RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 VSIG10Q8N0Z9 540 aa8.94□□□□□ -0.98
LIMA1-203ENST00000547825 TARBP1Q13395 1621 aaKnown RBP8.93□□□□□ -0.98
LIMA1-203ENST00000547825 TPRNQ4KMQ1 711 aa8.93□□□□□ -0.98
LIMA1-203ENST00000547825 PAXIP1Q6ZW49 1069 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-203ENST00000547825 CFAP44Q96MT7 982 aa8.93□□□□□ -0.98
LIMA1-203ENST00000547825 URB2Q14146 1524 aaKnown RBP8.92□□□□□ -0.98
LIMA1-203ENST00000547825 BIVM-ERCC5R4GMW8 1640 aa8.91□□□□□ -0.98
LIMA1-203ENST00000547825 MRC2Q9UBG0 1479 aa8.91□□□□□ -0.98
LIMA1-203ENST00000547825 APLP2Q06481 763 aa8.9□□□□□ -0.98
LIMA1-203ENST00000547825 RGL2O15211 777 aa8.9□□□□□ -0.99
LIMA1-203ENST00000547825 ECM2O94769 699 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-203ENST00000547825 ABCB7O75027 752 aa8.89□□□□□ -0.99
LIMA1-203ENST00000547825 CAPN15O75808 1086 aa8.89□□□□□ -0.99
LIMA1-203ENST00000547825 KLHL34Q8N239 644 aa8.89□□□□□ -0.99
LIMA1-203ENST00000547825 PCGF6Q9BYE7 350 aa8.88□□□□□ -0.99
LIMA1-203ENST00000547825 DNMBPQ6XZF7 1577 aa8.88□□□□□ -0.99
LIMA1-203ENST00000547825 FANCD2Q9BXW9 1451 aa8.88□□□□□ -0.99
LIMA1-203ENST00000547825 PDS5BQ9NTI5 1447 aa8.87□□□□□ -0.99
LIMA1-203ENST00000547825 TSHZ2Q9NRE2 1034 aa8.86□□□□□ -0.99
LIMA1-203ENST00000547825 CEP164Q9UPV0 1460 aa8.85□□□□□ -0.99
LIMA1-203ENST00000547825 BBXQ8WY36 941 aaPredicted RBP8.85□□□□□ -0.99
LIMA1-203ENST00000547825 SPOCK2Q92563 424 aa8.83□□□□□ -1
LIMA1-203ENST00000547825 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.83□□□□□ -1
LIMA1-203ENST00000547825 TOPBP1Q92547 1522 aa8.82□□□□□ -1
LIMA1-203ENST00000547825 ABCA5Q8WWZ7 1642 aa8.81□□□□□ -1
LIMA1-203ENST00000547825 PPARGC1BQ86YN6 1023 aaKnown RBP8.81□□□□□ -1
LIMA1-203ENST00000547825 CUX1P39880 1505 aa8.8□□□□□ -1
LIMA1-203ENST00000547825 PBRM1Q86U86 1689 aa8.8□□□□□ -1
LIMA1-203ENST00000547825 TOP2BQ02880 1626 aa8.8□□□□□ -1
LIMA1-203ENST00000547825 EIF4G3O43432 1585 aaKnown RBP8.79□□□□□ -1
LIMA1-203ENST00000547825 ABCC8Q09428 1581 aa8.79□□□□□ -1
LIMA1-203ENST00000547825 ERCC6Q03468 1493 aa8.78□□□□□ -1
LIMA1-203ENST00000547825 RNF39Q9H2S5 420 aa8.77□□□□□ -1
LIMA1-203ENST00000547825 HRCP23327 699 aa8.76□□□□□ -1.01
LIMA1-203ENST00000547825 PLCD3Q8N3E9 789 aa8.76□□□□□ -1.01
LIMA1-203ENST00000547825 SYNJ1O43426 1573 aa8.75□□□□□ -1.01
LIMA1-203ENST00000547825 CHGAP10645 457 aaKnown RBP8.74□□□□□ -1.01
LIMA1-203ENST00000547825 ZNF692Q9BU19 519 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-203ENST00000547825 CHD1O14646 1710 aa8.74□□□□□ -1.01
LIMA1-203ENST00000547825 OSCARQ8IYS5 282 aa8.74□□□□□ -1.01
LIMA1-203ENST00000547825 SPRYD3Q8NCJ5 442 aa8.74□□□□□ -1.01
LIMA1-203ENST00000547825 POLA1P09884 1462 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-203ENST00000547825 MIER1Q8N108 512 aa8.72□□□□□ -1.01
LIMA1-203ENST00000547825 IFT140Q96RY7 1462 aa8.72□□□□□ -1.01
LIMA1-203ENST00000547825 CIZ1Q9ULV3 898 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-203ENST00000547825 ABCA10Q8WWZ4 1543 aa8.68□□□□□ -1.02
LIMA1-203ENST00000547825 CLASP1Q7Z460 1538 aa8.67□□□□□ -1.02
LIMA1-203ENST00000547825 ZNF608Q9ULD9 1512 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-203ENST00000547825 SHROOM2Q13796 1616 aa8.67□□□□□ -1.02
LIMA1-203ENST00000547825 FGD5Q6ZNL6 1462 aa8.65□□□□□ -1.02
LIMA1-203ENST00000547825 RNF25Q96BH1 459 aaPredicted RBP8.65□□□□□ -1.03
LIMA1-203ENST00000547825 SSUH2Q9Y2M2 353 aa8.64□□□□□ -1.03
LIMA1-203ENST00000547825 ZBTB12Q9Y330 459 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-203ENST00000547825 LOC105371045A0A1W2PR82 267 aa8.63□□□□□ -1.03
LIMA1-203ENST00000547825 ADAMTS12P58397 1594 aa8.63□□□□□ -1.03
LIMA1-203ENST00000547825 STAG3Q9UJ98 1225 aa8.63□□□□□ -1.03
LIMA1-203ENST00000547825 DSG3P32926 999 aa8.6□□□□□ -1.03
LIMA1-203ENST00000547825 ERICH3Q5RHP9 1530 aa8.6□□□□□ -1.03
LIMA1-203ENST00000547825 NKX1-1Q15270 411 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-203ENST00000547825 C1QBPQ07021 282 aaKnown RBP8.59□□□□□ -1.03
LIMA1-203ENST00000547825 TIMELESSQ9UNS1 1208 aa8.59□□□□□ -1.04
LIMA1-203ENST00000547825 RAD54L2Q9Y4B4 1467 aa8.58□□□□□ -1.04
LIMA1-203ENST00000547825 MAGI1Q96QZ7 1491 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-203ENST00000547825 SPDYE2BA6NHP3 402 aa8.58□□□□□ -1.04
LIMA1-203ENST00000547825 SPDYE6P0CI01 402 aa8.58□□□□□ -1.04
LIMA1-203ENST00000547825 SPDYE2Q495Y8 402 aa8.58□□□□□ -1.04
LIMA1-203ENST00000547825 CUL7Q14999 1698 aa8.57□□□□□ -1.04
LIMA1-203ENST00000547825 FAM9AQ8IZU1 332 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-203ENST00000547825 RIMBP3CA6NJZ7 1639 aa8.56□□□□□ -1.04
LIMA1-203ENST00000547825 RIMBP3BA6NNM3 1639 aa8.56□□□□□ -1.04
LIMA1-203ENST00000547825 RIMBP3Q9UFD9 1639 aa8.56□□□□□ -1.04
LIMA1-203ENST00000547825 DNAJC5Q9H3Z4 198 aa8.56□□□□□ -1.04
LIMA1-203ENST00000547825 CEP170Q5SW79 1584 aa8.55□□□□□ -1.04
LIMA1-203ENST00000547825 NBR1Q14596 966 aa8.55□□□□□ -1.04
LIMA1-203ENST00000547825 TTBK1Q5TCY1 1321 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-203ENST00000547825 RUSC2Q8N2Y8 1516 aa8.54□□□□□ -1.04
LIMA1-203ENST00000547825 HS6ST3Q8IZP7 471 aa8.54□□□□□ -1.04
LIMA1-203ENST00000547825 TULP1O00294 542 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-203ENST00000547825 WRNQ14191 1432 aaPredicted RBP eCLIP8.53□□□□□ -1.04
LIMA1-203ENST00000547825 GRIN2BQ13224 1484 aa8.52□□□□□ -1.05
LIMA1-203ENST00000547825 SOGA1O94964 1423 aa8.52□□□□□ -1.05
LIMA1-203ENST00000547825 SYNJ2O15056 1496 aa8.51□□□□□ -1.05
LIMA1-203ENST00000547825 AQRO60306 1485 aaKnown RBP eCLIP8.51□□□□□ -1.05
LIMA1-203ENST00000547825 PELP1Q8IZL8 1130 aaKnown RBP8.51□□□□□ -1.05
LIMA1-203ENST00000547825 NUP160Q12769 1436 aa8.5□□□□□ -1.05
LIMA1-203ENST00000547825 SNAPC4Q5SXM2 1469 aa8.5□□□□□ -1.05
LIMA1-203ENST00000547825 GAPVD1Q14C86 1478 aa8.49□□□□□ -1.05
LIMA1-203ENST00000547825 CTTNBP2Q8WZ74 1663 aa8.49□□□□□ -1.05
LIMA1-203ENST00000547825 GTPBP6O43824 516 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-203ENST00000547825 GRIN2AQ12879 1464 aa8.46□□□□□ -1.06
LIMA1-203ENST00000547825 ARHGEF11O15085 1522 aa8.45□□□□□ -1.06
LIMA1-203ENST00000547825 NUBP1P53384 320 aa8.44□□□□□ -1.06
LIMA1-203ENST00000547825 STK25O00506 426 aa8.42□□□□□ -1.06
LIMA1-203ENST00000547825 YTHDC1Q96MU7 727 aaKnown RBP8.42□□□□□ -1.06
LIMA1-203ENST00000547825 ERCC6L2Q5T890 1561 aa8.42□□□□□ -1.06
LIMA1-203ENST00000547825 PLEKHG5O94827 1062 aa8.42□□□□□ -1.06
LIMA1-203ENST00000547825 ZBTB47Q9UFB7 747 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-203ENST00000547825 FHAD1B1AJZ9 1412 aa8.41□□□□□ -1.06
LIMA1-203ENST00000547825 GTF3C3Q9Y5Q9 886 aa8.41□□□□□ -1.06
LIMA1-203ENST00000547825 ARAP1Q96P48 1450 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms