RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 RASEFQ8IZ41 740 aa11.53□□□□□ -0.56
SRP54-212ENST00000556992 PLCD3Q8N3E9 789 aa11.5□□□□□ -0.57
SRP54-212ENST00000556992 TRPC6Q9Y210 931 aa11.5□□□□□ -0.57
SRP54-212ENST00000556992 ATMINO43313 823 aaPredicted RBP11.48□□□□□ -0.57
SRP54-212ENST00000556992 PLEKHG5O94827 1062 aa11.48□□□□□ -0.57
SRP54-212ENST00000556992 KIF12Q96FN5 646 aa11.48□□□□□ -0.57
SRP54-212ENST00000556992 OTUD5Q96G74 571 aa11.48□□□□□ -0.57
SRP54-212ENST00000556992 ASTLQ6HA08 431 aaPredicted RBP11.47□□□□□ -0.57
SRP54-212ENST00000556992 MAP3K13O43283 966 aa11.45□□□□□ -0.58
SRP54-212ENST00000556992 METRNQ9UJH8 293 aa11.45□□□□□ -0.58
SRP54-212ENST00000556992 ATN1P54259 1190 aaPredicted RBP11.44□□□□□ -0.58
SRP54-212ENST00000556992 BMP2KQ9NSY1 1161 aaPredicted RBP11.4□□□□□ -0.58
SRP54-212ENST00000556992 POTEJP0CG39 1038 aa11.39□□□□□ -0.59
SRP54-212ENST00000556992 SLC39A7Q92504 469 aa11.38□□□□□ -0.59
SRP54-212ENST00000556992 NUBP1P53384 320 aa11.37□□□□□ -0.59
SRP54-212ENST00000556992 C7P10643 843 aa11.34□□□□□ -0.59
SRP54-212ENST00000556992 POTEFA5A3E0 1075 aa11.32□□□□□ -0.6
SRP54-212ENST00000556992 PCDHB13Q9Y5F0 798 aa11.3□□□□□ -0.6
SRP54-212ENST00000556992 TTLL13PA6NNM8 815 aa11.29□□□□□ -0.6
SRP54-212ENST00000556992 ZBTB47Q9UFB7 747 aaPredicted RBP11.29□□□□□ -0.6
SRP54-212ENST00000556992 TIE1P35590 1138 aa11.28□□□□□ -0.6
SRP54-212ENST00000556992 IFNL1Q8IU54 200 aa11.26□□□□□ -0.61
SRP54-212ENST00000556992 FAM212AQ96EL1 285 aa11.25□□□□□ -0.61
SRP54-212ENST00000556992 COLQQ9Y215 455 aaPredicted RBP11.25□□□□□ -0.61
SRP54-212ENST00000556992 TRIM35Q9UPQ4 493 aa11.23□□□□□ -0.61
SRP54-212ENST00000556992 PYGBP11216 843 aa11.21□□□□□ -0.61
SRP54-212ENST00000556992 DCAF8Q5TAQ9 597 aa11.21□□□□□ -0.61
SRP54-212ENST00000556992 PLSCR2Q9NRY7 297 aa11.21□□□□□ -0.61
SRP54-212ENST00000556992 POTEMA6NI47 508 aa11.19□□□□□ -0.62
SRP54-212ENST00000556992 SEC24BO95487 1268 aa11.18□□□□□ -0.62
SRP54-212ENST00000556992 TMEM106CQ9BVX2 250 aa11.18□□□□□ -0.62
SRP54-212ENST00000556992 SGIP1Q9BQI5 828 aa11.17□□□□□ -0.62
SRP54-212ENST00000556992 SCUBE2Q9NQ36 999 aa11.17□□□□□ -0.62
SRP54-212ENST00000556992 FBXO3Q9UK99 471 aa11.17□□□□□ -0.62
SRP54-212ENST00000556992 POTEGQ6S5H5 508 aa11.16□□□□□ -0.62
SRP54-212ENST00000556992 MAMSTRQ6ZN01 415 aa11.16□□□□□ -0.62
SRP54-212ENST00000556992 VASPP50552 380 aaPredicted RBP11.14□□□□□ -0.63
SRP54-212ENST00000556992 KLHL34Q8N239 644 aa11.13□□□□□ -0.63
SRP54-212ENST00000556992 PCDHB8Q9UN66 801 aa11.13□□□□□ -0.63
SRP54-212ENST00000556992 LCE2DQ5TA82 110 aaPredicted RBP11.12□□□□□ -0.63
SRP54-212ENST00000556992 FAM163AQ96GL9 167 aaPredicted RBP11.12□□□□□ -0.63
SRP54-212ENST00000556992 IER5LQ5T953 404 aa11.07□□□□□ -0.64
SRP54-212ENST00000556992 PLCG2P16885 1265 aa11.03□□□□□ -0.64
SRP54-212ENST00000556992 IRX5P78411 483 aaPredicted RBP11.02□□□□□ -0.65
SRP54-212ENST00000556992 GSE1Q14687 1217 aa10.98□□□□□ -0.65
SRP54-212ENST00000556992 SLAIN1Q8ND83 568 aa10.98□□□□□ -0.65
SRP54-212ENST00000556992 IFNLR1Q8IU57 520 aaPredicted RBP10.97□□□□□ -0.65
SRP54-212ENST00000556992 OCEL1Q9H607 264 aa10.94□□□□□ -0.66
SRP54-212ENST00000556992 CIZ1Q9ULV3 898 aaPredicted RBP10.92□□□□□ -0.66
SRP54-212ENST00000556992 ZNF467Q7Z7K2 595 aaPredicted RBP10.91□□□□□ -0.66
SRP54-212ENST00000556992 PSEN1P49768 467 aa10.89□□□□□ -0.67
SRP54-212ENST00000556992 SPOCK2Q92563 424 aa10.89□□□□□ -0.67
SRP54-212ENST00000556992 PDCD7Q8N8D1 485 aaKnown RBP10.88□□□□□ -0.67
SRP54-212ENST00000556992 ST18O60284 1047 aa10.87□□□□□ -0.67
SRP54-212ENST00000556992 CHRM1P11229 460 aaPredicted RBP10.86□□□□□ -0.67
SRP54-212ENST00000556992 GOLGA2Q08379 1002 aa10.86□□□□□ -0.67
SRP54-212ENST00000556992 MKRN3Q13064 507 aaKnown RBP10.86□□□□□ -0.67
SRP54-212ENST00000556992 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.83□□□□□ -0.68
SRP54-212ENST00000556992 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.82□□□□□ -0.68
SRP54-212ENST00000556992 PCDH10Q9P2E7 1040 aa10.82□□□□□ -0.68
SRP54-212ENST00000556992 DPY19L2Q6NUT2 758 aa10.8□□□□□ -0.68
SRP54-212ENST00000556992 CDAN1Q8IWY9 1227 aa10.8□□□□□ -0.68
SRP54-212ENST00000556992 CABP2Q9NPB3 220 aa10.8□□□□□ -0.68
SRP54-212ENST00000556992 PDAP1Q13442 181 aaKnown RBP10.79□□□□□ -0.68
SRP54-212ENST00000556992 C3orf67Q6ZVT6 689 aa10.76□□□□□ -0.69
SRP54-212ENST00000556992 MARVELD3Q96A59 401 aa10.76□□□□□ -0.69
SRP54-212ENST00000556992 L3MBTL3Q96JM7 780 aaPredicted RBP10.72□□□□□ -0.69
SRP54-212ENST00000556992 ILDR1Q86SU0 546 aaPredicted RBP10.69□□□□□ -0.7
SRP54-212ENST00000556992 SNPHO15079 494 aa10.67□□□□□ -0.7
SRP54-212ENST00000556992 EFCAB3Q8N7B9 438 aa10.67□□□□□ -0.7
SRP54-212ENST00000556992 RNF25Q96BH1 459 aaPredicted RBP10.64□□□□□ -0.71
SRP54-212ENST00000556992 BOLA1Q9Y3E2 137 aa10.64□□□□□ -0.71
SRP54-212ENST00000556992 TMEM121BQ9BXQ6 578 aaPredicted RBP10.63□□□□□ -0.71
SRP54-212ENST00000556992 G3V3G9 751 aa10.6□□□□□ -0.71
SRP54-212ENST00000556992 EMP3P54852 163 aa10.6□□□□□ -0.71
SRP54-212ENST00000556992 POTEB3A0JP26 581 aa10.59□□□□□ -0.71
SRP54-212ENST00000556992 POTEBQ6S5H4 581 aa10.59□□□□□ -0.71
SRP54-212ENST00000556992 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.58□□□□□ -0.72
SRP54-212ENST00000556992 ZFP91Q96JP5 570 aaPredicted RBP10.58□□□□□ -0.72
SRP54-212ENST00000556992 FAM205CA6NFA0 338 aa10.57□□□□□ -0.72
SRP54-212ENST00000556992 TRIM41Q8WV44 630 aa10.57□□□□□ -0.72
SRP54-212ENST00000556992 RIOK3O14730 519 aaKnown RBP10.56□□□□□ -0.72
SRP54-212ENST00000556992 HOXB3P14651 431 aaPredicted RBP10.55□□□□□ -0.72
SRP54-212ENST00000556992 HS3ST6Q96QI5 342 aa10.54□□□□□ -0.72
SRP54-212ENST00000556992 SPNS2Q8IVW8 549 aa10.53□□□□□ -0.72
SRP54-212ENST00000556992 MS4A4AQ96JQ5 239 aa10.52□□□□□ -0.73
SRP54-212ENST00000556992 PHF8Q9UPP1 1060 aa10.52□□□□□ -0.73
SRP54-212ENST00000556992 MMRN1Q13201 1228 aa10.51□□□□□ -0.73
SRP54-212ENST00000556992 TMEM92Q6UXU6 159 aa10.51□□□□□ -0.73
SRP54-212ENST00000556992 MICALL2Q8IY33 904 aa10.5□□□□□ -0.73
SRP54-212ENST00000556992 VGFO15240 615 aaPredicted RBP10.49□□□□□ -0.73
SRP54-212ENST00000556992 KRTAP3-3Q9BYR6 98 aa10.49□□□□□ -0.73
SRP54-212ENST00000556992 KRTAP3-2Q9BYR7 98 aa10.49□□□□□ -0.73
SRP54-212ENST00000556992 ZNF710Q8N1W2 664 aa10.47□□□□□ -0.73
SRP54-212ENST00000556992 SOX12O15370 315 aa10.44□□□□□ -0.74
SRP54-212ENST00000556992 BCL11BQ9C0K0 894 aaPredicted RBP10.44□□□□□ -0.74
SRP54-212ENST00000556992 HOXB1P14653 301 aaPredicted RBP10.42□□□□□ -0.74
SRP54-212ENST00000556992 STK24Q9Y6E0 443 aa10.42□□□□□ -0.74
SRP54-212ENST00000556992 DOK7Q18PE1 504 aa10.41□□□□□ -0.74
SRP54-212ENST00000556992 ERBB3P21860 1342 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms