RNA–Protein interactions for RNA: ENST00000556268.1

GTF2A1-204, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 5

Gene GTF2A1, Length 864 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-204ENST00000556268 ZBTB47Q9UFB7 747 aaPredicted RBP18.39■□□□□ 0.53
GTF2A1-204ENST00000556268 CECR2Q9BXF3 1484 aa18.38■□□□□ 0.53
GTF2A1-204ENST00000556268 CC2D2AQ9P2K1 1620 aa18.36■□□□□ 0.53
GTF2A1-204ENST00000556268 SP7Q8TDD2 431 aaPredicted RBP18.34■□□□□ 0.53
GTF2A1-204ENST00000556268 SCRIBQ14160 1630 aa18.33■□□□□ 0.52
GTF2A1-204ENST00000556268 EIF4G1Q04637 1599 aaKnown RBP18.3■□□□□ 0.52
GTF2A1-204ENST00000556268 ZRANB1Q9UGI0 708 aa18.28■□□□□ 0.52
GTF2A1-204ENST00000556268 IFNLR1Q8IU57 520 aaPredicted RBP18.27■□□□□ 0.52
GTF2A1-204ENST00000556268 KLHL34Q8N239 644 aa18.27■□□□□ 0.52
GTF2A1-204ENST00000556268 PAK3O75914 559 aaPredicted RBP18.25■□□□□ 0.51
GTF2A1-204ENST00000556268 RASEFQ8IZ41 740 aa18.24■□□□□ 0.51
GTF2A1-204ENST00000556268 NUBP1P53384 320 aa18.23■□□□□ 0.51
GTF2A1-204ENST00000556268 TSPYL2Q9H2G4 693 aaPredicted RBP18.2■□□□□ 0.5
GTF2A1-204ENST00000556268 ZNF579Q8NAF0 562 aaKnown RBP18.18■□□□□ 0.5
GTF2A1-204ENST00000556268 PHF12Q96QT6 1004 aa18.11■□□□□ 0.49
GTF2A1-204ENST00000556268 FAM212AQ96EL1 285 aa18.09■□□□□ 0.49
GTF2A1-204ENST00000556268 CCDC61Q9Y6R9 512 aa18.09■□□□□ 0.49
GTF2A1-204ENST00000556268 SPOCK2Q92563 424 aa18.08■□□□□ 0.48
GTF2A1-204ENST00000556268 GABBR2O75899 941 aa18.07■□□□□ 0.48
GTF2A1-204ENST00000556268 DCAF8Q5TAQ9 597 aa17.99■□□□□ 0.47
GTF2A1-204ENST00000556268 CLCN6P51797 869 aa17.97■□□□□ 0.47
GTF2A1-204ENST00000556268 GALR2O43603 387 aaPredicted RBP17.93■□□□□ 0.46
GTF2A1-204ENST00000556268 DNAJC5Q9H3Z4 198 aa17.93■□□□□ 0.46
GTF2A1-204ENST00000556268 GSE1Q14687 1217 aa17.91■□□□□ 0.46
GTF2A1-204ENST00000556268 KIF12Q96FN5 646 aa17.91■□□□□ 0.46
GTF2A1-204ENST00000556268 MS4A3Q96HJ5 214 aa17.88■□□□□ 0.45
GTF2A1-204ENST00000556268 MAP3K13O43283 966 aa17.86■□□□□ 0.45
GTF2A1-204ENST00000556268 CIZ1Q9ULV3 898 aaPredicted RBP17.86■□□□□ 0.45
GTF2A1-204ENST00000556268 PYGBP11216 843 aa17.84■□□□□ 0.45
GTF2A1-204ENST00000556268 NCAPD3P42695 1498 aa17.79■□□□□ 0.44
GTF2A1-204ENST00000556268 PCDHB13Q9Y5F0 798 aa17.77■□□□□ 0.44
GTF2A1-204ENST00000556268 SGIP1Q9BQI5 828 aa17.74■□□□□ 0.43
GTF2A1-204ENST00000556268 DCBLD2Q96PD2 775 aa17.73■□□□□ 0.43
GTF2A1-204ENST00000556268 POTEIP0CG38 1075 aa17.72■□□□□ 0.43
GTF2A1-204ENST00000556268 IFNL1Q8IU54 200 aa17.7■□□□□ 0.42
GTF2A1-204ENST00000556268 CHRM1P11229 460 aaPredicted RBP17.69■□□□□ 0.42
GTF2A1-204ENST00000556268 TRPC6Q9Y210 931 aa17.69■□□□□ 0.42
GTF2A1-204ENST00000556268 ATAD2BQ9ULI0 1458 aa17.67■□□□□ 0.42
GTF2A1-204ENST00000556268 TRIM41Q8WV44 630 aa17.63■□□□□ 0.41
GTF2A1-204ENST00000556268 CUX2O14529 1486 aa17.63■□□□□ 0.41
GTF2A1-204ENST00000556268 PCDHB8Q9UN66 801 aa17.62■□□□□ 0.41
GTF2A1-204ENST00000556268 ASTLQ6HA08 431 aaPredicted RBP17.58■□□□□ 0.4
GTF2A1-204ENST00000556268 ZNF467Q7Z7K2 595 aaPredicted RBP17.58■□□□□ 0.4
GTF2A1-204ENST00000556268 BMP2KQ9NSY1 1161 aaPredicted RBP17.58■□□□□ 0.4
GTF2A1-204ENST00000556268 ATMINO43313 823 aaPredicted RBP17.57■□□□□ 0.4
GTF2A1-204ENST00000556268 TIE1P35590 1138 aa17.57■□□□□ 0.4
GTF2A1-204ENST00000556268 ERCC6Q03468 1493 aa17.55■□□□□ 0.4
GTF2A1-204ENST00000556268 SMARCA2P51531 1590 aa17.54■□□□□ 0.4
GTF2A1-204ENST00000556268 PKD2Q13563 968 aa17.54■□□□□ 0.4
GTF2A1-204ENST00000556268 HMGXB3Q12766 1538 aa17.52■□□□□ 0.4
GTF2A1-204ENST00000556268 SMARCA4P51532 1647 aa17.51■□□□□ 0.39
GTF2A1-204ENST00000556268 TTLL13PA6NNM8 815 aa17.51■□□□□ 0.39
GTF2A1-204ENST00000556268 ATN1P54259 1190 aaPredicted RBP17.51■□□□□ 0.39
GTF2A1-204ENST00000556268 PELP1Q8IZL8 1130 aaKnown RBP17.51■□□□□ 0.39
GTF2A1-204ENST00000556268 TMEM106CQ9BVX2 250 aa17.48■□□□□ 0.39
GTF2A1-204ENST00000556268 ECM2O94769 699 aaPredicted RBP17.47■□□□□ 0.39
GTF2A1-204ENST00000556268 RNF25Q96BH1 459 aaPredicted RBP17.47■□□□□ 0.39
GTF2A1-204ENST00000556268 NESP48681 1621 aa17.46■□□□□ 0.39
GTF2A1-204ENST00000556268 BAZ1AQ9NRL2 1556 aaPredicted RBP17.44■□□□□ 0.38
GTF2A1-204ENST00000556268 BAZ1BQ9UIG0 1483 aaKnown RBP17.42■□□□□ 0.38
GTF2A1-204ENST00000556268 PEG3Q9GZU2 1588 aa17.41■□□□□ 0.38
GTF2A1-204ENST00000556268 PSEN1P49768 467 aa17.41■□□□□ 0.38
GTF2A1-204ENST00000556268 PDAP1Q13442 181 aaKnown RBP17.41■□□□□ 0.38
GTF2A1-204ENST00000556268 RIOK3O14730 519 aaKnown RBP17.4■□□□□ 0.38
GTF2A1-204ENST00000556268 TRIM35Q9UPQ4 493 aa17.4■□□□□ 0.38
GTF2A1-204ENST00000556268 SLC39A7Q92504 469 aa17.36■□□□□ 0.37
GTF2A1-204ENST00000556268 METRNQ9UJH8 293 aa17.35■□□□□ 0.37
GTF2A1-204ENST00000556268 RGL2O15211 777 aa17.34■□□□□ 0.37
GTF2A1-204ENST00000556268 MROH2BQ7Z745 1585 aa17.32■□□□□ 0.36
GTF2A1-204ENST00000556268 C7P10643 843 aa17.31■□□□□ 0.36
GTF2A1-204ENST00000556268 LAMC3Q9Y6N6 1575 aa17.29■□□□□ 0.36
GTF2A1-204ENST00000556268 VGFO15240 615 aaPredicted RBP17.29■□□□□ 0.36
GTF2A1-204ENST00000556268 PDS5BQ9NTI5 1447 aa17.27■□□□□ 0.35
GTF2A1-204ENST00000556268 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.25■□□□□ 0.35
GTF2A1-204ENST00000556268 IER5LQ5T953 404 aa17.25■□□□□ 0.35
GTF2A1-204ENST00000556268 ZFP91Q96JP5 570 aaPredicted RBP17.25■□□□□ 0.35
GTF2A1-204ENST00000556268 THOC2Q8NI27 1593 aaKnown RBP17.24■□□□□ 0.35
GTF2A1-204ENST00000556268 CADPSQ9ULU8 1353 aa17.23■□□□□ 0.35
GTF2A1-204ENST00000556268 GOLGA2Q08379 1002 aa17.21■□□□□ 0.35
GTF2A1-204ENST00000556268 CABP2Q9NPB3 220 aa17.21■□□□□ 0.35
GTF2A1-204ENST00000556268 POTEFA5A3E0 1075 aa17.2■□□□□ 0.34
GTF2A1-204ENST00000556268 LHX8Q68G74 356 aa17.2■□□□□ 0.34
GTF2A1-204ENST00000556268 TAOK2Q9UL54 1235 aa17.19■□□□□ 0.34
GTF2A1-204ENST00000556268 COLQQ9Y215 455 aaPredicted RBP17.18■□□□□ 0.34
GTF2A1-204ENST00000556268 SEC24BO95487 1268 aa17.17■□□□□ 0.34
GTF2A1-204ENST00000556268 POTEB2H3BUK9 544 aa17.16■□□□□ 0.34
GTF2A1-204ENST00000556268 MKRN3Q13064 507 aaKnown RBP17.15■□□□□ 0.34
GTF2A1-204ENST00000556268 IRX5P78411 483 aaPredicted RBP17.14■□□□□ 0.33
GTF2A1-204ENST00000556268 AMER1Q5JTC6 1135 aaPredicted RBP17.12■□□□□ 0.33
GTF2A1-204ENST00000556268 BCL11BQ9C0K0 894 aaPredicted RBP17.12■□□□□ 0.33
GTF2A1-204ENST00000556268 KIF21AQ7Z4S6 1674 aa17.12■□□□□ 0.33
GTF2A1-204ENST00000556268 STK25O00506 426 aa17.1■□□□□ 0.33
GTF2A1-204ENST00000556268 PLCG2P16885 1265 aa17.1■□□□□ 0.33
GTF2A1-204ENST00000556268 RTN4Q9NQC3 1192 aaKnown RBP17.1■□□□□ 0.33
GTF2A1-204ENST00000556268 STK24Q9Y6E0 443 aa17.08■□□□□ 0.32
GTF2A1-204ENST00000556268 MRC2Q9UBG0 1479 aa17.07■□□□□ 0.32
GTF2A1-204ENST00000556268 EFCAB3Q8N7B9 438 aa17.07■□□□□ 0.32
GTF2A1-204ENST00000556268 OCEL1Q9H607 264 aa17.06■□□□□ 0.32
GTF2A1-204ENST00000556268 WIZO95785 1651 aa17.05■□□□□ 0.32
GTF2A1-204ENST00000556268 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms