RNA–Protein interactions for RNA: ENST00000591877.1

VMP1-213, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 791 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-213ENST00000591877 POTEMA6NI47 508 aa16.31■□□□□ 0.2
VMP1-213ENST00000591877 METRNQ9UJH8 293 aa16.29■□□□□ 0.2
VMP1-213ENST00000591877 ASTLQ6HA08 431 aaPredicted RBP16.28■□□□□ 0.2
VMP1-213ENST00000591877 ATMINO43313 823 aaPredicted RBP16.27■□□□□ 0.2
VMP1-213ENST00000591877 POTEGQ6S5H5 508 aa16.25■□□□□ 0.19
VMP1-213ENST00000591877 TSPYL2Q9H2G4 693 aaPredicted RBP16.25■□□□□ 0.19
VMP1-213ENST00000591877 POTEJP0CG39 1038 aa16.22■□□□□ 0.19
VMP1-213ENST00000591877 SLC39A7Q92504 469 aa16.22■□□□□ 0.19
VMP1-213ENST00000591877 C7P10643 843 aa16.2■□□□□ 0.18
VMP1-213ENST00000591877 ATN1P54259 1190 aaPredicted RBP16.13■□□□□ 0.17
VMP1-213ENST00000591877 CCDC61Q9Y6R9 512 aa16.13■□□□□ 0.17
VMP1-213ENST00000591877 MAMSTRQ6ZN01 415 aa16.08■□□□□ 0.16
VMP1-213ENST00000591877 PROM2Q8N271 834 aa16.08■□□□□ 0.16
VMP1-213ENST00000591877 KIF12Q96FN5 646 aa16.07■□□□□ 0.16
VMP1-213ENST00000591877 TRPC6Q9Y210 931 aa16.05■□□□□ 0.16
VMP1-213ENST00000591877 FAM163AQ96GL9 167 aaPredicted RBP16.02■□□□□ 0.16
VMP1-213ENST00000591877 BMP2KQ9NSY1 1161 aaPredicted RBP16.01■□□□□ 0.15
VMP1-213ENST00000591877 SCUBE2Q9NQ36 999 aa16■□□□□ 0.15
VMP1-213ENST00000591877 POTEFA5A3E0 1075 aa15.99■□□□□ 0.15
VMP1-213ENST00000591877 LCE2DQ5TA82 110 aaPredicted RBP15.99■□□□□ 0.15
VMP1-213ENST00000591877 MAP3K13O43283 966 aa15.98■□□□□ 0.15
VMP1-213ENST00000591877 MIER1Q8N108 512 aa15.95■□□□□ 0.14
VMP1-213ENST00000591877 PCDH10Q9P2E7 1040 aa15.95■□□□□ 0.14
VMP1-213ENST00000591877 RASEFQ8IZ41 740 aa15.94■□□□□ 0.14
VMP1-213ENST00000591877 PLEKHG5O94827 1062 aa15.91■□□□□ 0.14
VMP1-213ENST00000591877 TIE1P35590 1138 aa15.9■□□□□ 0.14
VMP1-213ENST00000591877 COLQQ9Y215 455 aaPredicted RBP15.85■□□□□ 0.13
VMP1-213ENST00000591877 TTLL13PA6NNM8 815 aa15.84■□□□□ 0.13
VMP1-213ENST00000591877 SEC24BO95487 1268 aa15.83■□□□□ 0.12
VMP1-213ENST00000591877 AMER1Q5JTC6 1135 aaPredicted RBP15.83■□□□□ 0.12
VMP1-213ENST00000591877 PLCD3Q8N3E9 789 aa15.76■□□□□ 0.11
VMP1-213ENST00000591877 TRIM35Q9UPQ4 493 aa15.75■□□□□ 0.11
VMP1-213ENST00000591877 PCDHB13Q9Y5F0 798 aa15.75■□□□□ 0.11
VMP1-213ENST00000591877 FKBP8Q14318 412 aa15.72■□□□□ 0.11
VMP1-213ENST00000591877 RTN4Q9NQC3 1192 aaKnown RBP15.69■□□□□ 0.1
VMP1-213ENST00000591877 RB1CC1Q8TDY2 1594 aa15.68■□□□□ 0.1
VMP1-213ENST00000591877 SGIP1Q9BQI5 828 aa15.67■□□□□ 0.1
VMP1-213ENST00000591877 NUBP1P53384 320 aa15.66■□□□□ 0.1
VMP1-213ENST00000591877 IER5LQ5T953 404 aa15.66■□□□□ 0.1
VMP1-213ENST00000591877 IFNL1Q8IU54 200 aa15.65■□□□□ 0.1
VMP1-213ENST00000591877 CDAN1Q8IWY9 1227 aa15.64■□□□□ 0.09
VMP1-213ENST00000591877 SLAIN1Q8ND83 568 aa15.61■□□□□ 0.09
VMP1-213ENST00000591877 NACADO15069 1562 aa15.61■□□□□ 0.09
VMP1-213ENST00000591877 TMEM106CQ9BVX2 250 aa15.6■□□□□ 0.09
VMP1-213ENST00000591877 ZBTB47Q9UFB7 747 aaPredicted RBP15.58■□□□□ 0.08
VMP1-213ENST00000591877 ST18O60284 1047 aa15.55■□□□□ 0.08
VMP1-213ENST00000591877 FAM212AQ96EL1 285 aa15.54■□□□□ 0.08
VMP1-213ENST00000591877 SLC24A1O60721 1099 aa15.53■□□□□ 0.08
VMP1-213ENST00000591877 PLCG2P16885 1265 aa15.53■□□□□ 0.08
VMP1-213ENST00000591877 DCAF8L2P0C7V8 631 aa15.52■□□□□ 0.08
VMP1-213ENST00000591877 IRX5P78411 483 aaPredicted RBP15.47■□□□□ 0.07
VMP1-213ENST00000591877 MYO15BQ96JP2 1530 aa15.45■□□□□ 0.06
VMP1-213ENST00000591877 UNC13AQ9UPW8 1703 aa15.43■□□□□ 0.06
VMP1-213ENST00000591877 PYGBP11216 843 aa15.42■□□□□ 0.06
VMP1-213ENST00000591877 DCAF8Q5TAQ9 597 aa15.41■□□□□ 0.06
VMP1-213ENST00000591877 ZCCHC6Q5VYS8 1495 aaKnown RBP15.4■□□□□ 0.06
VMP1-213ENST00000591877 OCEL1Q9H607 264 aa15.38■□□□□ 0.05
VMP1-213ENST00000591877 PCDHB8Q9UN66 801 aa15.36■□□□□ 0.05
VMP1-213ENST00000591877 DCAF1Q9Y4B6 1507 aa15.32■□□□□ 0.04
VMP1-213ENST00000591877 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.31■□□□□ 0.04
VMP1-213ENST00000591877 BICRAQ9NZM4 1560 aa15.28■□□□□ 0.04
VMP1-213ENST00000591877 MARVELD3Q96A59 401 aa15.28■□□□□ 0.04
VMP1-213ENST00000591877 SNPHO15079 494 aa15.26■□□□□ 0.03
VMP1-213ENST00000591877 TMEM121BQ9BXQ6 578 aaPredicted RBP15.26■□□□□ 0.03
VMP1-213ENST00000591877 MMRN1Q13201 1228 aa15.25■□□□□ 0.03
VMP1-213ENST00000591877 SPNS2Q8IVW8 549 aa15.25■□□□□ 0.03
VMP1-213ENST00000591877 PDCD7Q8N8D1 485 aaKnown RBP15.18■□□□□ 0.02
VMP1-213ENST00000591877 GOLGA2Q08379 1002 aa15.13■□□□□ 0.01
VMP1-213ENST00000591877 C3orf67Q6ZVT6 689 aa15.13■□□□□ 0.01
VMP1-213ENST00000591877 MKRN3Q13064 507 aaKnown RBP15.12■□□□□ 0.01
VMP1-213ENST00000591877 SCRIBQ14160 1630 aa15.11■□□□□ 0.01
VMP1-213ENST00000591877 ZNF467Q7Z7K2 595 aaPredicted RBP15.1■□□□□ 0.01
VMP1-213ENST00000591877 KLHL34Q8N239 644 aa15.1■□□□□ 0.01
VMP1-213ENST00000591877 FBXO3Q9UK99 471 aa15.1■□□□□ 0.01
VMP1-213ENST00000591877 EMP3P54852 163 aa15.09■□□□□ 0.01
VMP1-213ENST00000591877 L3MBTL3Q96JM7 780 aaPredicted RBP15.09■□□□□ 0.01
VMP1-213ENST00000591877 GSE1Q14687 1217 aa15.07■□□□□ 0
VMP1-213ENST00000591877 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.06■□□□□ 01e-12■□□□□ 9.3
VMP1-213ENST00000591877 POTEB3A0JP26 581 aa15.03■□□□□ -0
VMP1-213ENST00000591877 POTEBQ6S5H4 581 aa15.03■□□□□ -0
VMP1-213ENST00000591877 PSEN1P49768 467 aa15.02■□□□□ -0
VMP1-213ENST00000591877 FAM205CA6NFA0 338 aa15.01□□□□□ -0.01
VMP1-213ENST00000591877 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
VMP1-213ENST00000591877 HS3ST6Q96QI5 342 aa15□□□□□ -0.01
VMP1-213ENST00000591877 VASPP50552 380 aaPredicted RBP14.98□□□□□ -0.01
VMP1-213ENST00000591877 KRTAP3-3Q9BYR6 98 aa14.98□□□□□ -0.01
VMP1-213ENST00000591877 KRTAP3-2Q9BYR7 98 aa14.98□□□□□ -0.01
VMP1-213ENST00000591877 CHRM1P11229 460 aaPredicted RBP14.97□□□□□ -0.01
VMP1-213ENST00000591877 DPY19L2Q6NUT2 758 aa14.97□□□□□ -0.01
VMP1-213ENST00000591877 PDAP1Q13442 181 aaKnown RBP14.88□□□□□ -0.03
VMP1-213ENST00000591877 ILDR1Q86SU0 546 aaPredicted RBP14.88□□□□□ -0.03
VMP1-213ENST00000591877 CABP2Q9NPB3 220 aa14.88□□□□□ -0.03
VMP1-213ENST00000591877 EIF4G1Q04637 1599 aaKnown RBP14.85□□□□□ -0.03
VMP1-213ENST00000591877 CC2D2AQ9P2K1 1620 aa14.85□□□□□ -0.03
VMP1-213ENST00000591877 G3V3G9 751 aa14.84□□□□□ -0.03
VMP1-213ENST00000591877 HOXB3P14651 431 aaPredicted RBP14.83□□□□□ -0.04
VMP1-213ENST00000591877 BOLA1Q9Y3E2 137 aa14.83□□□□□ -0.04
VMP1-213ENST00000591877 CIZ1Q9ULV3 898 aaPredicted RBP14.8□□□□□ -0.04
VMP1-213ENST00000591877 ZNF710Q8N1W2 664 aa14.77□□□□□ -0.05
VMP1-213ENST00000591877 CECR2Q9BXF3 1484 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms