RNA–Protein interactions for RNA: ENST00000576979.1

CTNS-210, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

TSL 5

Gene CTNS, Length 548 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-210ENST00000576979 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
CTNS-210ENST00000576979 ASTLQ6HA08 431 aaPredicted RBP12.64□□□□□ -0.39
CTNS-210ENST00000576979 LCE2DQ5TA82 110 aaPredicted RBP12.59□□□□□ -0.39
CTNS-210ENST00000576979 SLC39A7Q92504 469 aa12.57□□□□□ -0.4
CTNS-210ENST00000576979 C7P10643 843 aa12.56□□□□□ -0.4
CTNS-210ENST00000576979 TSPYL2Q9H2G4 693 aaPredicted RBP12.53□□□□□ -0.4
CTNS-210ENST00000576979 ATN1P54259 1190 aaPredicted RBP12.52□□□□□ -0.41
CTNS-210ENST00000576979 FAM163AQ96GL9 167 aaPredicted RBP12.5□□□□□ -0.41
CTNS-210ENST00000576979 PCDH10Q9P2E7 1040 aa12.48□□□□□ -0.41
CTNS-210ENST00000576979 POTEFA5A3E0 1075 aa12.47□□□□□ -0.41
CTNS-210ENST00000576979 MAMSTRQ6ZN01 415 aa12.47□□□□□ -0.41
CTNS-210ENST00000576979 TRPC6Q9Y210 931 aa12.47□□□□□ -0.41
CTNS-210ENST00000576979 CCDC61Q9Y6R9 512 aa12.46□□□□□ -0.41
CTNS-210ENST00000576979 KIF12Q96FN5 646 aa12.42□□□□□ -0.42
CTNS-210ENST00000576979 SCUBE2Q9NQ36 999 aa12.42□□□□□ -0.42
CTNS-210ENST00000576979 BMP2KQ9NSY1 1161 aaPredicted RBP12.42□□□□□ -0.42
CTNS-210ENST00000576979 EHMT2Q96KQ7 1210 aa12.37□□□□□ -0.43
CTNS-210ENST00000576979 MAP3K13O43283 966 aa12.34□□□□□ -0.43
CTNS-210ENST00000576979 COLQQ9Y215 455 aaPredicted RBP12.34□□□□□ -0.43
CTNS-210ENST00000576979 PROM2Q8N271 834 aa12.3□□□□□ -0.44
CTNS-210ENST00000576979 RASEFQ8IZ41 740 aa12.29□□□□□ -0.44
CTNS-210ENST00000576979 TIE1P35590 1138 aa12.27□□□□□ -0.45
CTNS-210ENST00000576979 TTLL13PA6NNM8 815 aa12.26□□□□□ -0.45
CTNS-210ENST00000576979 SEC24BO95487 1268 aa12.23□□□□□ -0.45
CTNS-210ENST00000576979 CDAN1Q8IWY9 1227 aa12.23□□□□□ -0.45
CTNS-210ENST00000576979 TRIM35Q9UPQ4 493 aa12.18□□□□□ -0.46
CTNS-210ENST00000576979 MIER1Q8N108 512 aa12.17□□□□□ -0.46
CTNS-210ENST00000576979 ST18O60284 1047 aa12.13□□□□□ -0.47
CTNS-210ENST00000576979 SLAIN1Q8ND83 568 aa12.12□□□□□ -0.47
CTNS-210ENST00000576979 PCDHB13Q9Y5F0 798 aa12.12□□□□□ -0.47
CTNS-210ENST00000576979 IER5LQ5T953 404 aa12.1□□□□□ -0.47
CTNS-210ENST00000576979 PLEKHG5O94827 1062 aa12.09□□□□□ -0.47
CTNS-210ENST00000576979 IFNL1Q8IU54 200 aa12.07□□□□□ -0.48
CTNS-210ENST00000576979 SGIP1Q9BQI5 828 aa12.03□□□□□ -0.48
CTNS-210ENST00000576979 TMEM106CQ9BVX2 250 aa12.03□□□□□ -0.48
CTNS-210ENST00000576979 NUBP1P53384 320 aa12.02□□□□□ -0.49
CTNS-210ENST00000576979 PLCD3Q8N3E9 789 aa12.01□□□□□ -0.49
CTNS-210ENST00000576979 PLCG2P16885 1265 aa11.99□□□□□ -0.49
CTNS-210ENST00000576979 IRX5P78411 483 aaPredicted RBP11.97□□□□□ -0.49
CTNS-210ENST00000576979 MMRN1Q13201 1228 aa11.97□□□□□ -0.49
CTNS-210ENST00000576979 SPNS2Q8IVW8 549 aa11.96□□□□□ -0.49
CTNS-210ENST00000576979 MARVELD3Q96A59 401 aa11.93□□□□□ -0.5
CTNS-210ENST00000576979 FAM212AQ96EL1 285 aa11.88□□□□□ -0.51
CTNS-210ENST00000576979 OCEL1Q9H607 264 aa11.86□□□□□ -0.51
CTNS-210ENST00000576979 TMEM121BQ9BXQ6 578 aaPredicted RBP11.85□□□□□ -0.51
CTNS-210ENST00000576979 PYGBP11216 843 aa11.83□□□□□ -0.52
CTNS-210ENST00000576979 ZBTB47Q9UFB7 747 aaPredicted RBP11.83□□□□□ -0.52
CTNS-210ENST00000576979 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.82□□□□□ -0.52
CTNS-210ENST00000576979 PCDHB8Q9UN66 801 aa11.82□□□□□ -0.52
CTNS-210ENST00000576979 SNPHO15079 494 aa11.78□□□□□ -0.52
CTNS-210ENST00000576979 POTEB3A0JP26 581 aa11.76□□□□□ -0.53
CTNS-210ENST00000576979 POTEBQ6S5H4 581 aa11.76□□□□□ -0.53
CTNS-210ENST00000576979 DCAF8Q5TAQ9 597 aa11.75□□□□□ -0.53
CTNS-210ENST00000576979 PDCD7Q8N8D1 485 aaKnown RBP11.74□□□□□ -0.53
CTNS-210ENST00000576979 EMP3P54852 163 aa11.73□□□□□ -0.53
CTNS-210ENST00000576979 KRTAP3-3Q9BYR6 98 aa11.72□□□□□ -0.53
CTNS-210ENST00000576979 KRTAP3-2Q9BYR7 98 aa11.72□□□□□ -0.53
CTNS-210ENST00000576979 HS3ST6Q96QI5 342 aa11.68□□□□□ -0.54
CTNS-210ENST00000576979 FAM205CA6NFA0 338 aa11.67□□□□□ -0.54
CTNS-210ENST00000576979 C3orf67Q6ZVT6 689 aa11.67□□□□□ -0.54
CTNS-210ENST00000576979 FKBP8Q14318 412 aa11.6□□□□□ -0.55
CTNS-210ENST00000576979 MKRN3Q13064 507 aaKnown RBP11.59□□□□□ -0.55
CTNS-210ENST00000576979 L3MBTL3Q96JM7 780 aaPredicted RBP11.58□□□□□ -0.56
CTNS-210ENST00000576979 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.58□□□□□ -0.56
CTNS-210ENST00000576979 NISCHQ9Y2I1 1504 aa11.58□□□□□ -0.56
CTNS-210ENST00000576979 GOLGA2Q08379 1002 aa11.57□□□□□ -0.56
CTNS-210ENST00000576979 DPY19L2Q6NUT2 758 aa11.56□□□□□ -0.56
CTNS-210ENST00000576979 ZNF467Q7Z7K2 595 aaPredicted RBP11.53□□□□□ -0.56
CTNS-210ENST00000576979 HOXB3P14651 431 aaPredicted RBP11.51□□□□□ -0.57
CTNS-210ENST00000576979 PSEN1P49768 467 aa11.51□□□□□ -0.57
CTNS-210ENST00000576979 ILDR1Q86SU0 546 aaPredicted RBP11.48□□□□□ -0.57
CTNS-210ENST00000576979 GSE1Q14687 1217 aa11.45□□□□□ -0.58
CTNS-210ENST00000576979 KLHL34Q8N239 644 aa11.44□□□□□ -0.58
CTNS-210ENST00000576979 CHRM1P11229 460 aaPredicted RBP11.42□□□□□ -0.58
CTNS-210ENST00000576979 BOLA1Q9Y3E2 137 aa11.42□□□□□ -0.58
CTNS-210ENST00000576979 CABP2Q9NPB3 220 aa11.41□□□□□ -0.58
CTNS-210ENST00000576979 HOXB1P14653 301 aaPredicted RBP11.4□□□□□ -0.58
CTNS-210ENST00000576979 ERBB3P21860 1342 aa11.38□□□□□ -0.59
CTNS-210ENST00000576979 ZNF710Q8N1W2 664 aa11.38□□□□□ -0.59
CTNS-210ENST00000576979 RNF166Q96A37 237 aaPredicted RBP11.38□□□□□ -0.59
CTNS-210ENST00000576979 PDAP1Q13442 181 aaKnown RBP11.37□□□□□ -0.59
CTNS-210ENST00000576979 FBXO3Q9UK99 471 aa11.37□□□□□ -0.59
CTNS-210ENST00000576979 VASPP50552 380 aaPredicted RBP11.36□□□□□ -0.59
CTNS-210ENST00000576979 G3V3G9 751 aa11.34□□□□□ -0.59
CTNS-210ENST00000576979 VARS2Q5ST30 1063 aaKnown RBP11.34□□□□□ -0.59
CTNS-210ENST00000576979 DOK7Q18PE1 504 aa11.32□□□□□ -0.6
CTNS-210ENST00000576979 MYT1LQ9UL68 1186 aa11.29□□□□□ -0.6
CTNS-210ENST00000576979 TMEM92Q6UXU6 159 aa11.26□□□□□ -0.61
CTNS-210ENST00000576979 CIZ1Q9ULV3 898 aaPredicted RBP11.23□□□□□ -0.61
CTNS-210ENST00000576979 EFCAB3Q8N7B9 438 aa11.22□□□□□ -0.61
CTNS-210ENST00000576979 RIMBP2O15034 1052 aa11.21□□□□□ -0.61
CTNS-210ENST00000576979 ZNF687Q8N1G0 1237 aa11.21□□□□□ -0.61
CTNS-210ENST00000576979 GPR153Q6NV75 609 aa11.18□□□□□ -0.62
CTNS-210ENST00000576979 MICALL2Q8IY33 904 aa11.18□□□□□ -0.62
CTNS-210ENST00000576979 IFNLR1Q8IU57 520 aaPredicted RBP11.16□□□□□ -0.62
CTNS-210ENST00000576979 SPOCK2Q92563 424 aa11.15□□□□□ -0.62
CTNS-210ENST00000576979 ANKRD13DQ6ZTN6 518 aa11.13□□□□□ -0.63
CTNS-210ENST00000576979 ZSWIM6Q9HCJ5 1215 aa11.13□□□□□ -0.63
CTNS-210ENST00000576979 ARSIQ5FYB1 569 aa11.12□□□□□ -0.63
CTNS-210ENST00000576979 KHSRPQ92945 711 aaKnown RBP eCLIP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms