RNA–Protein interactions for RNA: ENST00000549580.1

SNRPF-202, Transcript of small nuclear ribonucleoprotein polypeptide F, humanhuman

TSL 2

Gene SNRPF, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPF-202ENST00000549580 MS4A3Q96HJ5 214 aa14.11□□□□□ -0.15
SNRPF-202ENST00000549580 ATMINO43313 823 aaPredicted RBP14.1□□□□□ -0.15
SNRPF-202ENST00000549580 PCDH10Q9P2E7 1040 aa14.09□□□□□ -0.15
SNRPF-202ENST00000549580 SLC39A7Q92504 469 aa14.08□□□□□ -0.16
SNRPF-202ENST00000549580 C7P10643 843 aa14.06□□□□□ -0.16
SNRPF-202ENST00000549580 LCE2DQ5TA82 110 aaPredicted RBP14.06□□□□□ -0.16
SNRPF-202ENST00000549580 MAMSTRQ6ZN01 415 aa13.98□□□□□ -0.17
SNRPF-202ENST00000549580 ATN1P54259 1190 aaPredicted RBP13.93□□□□□ -0.18
SNRPF-202ENST00000549580 CCDC61Q9Y6R9 512 aa13.91□□□□□ -0.18
SNRPF-202ENST00000549580 EHMT2Q96KQ7 1210 aa13.9□□□□□ -0.18
SNRPF-202ENST00000549580 POTEFA5A3E0 1075 aa13.89□□□□□ -0.19
SNRPF-202ENST00000549580 SCUBE2Q9NQ36 999 aa13.88□□□□□ -0.19
SNRPF-202ENST00000549580 FAM163AQ96GL9 167 aaPredicted RBP13.86□□□□□ -0.19
SNRPF-202ENST00000549580 TSPYL2Q9H2G4 693 aaPredicted RBP13.86□□□□□ -0.19
SNRPF-202ENST00000549580 KIF12Q96FN5 646 aa13.84□□□□□ -0.19
SNRPF-202ENST00000549580 BMP2KQ9NSY1 1161 aaPredicted RBP13.83□□□□□ -0.2
SNRPF-202ENST00000549580 TRPC6Q9Y210 931 aa13.81□□□□□ -0.2
SNRPF-202ENST00000549580 PROM2Q8N271 834 aa13.78□□□□□ -0.2
SNRPF-202ENST00000549580 TIE1P35590 1138 aa13.74□□□□□ -0.21
SNRPF-202ENST00000549580 MAP3K13O43283 966 aa13.71□□□□□ -0.21
SNRPF-202ENST00000549580 COLQQ9Y215 455 aaPredicted RBP13.7□□□□□ -0.22
SNRPF-202ENST00000549580 TTLL13PA6NNM8 815 aa13.66□□□□□ -0.22
SNRPF-202ENST00000549580 CDAN1Q8IWY9 1227 aa13.64□□□□□ -0.23
SNRPF-202ENST00000549580 RASEFQ8IZ41 740 aa13.64□□□□□ -0.23
SNRPF-202ENST00000549580 SEC24BO95487 1268 aa13.6□□□□□ -0.23
SNRPF-202ENST00000549580 IER5LQ5T953 404 aa13.58□□□□□ -0.24
SNRPF-202ENST00000549580 TRIM35Q9UPQ4 493 aa13.55□□□□□ -0.24
SNRPF-202ENST00000549580 SGIP1Q9BQI5 828 aa13.53□□□□□ -0.24
SNRPF-202ENST00000549580 ST18O60284 1047 aa13.52□□□□□ -0.25
SNRPF-202ENST00000549580 PLEKHG5O94827 1062 aa13.48□□□□□ -0.25
SNRPF-202ENST00000549580 MIER1Q8N108 512 aa13.48□□□□□ -0.25
SNRPF-202ENST00000549580 SLAIN1Q8ND83 568 aa13.48□□□□□ -0.25
SNRPF-202ENST00000549580 PCDHB13Q9Y5F0 798 aa13.47□□□□□ -0.25
SNRPF-202ENST00000549580 IFNL1Q8IU54 200 aa13.41□□□□□ -0.26
SNRPF-202ENST00000549580 NUBP1P53384 320 aa13.39□□□□□ -0.27
SNRPF-202ENST00000549580 IRX5P78411 483 aaPredicted RBP13.37□□□□□ -0.27
SNRPF-202ENST00000549580 MMRN1Q13201 1228 aa13.37□□□□□ -0.27
SNRPF-202ENST00000549580 TMEM106CQ9BVX2 250 aa13.36□□□□□ -0.27
SNRPF-202ENST00000549580 PLCG2P16885 1265 aa13.35□□□□□ -0.27
SNRPF-202ENST00000549580 SPNS2Q8IVW8 549 aa13.35□□□□□ -0.27
SNRPF-202ENST00000549580 TMEM121BQ9BXQ6 578 aaPredicted RBP13.32□□□□□ -0.28
SNRPF-202ENST00000549580 PLCD3Q8N3E9 789 aa13.3□□□□□ -0.28
SNRPF-202ENST00000549580 ZBTB47Q9UFB7 747 aaPredicted RBP13.25□□□□□ -0.29
SNRPF-202ENST00000549580 OCEL1Q9H607 264 aa13.24□□□□□ -0.29
SNRPF-202ENST00000549580 FAM212AQ96EL1 285 aa13.23□□□□□ -0.29
SNRPF-202ENST00000549580 SNPHO15079 494 aa13.2□□□□□ -0.3
SNRPF-202ENST00000549580 MARVELD3Q96A59 401 aa13.2□□□□□ -0.3
SNRPF-202ENST00000549580 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.18□□□□□ -0.3
SNRPF-202ENST00000549580 PYGBP11216 843 aa13.09□□□□□ -0.31
SNRPF-202ENST00000549580 PDCD7Q8N8D1 485 aaKnown RBP13.09□□□□□ -0.31
SNRPF-202ENST00000549580 KRTAP3-3Q9BYR6 98 aa13.07□□□□□ -0.32
SNRPF-202ENST00000549580 KRTAP3-2Q9BYR7 98 aa13.07□□□□□ -0.32
SNRPF-202ENST00000549580 PCDHB8Q9UN66 801 aa13.07□□□□□ -0.32
SNRPF-202ENST00000549580 POTEB3A0JP26 581 aa13.06□□□□□ -0.32
SNRPF-202ENST00000549580 POTEBQ6S5H4 581 aa13.06□□□□□ -0.32
SNRPF-202ENST00000549580 EMP3P54852 163 aa13.05□□□□□ -0.32
SNRPF-202ENST00000549580 HS3ST6Q96QI5 342 aa13.02□□□□□ -0.33
SNRPF-202ENST00000549580 DCAF8Q5TAQ9 597 aa13.01□□□□□ -0.33
SNRPF-202ENST00000549580 C3orf67Q6ZVT6 689 aa12.99□□□□□ -0.33
SNRPF-202ENST00000549580 FAM205CA6NFA0 338 aa12.95□□□□□ -0.34
SNRPF-202ENST00000549580 L3MBTL3Q96JM7 780 aaPredicted RBP12.95□□□□□ -0.34
SNRPF-202ENST00000549580 MKRN3Q13064 507 aaKnown RBP12.9□□□□□ -0.34
SNRPF-202ENST00000549580 ILDR1Q86SU0 546 aaPredicted RBP12.89□□□□□ -0.35
SNRPF-202ENST00000549580 ZNF467Q7Z7K2 595 aaPredicted RBP12.88□□□□□ -0.35
SNRPF-202ENST00000549580 GOLGA2Q08379 1002 aa12.86□□□□□ -0.35
SNRPF-202ENST00000549580 FKBP8Q14318 412 aa12.86□□□□□ -0.35
SNRPF-202ENST00000549580 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.86□□□□□ -0.35
SNRPF-202ENST00000549580 HOXB3P14651 431 aaPredicted RBP12.83□□□□□ -0.36
SNRPF-202ENST00000549580 CHRM1P11229 460 aaPredicted RBP12.8□□□□□ -0.36
SNRPF-202ENST00000549580 PSEN1P49768 467 aa12.8□□□□□ -0.36
SNRPF-202ENST00000549580 GSE1Q14687 1217 aa12.79□□□□□ -0.36
SNRPF-202ENST00000549580 DPY19L2Q6NUT2 758 aa12.79□□□□□ -0.36
SNRPF-202ENST00000549580 HOXB1P14653 301 aaPredicted RBP12.75□□□□□ -0.37
SNRPF-202ENST00000549580 BOLA1Q9Y3E2 137 aa12.72□□□□□ -0.37
SNRPF-202ENST00000549580 RNF166Q96A37 237 aaPredicted RBP12.7□□□□□ -0.38
SNRPF-202ENST00000549580 FBXO3Q9UK99 471 aa12.69□□□□□ -0.38
SNRPF-202ENST00000549580 PDAP1Q13442 181 aaKnown RBP12.67□□□□□ -0.38
SNRPF-202ENST00000549580 ERBB3P21860 1342 aa12.66□□□□□ -0.38
SNRPF-202ENST00000549580 DOK7Q18PE1 504 aa12.65□□□□□ -0.38
SNRPF-202ENST00000549580 ZNF710Q8N1W2 664 aa12.65□□□□□ -0.38
SNRPF-202ENST00000549580 CABP2Q9NPB3 220 aa12.64□□□□□ -0.39
SNRPF-202ENST00000549580 KLHL34Q8N239 644 aa12.63□□□□□ -0.39
SNRPF-202ENST00000549580 G3V3G9 751 aa12.62□□□□□ -0.39
SNRPF-202ENST00000549580 VASPP50552 380 aaPredicted RBP12.62□□□□□ -0.39
SNRPF-202ENST00000549580 VARS2Q5ST30 1063 aaKnown RBP12.59□□□□□ -0.39
SNRPF-202ENST00000549580 MYT1LQ9UL68 1186 aa12.59□□□□□ -0.39
SNRPF-202ENST00000549580 RIMBP2O15034 1052 aa12.53□□□□□ -0.4
SNRPF-202ENST00000549580 ZNF687Q8N1G0 1237 aa12.53□□□□□ -0.4
SNRPF-202ENST00000549580 TMEM92Q6UXU6 159 aa12.51□□□□□ -0.41
SNRPF-202ENST00000549580 ZSWIM6Q9HCJ5 1215 aa12.51□□□□□ -0.41
SNRPF-202ENST00000549580 GPR153Q6NV75 609 aa12.48□□□□□ -0.41
SNRPF-202ENST00000549580 PTGER2P43116 358 aa12.47□□□□□ -0.41
SNRPF-202ENST00000549580 MICALL2Q8IY33 904 aa12.44□□□□□ -0.42
SNRPF-202ENST00000549580 EFCAB3Q8N7B9 438 aa12.44□□□□□ -0.42
SNRPF-202ENST00000549580 CIZ1Q9ULV3 898 aaPredicted RBP12.4□□□□□ -0.42
SNRPF-202ENST00000549580 SPOCK2Q92563 424 aa12.39□□□□□ -0.43
SNRPF-202ENST00000549580 IFNLR1Q8IU57 520 aaPredicted RBP12.36□□□□□ -0.43
SNRPF-202ENST00000549580 ANKRD13DQ6ZTN6 518 aa12.33□□□□□ -0.44
SNRPF-202ENST00000549580 MS4A4AQ96JQ5 239 aa12.33□□□□□ -0.44
SNRPF-202ENST00000549580 ARSIQ5FYB1 569 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms