RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 EEA1Q15075 1411 aa27.12■■□□□ 1.93
UPF1-207ENST00000599848 ZCCHC6Q5VYS8 1495 aaKnown RBP27.1■■□□□ 1.93
UPF1-207ENST00000599848 CFDP1Q9UEE9 299 aaPredicted RBP27.06■■□□□ 1.92
UPF1-207ENST00000599848 NPHP1O15259 732 aa27.05■■□□□ 1.92
UPF1-207ENST00000599848 EIF4G2P78344 907 aaKnown RBP eCLIP27.03■■□□□ 1.926e-13■■■■□ 20.9
UPF1-207ENST00000599848 HNRNPUQ00839 825 aaKnown RBP eCLIP27.03■■□□□ 1.92
UPF1-207ENST00000599848 FAM9BQ8IZU0 186 aa27.02■■□□□ 1.92
UPF1-207ENST00000599848 BAZ1BQ9UIG0 1483 aaKnown RBP27■■□□□ 1.91
UPF1-207ENST00000599848 POGKQ9P215 609 aa26.98■■□□□ 1.91
UPF1-207ENST00000599848 NACADO15069 1562 aa26.98■■□□□ 1.91
UPF1-207ENST00000599848 KANK1Q14678 1352 aa26.97■■□□□ 1.91
UPF1-207ENST00000599848 NUDCQ9Y266 331 aa26.97■■□□□ 1.91
UPF1-207ENST00000599848 ARXQ96QS3 562 aa26.97■■□□□ 1.91
UPF1-207ENST00000599848 CLIP1P30622 1438 aa26.95■■□□□ 1.9
UPF1-207ENST00000599848 KIF27Q86VH2 1401 aa26.95■■□□□ 1.9
UPF1-207ENST00000599848 PLEKHG5O94827 1062 aa26.94■■□□□ 1.9
UPF1-207ENST00000599848 CHMP4BQ9H444 224 aaKnown RBP26.94■■□□□ 1.9
UPF1-207ENST00000599848 LMOD2Q6P5Q4 547 aa26.93■■□□□ 1.9
UPF1-207ENST00000599848 PNNQ9H307 717 aaKnown RBP26.92■■□□□ 1.9
UPF1-207ENST00000599848 MRS2Q9HD23 443 aa26.91■■□□□ 1.9
UPF1-207ENST00000599848 KNSTRNQ9Y448 316 aa26.89■■□□□ 1.89
UPF1-207ENST00000599848 NCLP19338 710 aaKnown RBP26.88■■□□□ 1.89
UPF1-207ENST00000599848 CCDC136Q96JN2 1154 aa26.86■■□□□ 1.89
UPF1-207ENST00000599848 MAPK8IP3Q9UPT6 1336 aa26.86■■□□□ 1.89
UPF1-207ENST00000599848 CASC1Q6TDU7 716 aa26.86■■□□□ 1.89
UPF1-207ENST00000599848 DDX10Q13206 875 aaKnown RBP26.85■■□□□ 1.89
UPF1-207ENST00000599848 SALL2Q9Y467 1007 aaPredicted RBP26.85■■□□□ 1.89
UPF1-207ENST00000599848 RRP7BPQ9NSQ0 103 aa26.84■■□□□ 1.89
UPF1-207ENST00000599848 GTF3C3Q9Y5Q9 886 aa26.83■■□□□ 1.89
UPF1-207ENST00000599848 GOLGA3Q08378 1498 aa26.79■■□□□ 1.88
UPF1-207ENST00000599848 ZRSR1Q15695 479 aaKnown RBP26.78■■□□□ 1.88
UPF1-207ENST00000599848 RGL3Q3MIN7 710 aa26.77■■□□□ 1.88
UPF1-207ENST00000599848 MS4A1P11836 297 aa26.74■■□□□ 1.87
UPF1-207ENST00000599848 GOLGA2Q08379 1002 aa26.73■■□□□ 1.87
UPF1-207ENST00000599848 WRNQ14191 1432 aaPredicted RBP eCLIP26.73■■□□□ 1.877e-10■■■■■ 33.4
UPF1-207ENST00000599848 ANP32EQ9BTT0 268 aa26.72■■□□□ 1.87
UPF1-207ENST00000599848 PPM1GO15355 546 aaPredicted RBP26.72■■□□□ 1.87
UPF1-207ENST00000599848 GOLGA6L22H0YM25 854 aa26.7■■□□□ 1.86
UPF1-207ENST00000599848 BECN1Q14457 450 aa26.7■■□□□ 1.86
UPF1-207ENST00000599848 CCNB3Q8WWL7 1395 aa26.7■■□□□ 1.86
UPF1-207ENST00000599848 CARMIL2Q6F5E8 1435 aa26.66■■□□□ 1.86
UPF1-207ENST00000599848 FKBP8Q14318 412 aa26.66■■□□□ 1.86
UPF1-207ENST00000599848 CHMP4AQ9BY43 222 aa26.66■■□□□ 1.86
UPF1-207ENST00000599848 CARD11Q9BXL7 1154 aa26.65■■□□□ 1.86
UPF1-207ENST00000599848 TMX4Q9H1E5 349 aaPredicted RBP26.63■■□□□ 1.85
UPF1-207ENST00000599848 FTSJ3Q8IY81 847 aaKnown RBP26.62■■□□□ 1.85
UPF1-207ENST00000599848 FHAD1B1AJZ9 1412 aa26.61■■□□□ 1.85
UPF1-207ENST00000599848 SENP3Q9H4L4 574 aaPredicted RBP26.61■■□□□ 1.85
UPF1-207ENST00000599848 PDS5BQ9NTI5 1447 aa26.57■■□□□ 1.84
UPF1-207ENST00000599848 CEP164Q9UPV0 1460 aa26.56■■□□□ 1.84
UPF1-207ENST00000599848 MLECQ14165 292 aa26.55■■□□□ 1.84
UPF1-207ENST00000599848 DDRGK1Q96HY6 314 aa26.55■■□□□ 1.84
UPF1-207ENST00000599848 DCAF1Q9Y4B6 1507 aa26.54■■□□□ 1.84
UPF1-207ENST00000599848 OS9Q13438 667 aaPredicted RBP26.54■■□□□ 1.84
UPF1-207ENST00000599848 TMF1P82094 1093 aa26.48■■□□□ 1.83
UPF1-207ENST00000599848 CFAP44Q96MT7 982 aa26.46■■□□□ 1.83
UPF1-207ENST00000599848 LAS1LQ9Y4W2 734 aaKnown RBP26.45■■□□□ 1.82
UPF1-207ENST00000599848 HDGFL2Q7Z4V5 671 aaPredicted RBP26.45■■□□□ 1.82
UPF1-207ENST00000599848 FGD1P98174 961 aa26.44■■□□□ 1.82
UPF1-207ENST00000599848 EFCAB2Q5VUJ9 269 aa26.43■■□□□ 1.82
UPF1-207ENST00000599848 EID1Q9Y6B2 187 aa26.43■■□□□ 1.82
UPF1-207ENST00000599848 BAZ1AQ9NRL2 1556 aaPredicted RBP26.43■■□□□ 1.82
UPF1-207ENST00000599848 SRPK2P78362 688 aaKnown RBP26.42■■□□□ 1.82
UPF1-207ENST00000599848 RTF1Q92541 710 aaKnown RBP26.42■■□□□ 1.82
UPF1-207ENST00000599848 EIF4G1Q04637 1599 aaKnown RBP26.37■■□□□ 1.81
UPF1-207ENST00000599848 U2SURPO15042 1029 aaKnown RBP26.37■■□□□ 1.81
UPF1-207ENST00000599848 CSB-PGBD3P0DP91 1061 aa26.37■■□□□ 1.81
UPF1-207ENST00000599848 CALD1Q05682 793 aaKnown RBP26.36■■□□□ 1.81
UPF1-207ENST00000599848 KCNJ4P48050 445 aa26.36■■□□□ 1.81
UPF1-207ENST00000599848 GOLGA6L6A8MZA4 724 aa26.35■■□□□ 1.81
UPF1-207ENST00000599848 HDAC5Q9UQL6 1122 aa26.35■■□□□ 1.81
UPF1-207ENST00000599848 CARMIL1Q5VZK9 1371 aa26.35■■□□□ 1.81
UPF1-207ENST00000599848 GGT6Q6P531 493 aa26.35■■□□□ 1.81
UPF1-207ENST00000599848 CEP162Q5TB80 1403 aa26.34■■□□□ 1.81
UPF1-207ENST00000599848 TNIKQ9UKE5 1360 aa26.33■■□□□ 1.81
UPF1-207ENST00000599848 NRDCO43847 1150 aa26.33■■□□□ 1.81
UPF1-207ENST00000599848 GLIPR1L2Q4G1C9 344 aa26.31■■□□□ 1.8
UPF1-207ENST00000599848 TULP1O00294 542 aaPredicted RBP26.29■■□□□ 1.8
UPF1-207ENST00000599848 CCDC9Q9Y3X0 531 aaKnown RBP26.29■■□□□ 1.8
UPF1-207ENST00000599848 CUX2O14529 1486 aa26.27■■□□□ 1.8
UPF1-207ENST00000599848 NEUROD2Q15784 382 aa26.26■■□□□ 1.79
UPF1-207ENST00000599848 MORC1Q86VD1 984 aa26.25■■□□□ 1.79
UPF1-207ENST00000599848 RSPH4AQ5TD94 716 aa26.24■■□□□ 1.79
UPF1-207ENST00000599848 TRIM44Q96DX7 344 aaPredicted RBP26.24■■□□□ 1.79
UPF1-207ENST00000599848 MCCP23508 829 aa26.24■■□□□ 1.79
UPF1-207ENST00000599848 TIMELESSQ9UNS1 1208 aa26.23■■□□□ 1.79
UPF1-207ENST00000599848 AEBP2Q6ZN18 517 aaPredicted RBP26.22■■□□□ 1.79
UPF1-207ENST00000599848 PAK3O75914 559 aaPredicted RBP26.2■■□□□ 1.78
UPF1-207ENST00000599848 ISY1Q9ULR0 285 aaKnown RBP26.2■■□□□ 1.78
UPF1-207ENST00000599848 DCAF11Q8TEB1 546 aa26.19■■□□□ 1.78
UPF1-207ENST00000599848 L1TD1Q5T7N2 865 aaKnown RBP26.18■■□□□ 1.78
UPF1-207ENST00000599848 EIF3AQ14152 1382 aaKnown RBP26.18■■□□□ 1.78
UPF1-207ENST00000599848 PTMAP06454 111 aaKnown RBP26.17■■□□□ 1.78
UPF1-207ENST00000599848 SMARCA2P51531 1590 aa26.16■■□□□ 1.78
UPF1-207ENST00000599848 TNNT2P45379 298 aaPredicted RBP26.15■■□□□ 1.78
UPF1-207ENST00000599848 IPO8O15397 1037 aaKnown RBP26.15■■□□□ 1.78
UPF1-207ENST00000599848 G3V3G9 751 aa26.13■■□□□ 1.77
UPF1-207ENST00000599848 DCAF8Q5TAQ9 597 aa26.13■■□□□ 1.77
UPF1-207ENST00000599848 NAP1L2Q9ULW6 460 aaPredicted RBP26.13■■□□□ 1.77
UPF1-207ENST00000599848 SOX12O15370 315 aa26.12■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms