RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, humanhuman

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-219ENST00000589349 C19orf67A6NJJ6 358 aa16.16■□□□□ 0.18
DNMT1-219ENST00000589349 PAK3O75914 559 aaPredicted RBP16.15■□□□□ 0.18
DNMT1-219ENST00000589349 NUBP1P53384 320 aa16.15■□□□□ 0.18
DNMT1-219ENST00000589349 CD44P16070 742 aaKnown RBP16.14■□□□□ 0.17
DNMT1-219ENST00000589349 BICRAQ9NZM4 1560 aa16.13■□□□□ 0.17
DNMT1-219ENST00000589349 FAM212AQ96EL1 285 aa16.11■□□□□ 0.17
DNMT1-219ENST00000589349 RASEFQ8IZ41 740 aa16.1■□□□□ 0.17
DNMT1-219ENST00000589349 TSPYL2Q9H2G4 693 aaPredicted RBP16.05■□□□□ 0.16
DNMT1-219ENST00000589349 GSE1Q14687 1217 aa16.04■□□□□ 0.16
DNMT1-219ENST00000589349 DCAF8Q5TAQ9 597 aa16.03■□□□□ 0.16
DNMT1-219ENST00000589349 ZRANB1Q9UGI0 708 aa16.03■□□□□ 0.16
DNMT1-219ENST00000589349 CIZ1Q9ULV3 898 aaPredicted RBP15.98■□□□□ 0.15
DNMT1-219ENST00000589349 EVX2Q03828 476 aa15.94■□□□□ 0.14
DNMT1-219ENST00000589349 ZNF579Q8NAF0 562 aaKnown RBP15.94■□□□□ 0.14
DNMT1-219ENST00000589349 CCDC61Q9Y6R9 512 aa15.93■□□□□ 0.14
DNMT1-219ENST00000589349 SHROOM4Q9ULL8 1493 aa15.91■□□□□ 0.14
DNMT1-219ENST00000589349 TRIM41Q8WV44 630 aa15.89■□□□□ 0.13
DNMT1-219ENST00000589349 CLCN6P51797 869 aa15.86■□□□□ 0.13
DNMT1-219ENST00000589349 PHF12Q96QT6 1004 aa15.84■□□□□ 0.13
DNMT1-219ENST00000589349 AMER1Q5JTC6 1135 aaPredicted RBP15.83■□□□□ 0.12
DNMT1-219ENST00000589349 SP7Q8TDD2 431 aaPredicted RBP15.82■□□□□ 0.12
DNMT1-219ENST00000589349 CC2D2AQ9P2K1 1620 aa15.81■□□□□ 0.12
DNMT1-219ENST00000589349 CECR2Q9BXF3 1484 aa15.8■□□□□ 0.12
DNMT1-219ENST00000589349 PYGBP11216 843 aa15.8■□□□□ 0.12
DNMT1-219ENST00000589349 EIF4G1Q04637 1599 aaKnown RBP15.79■□□□□ 0.12
DNMT1-219ENST00000589349 CHRM1P11229 460 aaPredicted RBP15.79■□□□□ 0.12
DNMT1-219ENST00000589349 KIF12Q96FN5 646 aa15.78■□□□□ 0.12
DNMT1-219ENST00000589349 PKD2Q13563 968 aa15.77■□□□□ 0.12
DNMT1-219ENST00000589349 SGIP1Q9BQI5 828 aa15.75■□□□□ 0.11
DNMT1-219ENST00000589349 ECM2O94769 699 aaPredicted RBP15.74■□□□□ 0.11
DNMT1-219ENST00000589349 MAP3K13O43283 966 aa15.72■□□□□ 0.11
DNMT1-219ENST00000589349 PCDHB13Q9Y5F0 798 aa15.72■□□□□ 0.11
DNMT1-219ENST00000589349 GABBR2O75899 941 aa15.7■□□□□ 0.1
DNMT1-219ENST00000589349 ZNF467Q7Z7K2 595 aaPredicted RBP15.67■□□□□ 0.1
DNMT1-219ENST00000589349 MS4A3Q96HJ5 214 aa15.67■□□□□ 0.1
DNMT1-219ENST00000589349 RTN4Q9NQC3 1192 aaKnown RBP15.67■□□□□ 0.1
DNMT1-219ENST00000589349 GALR2O43603 387 aaPredicted RBP15.63■□□□□ 0.09
DNMT1-219ENST00000589349 IFNL1Q8IU54 200 aa15.61■□□□□ 0.09
DNMT1-219ENST00000589349 RIOK3O14730 519 aaKnown RBP15.58■□□□□ 0.08
DNMT1-219ENST00000589349 PCDHB8Q9UN66 801 aa15.58■□□□□ 0.08
DNMT1-219ENST00000589349 TAOK2Q9UL54 1235 aa15.56■□□□□ 0.08
DNMT1-219ENST00000589349 RGL2O15211 777 aa15.54■□□□□ 0.08
DNMT1-219ENST00000589349 RNF25Q96BH1 459 aaPredicted RBP15.54■□□□□ 0.08
DNMT1-219ENST00000589349 DCBLD2Q96PD2 775 aa15.51■□□□□ 0.07
DNMT1-219ENST00000589349 TIE1P35590 1138 aa15.5■□□□□ 0.07
DNMT1-219ENST00000589349 PDAP1Q13442 181 aaKnown RBP15.5■□□□□ 0.07
DNMT1-219ENST00000589349 VGFO15240 615 aaPredicted RBP15.49■□□□□ 0.07
DNMT1-219ENST00000589349 DNAJC5Q9H3Z4 198 aa15.47■□□□□ 0.07
DNMT1-219ENST00000589349 PSEN1P49768 467 aa15.46■□□□□ 0.07
DNMT1-219ENST00000589349 TRPC6Q9Y210 931 aa15.46■□□□□ 0.07
DNMT1-219ENST00000589349 TMEM106CQ9BVX2 250 aa15.42■□□□□ 0.06
DNMT1-219ENST00000589349 BMP2KQ9NSY1 1161 aaPredicted RBP15.42■□□□□ 0.06
DNMT1-219ENST00000589349 ASTLQ6HA08 431 aaPredicted RBP15.4■□□□□ 0.06
DNMT1-219ENST00000589349 TTLL13PA6NNM8 815 aa15.39■□□□□ 0.05
DNMT1-219ENST00000589349 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.37■□□□□ 0.05
DNMT1-219ENST00000589349 ATMINO43313 823 aaPredicted RBP15.37■□□□□ 0.05
DNMT1-219ENST00000589349 ZFP91Q96JP5 570 aaPredicted RBP15.37■□□□□ 0.05
DNMT1-219ENST00000589349 SMARCA4P51532 1647 aa15.35■□□□□ 0.05
DNMT1-219ENST00000589349 ATAD2BQ9ULI0 1458 aa15.35■□□□□ 0.05
DNMT1-219ENST00000589349 NCAPD3P42695 1498 aa15.33■□□□□ 0.05
DNMT1-219ENST00000589349 BAZ1AQ9NRL2 1556 aaPredicted RBP15.33■□□□□ 0.05
DNMT1-219ENST00000589349 ATN1P54259 1190 aaPredicted RBP15.33■□□□□ 0.04
DNMT1-219ENST00000589349 SMARCA2P51531 1590 aa15.32■□□□□ 0.04
DNMT1-219ENST00000589349 STK25O00506 426 aa15.32■□□□□ 0.04
DNMT1-219ENST00000589349 POTEIP0CG38 1075 aa15.32■□□□□ 0.04
DNMT1-219ENST00000589349 GOLGA2Q08379 1002 aa15.31■□□□□ 0.04
DNMT1-219ENST00000589349 TRIM35Q9UPQ4 493 aa15.3■□□□□ 0.04
DNMT1-219ENST00000589349 BCL11BQ9C0K0 894 aaPredicted RBP15.29■□□□□ 0.04
DNMT1-219ENST00000589349 BAZ1BQ9UIG0 1483 aaKnown RBP15.28■□□□□ 0.04
DNMT1-219ENST00000589349 STK24Q9Y6E0 443 aa15.28■□□□□ 0.04
DNMT1-219ENST00000589349 HS6ST3Q8IZP7 471 aa15.27■□□□□ 0.04
DNMT1-219ENST00000589349 CHGAP10645 457 aaKnown RBP15.26■□□□□ 0.03
DNMT1-219ENST00000589349 CABP2Q9NPB3 220 aa15.26■□□□□ 0.03
DNMT1-219ENST00000589349 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
DNMT1-219ENST00000589349 SLC39A7Q92504 469 aa15.24■□□□□ 0.03
DNMT1-219ENST00000589349 ERCC6Q03468 1493 aa15.24■□□□□ 0.03
DNMT1-219ENST00000589349 MKRN3Q13064 507 aaKnown RBP15.23■□□□□ 0.03
DNMT1-219ENST00000589349 IER5LQ5T953 404 aa15.22■□□□□ 0.03
DNMT1-219ENST00000589349 PELP1Q8IZL8 1130 aaKnown RBP15.22■□□□□ 0.03
DNMT1-219ENST00000589349 HMGXB3Q12766 1538 aa15.21■□□□□ 0.03
DNMT1-219ENST00000589349 C7P10643 843 aa15.19■□□□□ 0.02
DNMT1-219ENST00000589349 EFCAB3Q8N7B9 438 aa15.15■□□□□ 0.02
DNMT1-219ENST00000589349 METRNQ9UJH8 293 aa15.15■□□□□ 0.02
DNMT1-219ENST00000589349 SOX12O15370 315 aa15.13■□□□□ 0.01
DNMT1-219ENST00000589349 NESP48681 1621 aa15.12■□□□□ 0.01
DNMT1-219ENST00000589349 SEC24BO95487 1268 aa15.11■□□□□ 0.01
DNMT1-219ENST00000589349 PEG3Q9GZU2 1588 aa15.11■□□□□ 0.01
DNMT1-219ENST00000589349 PLCG2P16885 1265 aa15.08■□□□□ 0
DNMT1-219ENST00000589349 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.08■□□□□ 0
DNMT1-219ENST00000589349 WIZO95785 1651 aa15.08■□□□□ 0
DNMT1-219ENST00000589349 IRX5P78411 483 aaPredicted RBP15.07■□□□□ 0
DNMT1-219ENST00000589349 OCEL1Q9H607 264 aa15.07■□□□□ 0
DNMT1-219ENST00000589349 NLRP6P59044 892 aa15.04■□□□□ -0
DNMT1-219ENST00000589349 BBXQ8WY36 941 aaPredicted RBP15.04■□□□□ -0
DNMT1-219ENST00000589349 ILDR1Q86SU0 546 aaPredicted RBP15.02■□□□□ -0
DNMT1-219ENST00000589349 RYDENQ9NUL5 291 aaKnown RBP15.01□□□□□ -0.01
DNMT1-219ENST00000589349 PHF8Q9UPP1 1060 aa15.01□□□□□ -0.01
DNMT1-219ENST00000589349 COLQQ9Y215 455 aaPredicted RBP15.01□□□□□ -0.01
DNMT1-219ENST00000589349 RSF1Q96T23 1441 aaPredicted RBP15□□□□□ -0.01
DNMT1-219ENST00000589349 MFRPQ9BY79 579 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms