RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 SCRIBQ14160 1630 aa12.08□□□□□ -0.48
USP3-215ENST00000559771 ATXN8OSP0DMR3 200 aa12.08□□□□□ -0.48
USP3-215ENST00000559771 SHROOM4Q9ULL8 1493 aa12.08□□□□□ -0.48
USP3-215ENST00000559771 ZBTB22O15209 634 aa12.07□□□□□ -0.48
USP3-215ENST00000559771 CC2D2AQ9P2K1 1620 aa12.03□□□□□ -0.48
USP3-215ENST00000559771 FAM163AQ96GL9 167 aaPredicted RBP11.99□□□□□ -0.49
USP3-215ENST00000559771 SLC4A1APQ9BWU0 796 aaKnown RBP11.99□□□□□ -0.49
USP3-215ENST00000559771 EIF4G1Q04637 1599 aaKnown RBP11.99□□□□□ -0.49
USP3-215ENST00000559771 CECR2Q9BXF3 1484 aa11.95□□□□□ -0.5
USP3-215ENST00000559771 PHF12Q96QT6 1004 aa11.93□□□□□ -0.5
USP3-215ENST00000559771 METRNQ9UJH8 293 aa11.92□□□□□ -0.5
USP3-215ENST00000559771 CREBZFQ9NS37 354 aa11.91□□□□□ -0.5
USP3-215ENST00000559771 ASTLQ6HA08 431 aaPredicted RBP11.88□□□□□ -0.51
USP3-215ENST00000559771 CDAN1Q8IWY9 1227 aa11.85□□□□□ -0.51
USP3-215ENST00000559771 ATMINO43313 823 aaPredicted RBP11.84□□□□□ -0.51
USP3-215ENST00000559771 C7P10643 843 aa11.84□□□□□ -0.51
USP3-215ENST00000559771 MAMSTRQ6ZN01 415 aa11.84□□□□□ -0.51
USP3-215ENST00000559771 SLC39A7Q92504 469 aa11.81□□□□□ -0.52
USP3-215ENST00000559771 POTEFA5A3E0 1075 aa11.76□□□□□ -0.53
USP3-215ENST00000559771 MS4A3Q96HJ5 214 aa11.73□□□□□ -0.53
USP3-215ENST00000559771 SCUBE2Q9NQ36 999 aa11.71□□□□□ -0.53
USP3-215ENST00000559771 MMRN1Q13201 1228 aa11.7□□□□□ -0.54
USP3-215ENST00000559771 ATN1P54259 1190 aaPredicted RBP11.65□□□□□ -0.54
USP3-215ENST00000559771 PAK3O75914 559 aaPredicted RBP11.64□□□□□ -0.55
USP3-215ENST00000559771 MNX1P50219 401 aaPredicted RBP11.64□□□□□ -0.55
USP3-215ENST00000559771 SPNS2Q8IVW8 549 aa11.63□□□□□ -0.55
USP3-215ENST00000559771 NCAPD3P42695 1498 aa11.58□□□□□ -0.56
USP3-215ENST00000559771 ST18O60284 1047 aa11.55□□□□□ -0.56
USP3-215ENST00000559771 ATAD2BQ9ULI0 1458 aa11.55□□□□□ -0.56
USP3-215ENST00000559771 SMARCA4P51532 1647 aa11.53□□□□□ -0.56
USP3-215ENST00000559771 COLQQ9Y215 455 aaPredicted RBP11.51□□□□□ -0.57
USP3-215ENST00000559771 HMGXB3Q12766 1538 aa11.5□□□□□ -0.57
USP3-215ENST00000559771 DNAJC5Q9H3Z4 198 aa11.49□□□□□ -0.57
USP3-215ENST00000559771 TRPC6Q9Y210 931 aa11.49□□□□□ -0.57
USP3-215ENST00000559771 BMP2KQ9NSY1 1161 aaPredicted RBP11.48□□□□□ -0.57
USP3-215ENST00000559771 SMARCA2P51531 1590 aa11.48□□□□□ -0.57
USP3-215ENST00000559771 STAG3Q9UJ98 1225 aa11.47□□□□□ -0.57
USP3-215ENST00000559771 NPM1P06748 294 aaKnown RBP eCLIP11.45□□□□□ -0.58
USP3-215ENST00000559771 BAZ1AQ9NRL2 1556 aaPredicted RBP11.45□□□□□ -0.58
USP3-215ENST00000559771 CUX2O14529 1486 aa11.44□□□□□ -0.58
USP3-215ENST00000559771 NESP48681 1621 aa11.44□□□□□ -0.58
USP3-215ENST00000559771 PEG3Q9GZU2 1588 aa11.44□□□□□ -0.58
USP3-215ENST00000559771 ERCC6Q03468 1493 aa11.41□□□□□ -0.58
USP3-215ENST00000559771 BAZ1BQ9UIG0 1483 aaKnown RBP11.4□□□□□ -0.58
USP3-215ENST00000559771 CCDC61Q9Y6R9 512 aa11.4□□□□□ -0.58
USP3-215ENST00000559771 MROH2BQ7Z745 1585 aa11.4□□□□□ -0.58
USP3-215ENST00000559771 KIF12Q96FN5 646 aa11.39□□□□□ -0.59
USP3-215ENST00000559771 THOC2Q8NI27 1593 aaKnown RBP11.34□□□□□ -0.59
USP3-215ENST00000559771 SLAIN1Q8ND83 568 aa11.33□□□□□ -0.6
USP3-215ENST00000559771 TIE1P35590 1138 aa11.31□□□□□ -0.6
USP3-215ENST00000559771 TSPYL2Q9H2G4 693 aaPredicted RBP11.31□□□□□ -0.6
USP3-215ENST00000559771 LAMC3Q9Y6N6 1575 aa11.31□□□□□ -0.6
USP3-215ENST00000559771 KIF21AQ7Z4S6 1674 aa11.29□□□□□ -0.6
USP3-215ENST00000559771 TTLL13PA6NNM8 815 aa11.28□□□□□ -0.6
USP3-215ENST00000559771 SEC24BO95487 1268 aa11.28□□□□□ -0.6
USP3-215ENST00000559771 WIZO95785 1651 aa11.27□□□□□ -0.61
USP3-215ENST00000559771 MAP3K13O43283 966 aa11.25□□□□□ -0.61
USP3-215ENST00000559771 MARVELD3Q96A59 401 aa11.24□□□□□ -0.61
USP3-215ENST00000559771 TMEM121BQ9BXQ6 578 aaPredicted RBP11.24□□□□□ -0.61
USP3-215ENST00000559771 PDS5BQ9NTI5 1447 aa11.21□□□□□ -0.61
USP3-215ENST00000559771 CADPSQ9ULU8 1353 aa11.21□□□□□ -0.61
USP3-215ENST00000559771 KRTAP3-3Q9BYR6 98 aa11.21□□□□□ -0.61
USP3-215ENST00000559771 KRTAP3-2Q9BYR7 98 aa11.21□□□□□ -0.61
USP3-215ENST00000559771 IER5LQ5T953 404 aa11.2□□□□□ -0.62
USP3-215ENST00000559771 POTEB3A0JP26 581 aa11.18□□□□□ -0.62
USP3-215ENST00000559771 POTEBQ6S5H4 581 aa11.18□□□□□ -0.62
USP3-215ENST00000559771 TRIM35Q9UPQ4 493 aa11.17□□□□□ -0.62
USP3-215ENST00000559771 WDR62O43379 1518 aa11.15□□□□□ -0.62
USP3-215ENST00000559771 MRC2Q9UBG0 1479 aa11.15□□□□□ -0.62
USP3-215ENST00000559771 RSF1Q96T23 1441 aaPredicted RBP11.14□□□□□ -0.63
USP3-215ENST00000559771 CFTRP13569 1480 aa11.1□□□□□ -0.63
USP3-215ENST00000559771 TOP2AP11388 1531 aaKnown RBP11.09□□□□□ -0.63
USP3-215ENST00000559771 FANCD2Q9BXW9 1451 aa11.08□□□□□ -0.64
USP3-215ENST00000559771 CEP164Q9UPV0 1460 aa11.08□□□□□ -0.64
USP3-215ENST00000559771 SPDYE4A6NLX3 237 aa11.08□□□□□ -0.64
USP3-215ENST00000559771 IRX5P78411 483 aaPredicted RBP11.04□□□□□ -0.64
USP3-215ENST00000559771 URB2Q14146 1524 aaKnown RBP11.04□□□□□ -0.64
USP3-215ENST00000559771 RASEFQ8IZ41 740 aa11.03□□□□□ -0.64
USP3-215ENST00000559771 SNPHO15079 494 aa11.01□□□□□ -0.65
USP3-215ENST00000559771 HS3ST6Q96QI5 342 aa11□□□□□ -0.65
USP3-215ENST00000559771 PRDM2Q13029 1718 aa11□□□□□ -0.65
USP3-215ENST00000559771 EMP3P54852 163 aa10.98□□□□□ -0.65
USP3-215ENST00000559771 CCDC88BA6NC98 1476 aa10.98□□□□□ -0.65
USP3-215ENST00000559771 PLCG2P16885 1265 aa10.97□□□□□ -0.65
USP3-215ENST00000559771 SGIP1Q9BQI5 828 aa10.94□□□□□ -0.66
USP3-215ENST00000559771 FAM205CA6NFA0 338 aa10.93□□□□□ -0.66
USP3-215ENST00000559771 TRIM41Q8WV44 630 aa10.92□□□□□ -0.66
USP3-215ENST00000559771 PCDHB13Q9Y5F0 798 aa10.92□□□□□ -0.66
USP3-215ENST00000559771 IFNL1Q8IU54 200 aa10.91□□□□□ -0.66
USP3-215ENST00000559771 ZNF608Q9ULD9 1512 aaPredicted RBP10.9□□□□□ -0.66
USP3-215ENST00000559771 TMEM106CQ9BVX2 250 aa10.9□□□□□ -0.66
USP3-215ENST00000559771 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.9□□□□□ -0.66
USP3-215ENST00000559771 TOPBP1Q92547 1522 aa10.89□□□□□ -0.67
USP3-215ENST00000559771 OCEL1Q9H607 264 aa10.88□□□□□ -0.67
USP3-215ENST00000559771 IFT140Q96RY7 1462 aa10.87□□□□□ -0.67
USP3-215ENST00000559771 DNMBPQ6XZF7 1577 aa10.84□□□□□ -0.67
USP3-215ENST00000559771 EIF4G3O43432 1585 aaKnown RBP10.83□□□□□ -0.68
USP3-215ENST00000559771 TARBP1Q13395 1621 aaKnown RBP10.83□□□□□ -0.68
USP3-215ENST00000559771 RNF166Q96A37 237 aaPredicted RBP10.82□□□□□ -0.68
USP3-215ENST00000559771 RIMBP3CA6NJZ7 1639 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms