RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 CD44P16070 742 aaKnown RBP9.91□□□□□ -0.82
CKS1BP3-201ENST00000600888 HAX1O00165 279 aa9.9□□□□□ -0.82
CKS1BP3-201ENST00000600888 ZRANB1Q9UGI0 708 aa9.88□□□□□ -0.83
CKS1BP3-201ENST00000600888 ECM2O94769 699 aaPredicted RBP9.87□□□□□ -0.83
CKS1BP3-201ENST00000600888 TRIM41Q8WV44 630 aa9.87□□□□□ -0.83
CKS1BP3-201ENST00000600888 CCDC61Q9Y6R9 512 aa9.86□□□□□ -0.83
CKS1BP3-201ENST00000600888 CHRM1P11229 460 aaPredicted RBP9.84□□□□□ -0.83
CKS1BP3-201ENST00000600888 PYGBP11216 843 aa9.83□□□□□ -0.84
CKS1BP3-201ENST00000600888 EVX2Q03828 476 aa9.83□□□□□ -0.84
CKS1BP3-201ENST00000600888 ZNF579Q8NAF0 562 aaKnown RBP9.79□□□□□ -0.84
CKS1BP3-201ENST00000600888 KIF12Q96FN5 646 aa9.78□□□□□ -0.84
CKS1BP3-201ENST00000600888 PHF12Q96QT6 1004 aa9.78□□□□□ -0.84
CKS1BP3-201ENST00000600888 RGL2O15211 777 aa9.77□□□□□ -0.85
CKS1BP3-201ENST00000600888 MAP3K13O43283 966 aa9.75□□□□□ -0.85
CKS1BP3-201ENST00000600888 RNF25Q96BH1 459 aaPredicted RBP9.74□□□□□ -0.85
CKS1BP3-201ENST00000600888 SGIP1Q9BQI5 828 aa9.73□□□□□ -0.85
CKS1BP3-201ENST00000600888 PCDHB13Q9Y5F0 798 aa9.72□□□□□ -0.85
CKS1BP3-201ENST00000600888 RIOK3O14730 519 aaKnown RBP9.71□□□□□ -0.86
CKS1BP3-201ENST00000600888 ZNF467Q7Z7K2 595 aaPredicted RBP9.7□□□□□ -0.86
CKS1BP3-201ENST00000600888 PCDHB8Q9UN66 801 aa9.7□□□□□ -0.86
CKS1BP3-201ENST00000600888 DCAF8L2P0C7V8 631 aa9.69□□□□□ -0.86
CKS1BP3-201ENST00000600888 CLCN6P51797 869 aa9.69□□□□□ -0.86
CKS1BP3-201ENST00000600888 IFNL1Q8IU54 200 aa9.68□□□□□ -0.86
CKS1BP3-201ENST00000600888 MS4A3Q96HJ5 214 aa9.67□□□□□ -0.86
CKS1BP3-201ENST00000600888 TAOK2Q9UL54 1235 aa9.66□□□□□ -0.86
CKS1BP3-201ENST00000600888 VGFO15240 615 aaPredicted RBP9.65□□□□□ -0.86
CKS1BP3-201ENST00000600888 GALR2O43603 387 aaPredicted RBP9.64□□□□□ -0.87
CKS1BP3-201ENST00000600888 GABBR2O75899 941 aa9.64□□□□□ -0.87
CKS1BP3-201ENST00000600888 PDAP1Q13442 181 aaKnown RBP9.62□□□□□ -0.87
CKS1BP3-201ENST00000600888 SP7Q8TDD2 431 aaPredicted RBP9.62□□□□□ -0.87
CKS1BP3-201ENST00000600888 PSEN1P49768 467 aa9.61□□□□□ -0.87
CKS1BP3-201ENST00000600888 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.6□□□□□ -0.87
CKS1BP3-201ENST00000600888 ZFP91Q96JP5 570 aaPredicted RBP9.6□□□□□ -0.87
CKS1BP3-201ENST00000600888 TRPC6Q9Y210 931 aa9.6□□□□□ -0.87
CKS1BP3-201ENST00000600888 CHGAP10645 457 aaKnown RBP9.59□□□□□ -0.87
CKS1BP3-201ENST00000600888 STK25O00506 426 aa9.57□□□□□ -0.88
CKS1BP3-201ENST00000600888 HS6ST3Q8IZP7 471 aa9.56□□□□□ -0.88
CKS1BP3-201ENST00000600888 TIE1P35590 1138 aa9.55□□□□□ -0.88
CKS1BP3-201ENST00000600888 BCL11BQ9C0K0 894 aaPredicted RBP9.55□□□□□ -0.88
CKS1BP3-201ENST00000600888 TMEM106CQ9BVX2 250 aa9.54□□□□□ -0.88
CKS1BP3-201ENST00000600888 STK24Q9Y6E0 443 aa9.54□□□□□ -0.88
CKS1BP3-201ENST00000600888 BMP2KQ9NSY1 1161 aaPredicted RBP9.53□□□□□ -0.88
CKS1BP3-201ENST00000600888 TTLL13PA6NNM8 815 aa9.51□□□□□ -0.89
CKS1BP3-201ENST00000600888 BBXQ8WY36 941 aaPredicted RBP9.49□□□□□ -0.89
CKS1BP3-201ENST00000600888 DCBLD2Q96PD2 775 aa9.49□□□□□ -0.89
CKS1BP3-201ENST00000600888 DNAJC5Q9H3Z4 198 aa9.49□□□□□ -0.89
CKS1BP3-201ENST00000600888 ATMINO43313 823 aaPredicted RBP9.48□□□□□ -0.89
CKS1BP3-201ENST00000600888 ASTLQ6HA08 431 aaPredicted RBP9.48□□□□□ -0.89
CKS1BP3-201ENST00000600888 CABP2Q9NPB3 220 aa9.48□□□□□ -0.89
CKS1BP3-201ENST00000600888 ATN1P54259 1190 aaPredicted RBP9.47□□□□□ -0.89
CKS1BP3-201ENST00000600888 TRIM35Q9UPQ4 493 aa9.45□□□□□ -0.9
CKS1BP3-201ENST00000600888 POTEIP0CG38 1075 aa9.44□□□□□ -0.9
CKS1BP3-201ENST00000600888 GOLGA2Q08379 1002 aa9.44□□□□□ -0.9
CKS1BP3-201ENST00000600888 EFCAB3Q8N7B9 438 aa9.44□□□□□ -0.9
CKS1BP3-201ENST00000600888 NKX1-1Q15270 411 aaPredicted RBP9.43□□□□□ -0.9
CKS1BP3-201ENST00000600888 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.43□□□□□ -0.9
CKS1BP3-201ENST00000600888 PELP1Q8IZL8 1130 aaKnown RBP9.42□□□□□ -0.9
CKS1BP3-201ENST00000600888 MKRN3Q13064 507 aaKnown RBP9.41□□□□□ -0.9
CKS1BP3-201ENST00000600888 SOX12O15370 315 aa9.4□□□□□ -0.9
CKS1BP3-201ENST00000600888 SPRYD3Q8NCJ5 442 aa9.37□□□□□ -0.91
CKS1BP3-201ENST00000600888 MFRPQ9BY79 579 aa9.37□□□□□ -0.91
CKS1BP3-201ENST00000600888 IER5LQ5T953 404 aa9.36□□□□□ -0.91
CKS1BP3-201ENST00000600888 PAXIP1Q6ZW49 1069 aaPredicted RBP9.36□□□□□ -0.91
CKS1BP3-201ENST00000600888 PHF8Q9UPP1 1060 aa9.36□□□□□ -0.91
CKS1BP3-201ENST00000600888 GTPBP6O43824 516 aaPredicted RBP9.35□□□□□ -0.91
CKS1BP3-201ENST00000600888 NLRP6P59044 892 aa9.35□□□□□ -0.91
CKS1BP3-201ENST00000600888 PLCB2Q00722 1185 aa9.34□□□□□ -0.91
CKS1BP3-201ENST00000600888 FBXO22Q8NEZ5 403 aa9.34□□□□□ -0.91
CKS1BP3-201ENST00000600888 SLC39A7Q92504 469 aa9.34□□□□□ -0.91
CKS1BP3-201ENST00000600888 CFAP44Q96MT7 982 aa9.34□□□□□ -0.91
CKS1BP3-201ENST00000600888 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.34□□□□□ -0.91
CKS1BP3-201ENST00000600888 C7P10643 843 aa9.33□□□□□ -0.92
CKS1BP3-201ENST00000600888 ILDR1Q86SU0 546 aaPredicted RBP9.33□□□□□ -0.92
CKS1BP3-201ENST00000600888 RYDENQ9NUL5 291 aaKnown RBP9.33□□□□□ -0.92
CKS1BP3-201ENST00000600888 IRX5P78411 483 aaPredicted RBP9.32□□□□□ -0.92
CKS1BP3-201ENST00000600888 MS4A4AQ96JQ5 239 aa9.31□□□□□ -0.92
CKS1BP3-201ENST00000600888 OCEL1Q9H607 264 aa9.31□□□□□ -0.92
CKS1BP3-201ENST00000600888 METRNQ9UJH8 293 aa9.3□□□□□ -0.92
CKS1BP3-201ENST00000600888 COLQQ9Y215 455 aaPredicted RBP9.29□□□□□ -0.92
CKS1BP3-201ENST00000600888 SEC24BO95487 1268 aa9.28□□□□□ -0.92
CKS1BP3-201ENST00000600888 PLCG2P16885 1265 aa9.28□□□□□ -0.92
CKS1BP3-201ENST00000600888 PDCD7Q8N8D1 485 aaKnown RBP9.28□□□□□ -0.92
CKS1BP3-201ENST00000600888 POTEFA5A3E0 1075 aa9.27□□□□□ -0.93
CKS1BP3-201ENST00000600888 PPP1R37O75864 691 aa9.26□□□□□ -0.93
CKS1BP3-201ENST00000600888 DPY19L2Q6NUT2 758 aa9.26□□□□□ -0.93
CKS1BP3-201ENST00000600888 HAP1P54257 671 aaPredicted RBP9.19□□□□□ -0.94
CKS1BP3-201ENST00000600888 L3MBTL3Q96JM7 780 aaPredicted RBP9.19□□□□□ -0.94
CKS1BP3-201ENST00000600888 TSHZ2Q9NRE2 1034 aa9.19□□□□□ -0.94
CKS1BP3-201ENST00000600888 BOLA1Q9Y3E2 137 aa9.18□□□□□ -0.94
CKS1BP3-201ENST00000600888 TMEM121BQ9BXQ6 578 aaPredicted RBP9.16□□□□□ -0.94
CKS1BP3-201ENST00000600888 G3V3G9 751 aa9.15□□□□□ -0.94
CKS1BP3-201ENST00000600888 POTEB2H3BUK9 544 aa9.15□□□□□ -0.94
CKS1BP3-201ENST00000600888 MICALL2Q8IY33 904 aa9.15□□□□□ -0.94
CKS1BP3-201ENST00000600888 SLC24A1O60721 1099 aa9.12□□□□□ -0.95
CKS1BP3-201ENST00000600888 POTEJP0CG39 1038 aa9.11□□□□□ -0.95
CKS1BP3-201ENST00000600888 CADPS2Q86UW7 1296 aa9.11□□□□□ -0.95
CKS1BP3-201ENST00000600888 C3orf67Q6ZVT6 689 aa9.06□□□□□ -0.96
CKS1BP3-201ENST00000600888 VSIG10Q8N0Z9 540 aa9.06□□□□□ -0.96
CKS1BP3-201ENST00000600888 PDE4AP27815 886 aa9.05□□□□□ -0.96
CKS1BP3-201ENST00000600888 LHX8Q68G74 356 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms