RNA–Protein interactions for RNA: ENST00000585448.1

SMAD4-203, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-203ENST00000585448 CCDC61Q9Y6R9 512 aa12.43□□□□□ -0.42
SMAD4-203ENST00000585448 CHRM1P11229 460 aaPredicted RBP12.42□□□□□ -0.42
SMAD4-203ENST00000585448 CIZ1Q9ULV3 898 aaPredicted RBP12.41□□□□□ -0.42
SMAD4-203ENST00000585448 TSPYL2Q9H2G4 693 aaPredicted RBP12.38□□□□□ -0.43
SMAD4-203ENST00000585448 HAX1O00165 279 aa12.37□□□□□ -0.43
SMAD4-203ENST00000585448 ZNF579Q8NAF0 562 aaKnown RBP12.37□□□□□ -0.43
SMAD4-203ENST00000585448 ZRANB1Q9UGI0 708 aa12.36□□□□□ -0.43
SMAD4-203ENST00000585448 CLCN6P51797 869 aa12.34□□□□□ -0.43
SMAD4-203ENST00000585448 SGIP1Q9BQI5 828 aa12.33□□□□□ -0.44
SMAD4-203ENST00000585448 ECM2O94769 699 aaPredicted RBP12.32□□□□□ -0.44
SMAD4-203ENST00000585448 EVX2Q03828 476 aa12.27□□□□□ -0.45
SMAD4-203ENST00000585448 KIF12Q96FN5 646 aa12.27□□□□□ -0.45
SMAD4-203ENST00000585448 PYGBP11216 843 aa12.26□□□□□ -0.45
SMAD4-203ENST00000585448 ZNF467Q7Z7K2 595 aaPredicted RBP12.23□□□□□ -0.45
SMAD4-203ENST00000585448 RNF25Q96BH1 459 aaPredicted RBP12.22□□□□□ -0.45
SMAD4-203ENST00000585448 PHF12Q96QT6 1004 aa12.22□□□□□ -0.45
SMAD4-203ENST00000585448 RGL2O15211 777 aa12.21□□□□□ -0.45
SMAD4-203ENST00000585448 MAP3K13O43283 966 aa12.2□□□□□ -0.46
SMAD4-203ENST00000585448 RIOK3O14730 519 aaKnown RBP12.19□□□□□ -0.46
SMAD4-203ENST00000585448 TAOK2Q9UL54 1235 aa12.19□□□□□ -0.46
SMAD4-203ENST00000585448 PCDHB13Q9Y5F0 798 aa12.19□□□□□ -0.46
SMAD4-203ENST00000585448 VGFO15240 615 aaPredicted RBP12.14□□□□□ -0.47
SMAD4-203ENST00000585448 IFNL1Q8IU54 200 aa12.14□□□□□ -0.47
SMAD4-203ENST00000585448 SP7Q8TDD2 431 aaPredicted RBP12.13□□□□□ -0.47
SMAD4-203ENST00000585448 MS4A3Q96HJ5 214 aa12.12□□□□□ -0.47
SMAD4-203ENST00000585448 GABBR2O75899 941 aa12.09□□□□□ -0.47
SMAD4-203ENST00000585448 PDAP1Q13442 181 aaKnown RBP12.09□□□□□ -0.47
SMAD4-203ENST00000585448 PCDHB8Q9UN66 801 aa12.08□□□□□ -0.48
SMAD4-203ENST00000585448 GALR2O43603 387 aaPredicted RBP12.07□□□□□ -0.48
SMAD4-203ENST00000585448 TIE1P35590 1138 aa12.06□□□□□ -0.48
SMAD4-203ENST00000585448 DNAJC5Q9H3Z4 198 aa12.04□□□□□ -0.48
SMAD4-203ENST00000585448 HS6ST3Q8IZP7 471 aa12.03□□□□□ -0.48
SMAD4-203ENST00000585448 PSEN1P49768 467 aa12.02□□□□□ -0.49
SMAD4-203ENST00000585448 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.01□□□□□ -0.49
SMAD4-203ENST00000585448 ZFP91Q96JP5 570 aaPredicted RBP12.01□□□□□ -0.49
SMAD4-203ENST00000585448 TRPC6Q9Y210 931 aa11.98□□□□□ -0.49
SMAD4-203ENST00000585448 ASTLQ6HA08 431 aaPredicted RBP11.97□□□□□ -0.49
SMAD4-203ENST00000585448 DCAF8L2P0C7V8 631 aa11.96□□□□□ -0.49
SMAD4-203ENST00000585448 STK25O00506 426 aa11.95□□□□□ -0.5
SMAD4-203ENST00000585448 BMP2KQ9NSY1 1161 aaPredicted RBP11.95□□□□□ -0.5
SMAD4-203ENST00000585448 TTLL13PA6NNM8 815 aa11.94□□□□□ -0.5
SMAD4-203ENST00000585448 CHGAP10645 457 aaKnown RBP11.94□□□□□ -0.5
SMAD4-203ENST00000585448 TMEM106CQ9BVX2 250 aa11.94□□□□□ -0.5
SMAD4-203ENST00000585448 BCL11BQ9C0K0 894 aaPredicted RBP11.94□□□□□ -0.5
SMAD4-203ENST00000585448 ATMINO43313 823 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-203ENST00000585448 BBXQ8WY36 941 aaPredicted RBP11.9□□□□□ -0.5
SMAD4-203ENST00000585448 STK24Q9Y6E0 443 aa11.9□□□□□ -0.5
SMAD4-203ENST00000585448 DCBLD2Q96PD2 775 aa11.89□□□□□ -0.51
SMAD4-203ENST00000585448 ATN1P54259 1190 aaPredicted RBP11.86□□□□□ -0.51
SMAD4-203ENST00000585448 TRIM35Q9UPQ4 493 aa11.85□□□□□ -0.51
SMAD4-203ENST00000585448 SOX12O15370 315 aa11.84□□□□□ -0.51
SMAD4-203ENST00000585448 IER5LQ5T953 404 aa11.84□□□□□ -0.51
SMAD4-203ENST00000585448 CABP2Q9NPB3 220 aa11.84□□□□□ -0.51
SMAD4-203ENST00000585448 POTEIP0CG38 1075 aa11.83□□□□□ -0.52
SMAD4-203ENST00000585448 ILDR1Q86SU0 546 aaPredicted RBP11.82□□□□□ -0.52
SMAD4-203ENST00000585448 GOLGA2Q08379 1002 aa11.81□□□□□ -0.52
SMAD4-203ENST00000585448 NKX1-1Q15270 411 aaPredicted RBP11.8□□□□□ -0.52
SMAD4-203ENST00000585448 EFCAB3Q8N7B9 438 aa11.8□□□□□ -0.52
SMAD4-203ENST00000585448 RYDENQ9NUL5 291 aaKnown RBP11.8□□□□□ -0.52
SMAD4-203ENST00000585448 MKRN3Q13064 507 aaKnown RBP11.79□□□□□ -0.52
SMAD4-203ENST00000585448 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.79□□□□□ -0.52
SMAD4-203ENST00000585448 SLC39A7Q92504 469 aa11.78□□□□□ -0.52
SMAD4-203ENST00000585448 PELP1Q8IZL8 1130 aaKnown RBP11.77□□□□□ -0.53
SMAD4-203ENST00000585448 MFRPQ9BY79 579 aa11.76□□□□□ -0.53
SMAD4-203ENST00000585448 C7P10643 843 aa11.75□□□□□ -0.53
SMAD4-203ENST00000585448 NLRP6P59044 892 aa11.74□□□□□ -0.53
SMAD4-203ENST00000585448 IRX5P78411 483 aaPredicted RBP11.74□□□□□ -0.53
SMAD4-203ENST00000585448 FBXO22Q8NEZ5 403 aa11.74□□□□□ -0.53
SMAD4-203ENST00000585448 GTPBP6O43824 516 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-203ENST00000585448 SPRYD3Q8NCJ5 442 aa11.69□□□□□ -0.54
SMAD4-203ENST00000585448 OCEL1Q9H607 264 aa11.69□□□□□ -0.54
SMAD4-203ENST00000585448 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.69□□□□□ -0.54
SMAD4-203ENST00000585448 PHF8Q9UPP1 1060 aa11.69□□□□□ -0.54
SMAD4-203ENST00000585448 PLCB2Q00722 1185 aa11.68□□□□□ -0.54
SMAD4-203ENST00000585448 PDCD7Q8N8D1 485 aaKnown RBP11.68□□□□□ -0.54
SMAD4-203ENST00000585448 METRNQ9UJH8 293 aa11.68□□□□□ -0.54
SMAD4-203ENST00000585448 MS4A4AQ96JQ5 239 aa11.66□□□□□ -0.54
SMAD4-203ENST00000585448 POTEFA5A3E0 1075 aa11.64□□□□□ -0.55
SMAD4-203ENST00000585448 PLCG2P16885 1265 aa11.64□□□□□ -0.55
SMAD4-203ENST00000585448 PAXIP1Q6ZW49 1069 aaPredicted RBP11.62□□□□□ -0.55
SMAD4-203ENST00000585448 SEC24BO95487 1268 aa11.61□□□□□ -0.55
SMAD4-203ENST00000585448 COLQQ9Y215 455 aaPredicted RBP11.61□□□□□ -0.55
SMAD4-203ENST00000585448 CFAP44Q96MT7 982 aa11.58□□□□□ -0.56
SMAD4-203ENST00000585448 L3MBTL3Q96JM7 780 aaPredicted RBP11.56□□□□□ -0.56
SMAD4-203ENST00000585448 TMEM121BQ9BXQ6 578 aaPredicted RBP11.56□□□□□ -0.56
SMAD4-203ENST00000585448 PPP1R37O75864 691 aa11.54□□□□□ -0.56
SMAD4-203ENST00000585448 DPY19L2Q6NUT2 758 aa11.53□□□□□ -0.56
SMAD4-203ENST00000585448 BOLA1Q9Y3E2 137 aa11.51□□□□□ -0.57
SMAD4-203ENST00000585448 MICALL2Q8IY33 904 aa11.49□□□□□ -0.57
SMAD4-203ENST00000585448 G3V3G9 751 aa11.45□□□□□ -0.58
SMAD4-203ENST00000585448 POTEB2H3BUK9 544 aa11.45□□□□□ -0.58
SMAD4-203ENST00000585448 POTEJP0CG39 1038 aa11.41□□□□□ -0.58
SMAD4-203ENST00000585448 MAMSTRQ6ZN01 415 aa11.41□□□□□ -0.58
SMAD4-203ENST00000585448 TSHZ2Q9NRE2 1034 aa11.4□□□□□ -0.58
SMAD4-203ENST00000585448 HAP1P54257 671 aaPredicted RBP11.38□□□□□ -0.59
SMAD4-203ENST00000585448 CRISPLD2Q9H0B8 497 aa11.38□□□□□ -0.59
SMAD4-203ENST00000585448 SLC24A1O60721 1099 aa11.37□□□□□ -0.59
SMAD4-203ENST00000585448 C3orf67Q6ZVT6 689 aa11.37□□□□□ -0.59
SMAD4-203ENST00000585448 KIF3CO14782 793 aa11.36□□□□□ -0.59
SMAD4-203ENST00000585448 LHX8Q68G74 356 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms