000617103 GBP4Q96PP9 640 aa13.61□□□□□ -0.23
CLTCL1-209ENST00000617103 USP35Q9P2H5 1018 aa13.6□□□□□ -0.23
CLTCL1-209ENST00000617103 TMF1P82094 1093 aa13.59□□□□□ -0.23
CLTCL1-209ENST00000617103 CFAP44Q96MT7 982 aa13.59□□□□□ -0.23
CLTCL1-209ENST00000617103 SLKQ9H2G2 1235 aaPredicted RBP13.59□□□□□ -0.23
CLTCL1-209ENST00000617103 GOLGA6L4A6NEF3 574 aa13.58□□□□□ -0.24
CLTCL1-209ENST00000617103 CHMP7Q8WUX9 453 aaPredicted RBP13.58□□□□□ -0.24
CLTCL1-209ENST00000617103 GZF1Q9H116 711 aaPredicted RBP13.58□□□□□ -0.24
CLTCL1-209ENST00000617103 GOLGA6L3A6NEY3 463 aa13.58□□□□□ -0.24
CLTCL1-209ENST00000617103 VPS8Q8N3P4 1428 aa13.57□□□□□ -0.24
CLTCL1-209ENST00000617103 FHAD1B1AJZ9 1412 aa13.57□□□□□ -0.24
CLTCL1-209ENST00000617103 KIAA2012Q0VF49 1180 aa13.55□□□□□ -0.24
CLTCL1-209ENST00000617103 RB1CC1Q8TDY2 1594 aa13.55□□□□□ -0.24
CLTCL1-209ENST00000617103 DCAF11Q8TEB1 546 aa13.55□□□□□ -0.24
CLTCL1-209ENST00000617103 U2SURPO15042 1029 aaKnown RBP13.54□□□□□ -0.24
CLTCL1-209ENST00000617103 KTN1Q86UP2 1357 aaKnown RBP13.54□□□□□ -0.24
CLTCL1-209ENST00000617103 PPP1R15AO75807 674 aaPredicted RBP13.54□□□□□ -0.24
CLTCL1-209ENST00000617103 MCCP23508 829 aa13.54□□□□□ -0.24
CLTCL1-209ENST00000617103 RSPH6AQ9H0K4 717 aa13.53□□□□□ -0.24
CLTCL1-209ENST00000617103 FGD1P98174 961 aa13.53□□□□□ -0.24
CLTCL1-209ENST00000617103 KCNJ4P48050 445 aa13.53□□□□□ -0.24
CLTCL1-209ENST00000617103 RALBP1Q15311 655 aa13.53□□□□□ -0.24
CLTCL1-209ENST00000617103 FANCIQ9NVI1 1328 aa13.52□□□□□ -0.24
CLTCL1-209ENST00000617103 RWDD1Q9H446 243 aaPredicted RBP13.52□□□□□ -0.24
CLTCL1-209ENST00000617103 DRC7Q8IY82 874 aa13.51□□□□□ -0.25
CLTCL1-209ENST00000617103 KCNH8Q96L42 1107 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms