RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 PHF12Q96QT6 1004 aa13.35□□□□□ -0.27
SCAF11-213ENST00000550629 PLEKHG5O94827 1062 aa13.31□□□□□ -0.28
SCAF11-213ENST00000550629 LCE2DQ5TA82 110 aaPredicted RBP13.26□□□□□ -0.29
SCAF11-213ENST00000550629 PELP1Q8IZL8 1130 aaKnown RBP13.26□□□□□ -0.29
SCAF11-213ENST00000550629 MIER1Q8N108 512 aa13.24□□□□□ -0.29
SCAF11-213ENST00000550629 TSPYL2Q9H2G4 693 aaPredicted RBP13.23□□□□□ -0.29
SCAF11-213ENST00000550629 POTEJP0CG39 1038 aa13.22□□□□□ -0.29
SCAF11-213ENST00000550629 PLCD3Q8N3E9 789 aa13.18□□□□□ -0.3
SCAF11-213ENST00000550629 FAM163AQ96GL9 167 aaPredicted RBP13.17□□□□□ -0.3
SCAF11-213ENST00000550629 MS4A3Q96HJ5 214 aa13.17□□□□□ -0.3
SCAF11-213ENST00000550629 FBXO3Q9UK99 471 aa13.15□□□□□ -0.3
SCAF11-213ENST00000550629 CCDC61Q9Y6R9 512 aa13.11□□□□□ -0.31
SCAF11-213ENST00000550629 METRNQ9UJH8 293 aa13.1□□□□□ -0.31
SCAF11-213ENST00000550629 ZBTB47Q9UFB7 747 aaPredicted RBP13.09□□□□□ -0.31
SCAF11-213ENST00000550629 RASEFQ8IZ41 740 aa13.07□□□□□ -0.32
SCAF11-213ENST00000550629 ASTLQ6HA08 431 aaPredicted RBP13.05□□□□□ -0.32
SCAF11-213ENST00000550629 KIF12Q96FN5 646 aa13.04□□□□□ -0.32
SCAF11-213ENST00000550629 ATMINO43313 823 aaPredicted RBP13.02□□□□□ -0.33
SCAF11-213ENST00000550629 MAMSTRQ6ZN01 415 aa13.02□□□□□ -0.33
SCAF11-213ENST00000550629 SLC39A7Q92504 469 aa13□□□□□ -0.33
SCAF11-213ENST00000550629 C7P10643 843 aa12.99□□□□□ -0.33
SCAF11-213ENST00000550629 VASPP50552 380 aaPredicted RBP12.99□□□□□ -0.33
SCAF11-213ENST00000550629 MAP3K13O43283 966 aa12.97□□□□□ -0.33
SCAF11-213ENST00000550629 CDAN1Q8IWY9 1227 aa12.95□□□□□ -0.34
SCAF11-213ENST00000550629 ATN1P54259 1190 aaPredicted RBP12.93□□□□□ -0.34
SCAF11-213ENST00000550629 FAM212AQ96EL1 285 aa12.93□□□□□ -0.34
SCAF11-213ENST00000550629 NUBP1P53384 320 aa12.92□□□□□ -0.34
SCAF11-213ENST00000550629 SCUBE2Q9NQ36 999 aa12.92□□□□□ -0.34
SCAF11-213ENST00000550629 BMP2KQ9NSY1 1161 aaPredicted RBP12.92□□□□□ -0.34
SCAF11-213ENST00000550629 TIE1P35590 1138 aa12.9□□□□□ -0.34
SCAF11-213ENST00000550629 TRPC6Q9Y210 931 aa12.9□□□□□ -0.34
SCAF11-213ENST00000550629 PCDHB13Q9Y5F0 798 aa12.89□□□□□ -0.35
SCAF11-213ENST00000550629 SGIP1Q9BQI5 828 aa12.85□□□□□ -0.35
SCAF11-213ENST00000550629 KLHL34Q8N239 644 aa12.83□□□□□ -0.36
SCAF11-213ENST00000550629 TTLL13PA6NNM8 815 aa12.82□□□□□ -0.36
SCAF11-213ENST00000550629 IFNLR1Q8IU57 520 aaPredicted RBP12.82□□□□□ -0.36
SCAF11-213ENST00000550629 POTEFA5A3E0 1075 aa12.8□□□□□ -0.36
SCAF11-213ENST00000550629 DCAF8Q5TAQ9 597 aa12.78□□□□□ -0.36
SCAF11-213ENST00000550629 SEC24BO95487 1268 aa12.77□□□□□ -0.37
SCAF11-213ENST00000550629 IFNL1Q8IU54 200 aa12.77□□□□□ -0.37
SCAF11-213ENST00000550629 TRIM35Q9UPQ4 493 aa12.76□□□□□ -0.37
SCAF11-213ENST00000550629 MMRN1Q13201 1228 aa12.73□□□□□ -0.37
SCAF11-213ENST00000550629 TMEM106CQ9BVX2 250 aa12.73□□□□□ -0.37
SCAF11-213ENST00000550629 IER5LQ5T953 404 aa12.72□□□□□ -0.37
SCAF11-213ENST00000550629 PYGBP11216 843 aa12.71□□□□□ -0.37
SCAF11-213ENST00000550629 COLQQ9Y215 455 aaPredicted RBP12.69□□□□□ -0.38
SCAF11-213ENST00000550629 SPOCK2Q92563 424 aa12.68□□□□□ -0.38
SCAF11-213ENST00000550629 SPNS2Q8IVW8 549 aa12.66□□□□□ -0.38
SCAF11-213ENST00000550629 ST18O60284 1047 aa12.64□□□□□ -0.39
SCAF11-213ENST00000550629 GSE1Q14687 1217 aa12.64□□□□□ -0.39
SCAF11-213ENST00000550629 PLCG2P16885 1265 aa12.62□□□□□ -0.39
SCAF11-213ENST00000550629 PCDHB8Q9UN66 801 aa12.61□□□□□ -0.39
SCAF11-213ENST00000550629 ZNF467Q7Z7K2 595 aaPredicted RBP12.55□□□□□ -0.4
SCAF11-213ENST00000550629 CIZ1Q9ULV3 898 aaPredicted RBP12.54□□□□□ -0.4
SCAF11-213ENST00000550629 IRX5P78411 483 aaPredicted RBP12.52□□□□□ -0.41
SCAF11-213ENST00000550629 SLAIN1Q8ND83 568 aa12.51□□□□□ -0.41
SCAF11-213ENST00000550629 GOLGA2Q08379 1002 aa12.5□□□□□ -0.41
SCAF11-213ENST00000550629 OCEL1Q9H607 264 aa12.49□□□□□ -0.41
SCAF11-213ENST00000550629 CHRM1P11229 460 aaPredicted RBP12.47□□□□□ -0.41
SCAF11-213ENST00000550629 MKRN3Q13064 507 aaKnown RBP12.43□□□□□ -0.42
SCAF11-213ENST00000550629 PSEN1P49768 467 aa12.42□□□□□ -0.42
SCAF11-213ENST00000550629 PDAP1Q13442 181 aaKnown RBP12.38□□□□□ -0.43
SCAF11-213ENST00000550629 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.38□□□□□ -0.43
SCAF11-213ENST00000550629 MARVELD3Q96A59 401 aa12.37□□□□□ -0.43
SCAF11-213ENST00000550629 TRIM41Q8WV44 630 aa12.36□□□□□ -0.43
SCAF11-213ENST00000550629 PDCD7Q8N8D1 485 aaKnown RBP12.35□□□□□ -0.43
SCAF11-213ENST00000550629 C3orf67Q6ZVT6 689 aa12.34□□□□□ -0.43
SCAF11-213ENST00000550629 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.34□□□□□ -0.43
SCAF11-213ENST00000550629 TMEM121BQ9BXQ6 578 aaPredicted RBP12.33□□□□□ -0.44
SCAF11-213ENST00000550629 PKD2Q13563 968 aa12.31□□□□□ -0.44
SCAF11-213ENST00000550629 L3MBTL3Q96JM7 780 aaPredicted RBP12.3□□□□□ -0.44
SCAF11-213ENST00000550629 CABP2Q9NPB3 220 aa12.29□□□□□ -0.44
SCAF11-213ENST00000550629 SNPHO15079 494 aa12.28□□□□□ -0.44
SCAF11-213ENST00000550629 ECM2O94769 699 aaPredicted RBP12.25□□□□□ -0.45
SCAF11-213ENST00000550629 RNF25Q96BH1 459 aaPredicted RBP12.25□□□□□ -0.45
SCAF11-213ENST00000550629 G3V3G9 751 aa12.22□□□□□ -0.45
SCAF11-213ENST00000550629 KRTAP3-3Q9BYR6 98 aa12.21□□□□□ -0.45
SCAF11-213ENST00000550629 KRTAP3-2Q9BYR7 98 aa12.21□□□□□ -0.45
SCAF11-213ENST00000550629 RIOK3O14730 519 aaKnown RBP12.2□□□□□ -0.46
SCAF11-213ENST00000550629 ILDR1Q86SU0 546 aaPredicted RBP12.18□□□□□ -0.46
SCAF11-213ENST00000550629 POTEB3A0JP26 581 aa12.17□□□□□ -0.46
SCAF11-213ENST00000550629 POTEBQ6S5H4 581 aa12.17□□□□□ -0.46
SCAF11-213ENST00000550629 RGL2O15211 777 aa12.16□□□□□ -0.46
SCAF11-213ENST00000550629 DPY19L2Q6NUT2 758 aa12.16□□□□□ -0.46
SCAF11-213ENST00000550629 BOLA1Q9Y3E2 137 aa12.15□□□□□ -0.46
SCAF11-213ENST00000550629 VGFO15240 615 aaPredicted RBP12.12□□□□□ -0.47
SCAF11-213ENST00000550629 EMP3P54852 163 aa12.12□□□□□ -0.47
SCAF11-213ENST00000550629 EFCAB3Q8N7B9 438 aa12.12□□□□□ -0.47
SCAF11-213ENST00000550629 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.1□□□□□ -0.47
SCAF11-213ENST00000550629 ZFP91Q96JP5 570 aaPredicted RBP12.1□□□□□ -0.47
SCAF11-213ENST00000550629 HS3ST6Q96QI5 342 aa12.09□□□□□ -0.47
SCAF11-213ENST00000550629 FAM205CA6NFA0 338 aa12.06□□□□□ -0.48
SCAF11-213ENST00000550629 TAOK2Q9UL54 1235 aa12.06□□□□□ -0.48
SCAF11-213ENST00000550629 BCL11BQ9C0K0 894 aaPredicted RBP12.01□□□□□ -0.49
SCAF11-213ENST00000550629 SOX12O15370 315 aa12□□□□□ -0.49
SCAF11-213ENST00000550629 STK25O00506 426 aa11.99□□□□□ -0.49
SCAF11-213ENST00000550629 AMER1Q5JTC6 1135 aaPredicted RBP11.98□□□□□ -0.49
SCAF11-213ENST00000550629 ZNF710Q8N1W2 664 aa11.98□□□□□ -0.49
SCAF11-213ENST00000550629 STK24Q9Y6E0 443 aa11.98□□□□□ -0.49
SCAF11-213ENST00000550629 MICALL2Q8IY33 904 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms