RNA–Protein interactions for RNA: ENST00000546276.5

NPC1L1-204, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 4,826 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-204ENST00000546276 BCL11AQ9H165 835 aa16.33■□□□□ 0.2
NPC1L1-204ENST00000546276 SIN3AQ96ST3 1273 aa16.32■□□□□ 0.2
NPC1L1-204ENST00000546276 KIF27Q86VH2 1401 aa16.32■□□□□ 0.2
NPC1L1-204ENST00000546276 CCNB3Q8WWL7 1395 aa16.3■□□□□ 0.2
NPC1L1-204ENST00000546276 PPP4R2Q9NY27 417 aa16.3■□□□□ 0.2
NPC1L1-204ENST00000546276 WDR43Q15061 677 aaKnown RBP eCLIP16.29■□□□□ 0.2
NPC1L1-204ENST00000546276 KDM2AQ9Y2K7 1162 aa16.28■□□□□ 0.2
NPC1L1-204ENST00000546276 ANP32BQ92688 251 aaKnown RBP16.28■□□□□ 0.2
NPC1L1-204ENST00000546276 VPS8Q8N3P4 1428 aa16.27■□□□□ 0.2
NPC1L1-204ENST00000546276 HSP90AA1P07900 732 aaKnown RBP16.26■□□□□ 0.19
NPC1L1-204ENST00000546276 BAZ1BQ9UIG0 1483 aaKnown RBP16.25■□□□□ 0.19
NPC1L1-204ENST00000546276 DDRGK1Q96HY6 314 aa16.25■□□□□ 0.19
NPC1L1-204ENST00000546276 TIMELESSQ9UNS1 1208 aa16.25■□□□□ 0.19
NPC1L1-204ENST00000546276 CCER2I3L3R5 266 aa16.24■□□□□ 0.19
NPC1L1-204ENST00000546276 TSPY4P0CV99 314 aa16.24■□□□□ 0.19
NPC1L1-204ENST00000546276 TSPY10P0CW01 314 aa16.24■□□□□ 0.19
NPC1L1-204ENST00000546276 RBM19Q9Y4C8 960 aaKnown RBP16.2■□□□□ 0.18
NPC1L1-204ENST00000546276 MROH2BQ7Z745 1585 aa16.2■□□□□ 0.18
NPC1L1-204ENST00000546276 GLIPR1L2Q4G1C9 344 aa16.2■□□□□ 0.18
NPC1L1-204ENST00000546276 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.2■□□□□ 0.183e-6■■□□□ 11.4
NPC1L1-204ENST00000546276 CCDC88BA6NC98 1476 aa16.19■□□□□ 0.18
NPC1L1-204ENST00000546276 NOP58Q9Y2X3 529 aaKnown RBP16.18■□□□□ 0.18
NPC1L1-204ENST00000546276 ABCC8Q09428 1581 aa16.17■□□□□ 0.18
NPC1L1-204ENST00000546276 PPM1GO15355 546 aaPredicted RBP16.15■□□□□ 0.18
NPC1L1-204ENST00000546276 SETD5Q9C0A6 1442 aa16.15■□□□□ 0.18
NPC1L1-204ENST00000546276 TSHZ2Q9NRE2 1034 aa16.15■□□□□ 0.18
NPC1L1-204ENST00000546276 CHGAP10645 457 aaKnown RBP16.14■□□□□ 0.17
NPC1L1-204ENST00000546276 B4GALNT3Q6L9W6 998 aa16.14■□□□□ 0.17
NPC1L1-204ENST00000546276 FHAD1B1AJZ9 1412 aa16.14■□□□□ 0.17
NPC1L1-204ENST00000546276 ARXQ96QS3 562 aa16.14■□□□□ 0.17
NPC1L1-204ENST00000546276 SENP3-EIF4A1A0A087X0R7 540 aa16.13■□□□□ 0.17
NPC1L1-204ENST00000546276 SLC24A1O60721 1099 aa16.13■□□□□ 0.17
NPC1L1-204ENST00000546276 BECN1Q14457 450 aa16.12■□□□□ 0.17
NPC1L1-204ENST00000546276 KANK4Q5T7N3 995 aaPredicted RBP16.12■□□□□ 0.17
NPC1L1-204ENST00000546276 CARD11Q9BXL7 1154 aa16.08■□□□□ 0.17
NPC1L1-204ENST00000546276 ERICH6BQ5W0A0 696 aa16.07■□□□□ 0.16
NPC1L1-204ENST00000546276 RAB3GAP2Q9H2M9 1393 aa16.06■□□□□ 0.16
NPC1L1-204ENST00000546276 LAS1LQ9Y4W2 734 aaKnown RBP16.06■□□□□ 0.16
NPC1L1-204ENST00000546276 CFDP1Q9UEE9 299 aaPredicted RBP16.03■□□□□ 0.16
NPC1L1-204ENST00000546276 CARMIL1Q5VZK9 1371 aa16.03■□□□□ 0.16
NPC1L1-204ENST00000546276 DEKP35659 375 aaKnown RBP16.02■□□□□ 0.16
NPC1L1-204ENST00000546276 HSPA5P11021 654 aaKnown RBP16.02■□□□□ 0.16
NPC1L1-204ENST00000546276 RGL3Q3MIN7 710 aa16.02■□□□□ 0.15
NPC1L1-204ENST00000546276 CHMP7Q8WUX9 453 aaPredicted RBP16.01■□□□□ 0.15
NPC1L1-204ENST00000546276 PLEKHD1A6NEE1 506 aa16■□□□□ 0.15
NPC1L1-204ENST00000546276 KNSTRNQ9Y448 316 aa16■□□□□ 0.15
NPC1L1-204ENST00000546276 ARHGAP35Q9NRY4 1499 aa16■□□□□ 0.15
NPC1L1-204ENST00000546276 CUX2O14529 1486 aa15.99■□□□□ 0.15
NPC1L1-204ENST00000546276 CDCA8Q53HL2 280 aa15.98■□□□□ 0.15
NPC1L1-204ENST00000546276 WIZO95785 1651 aa15.98■□□□□ 0.15
NPC1L1-204ENST00000546276 PPP1R15AO75807 674 aaPredicted RBP15.98■□□□□ 0.15
NPC1L1-204ENST00000546276 TOP2AP11388 1531 aaKnown RBP15.97■□□□□ 0.15
NPC1L1-204ENST00000546276 DHX57Q6P158 1386 aaKnown RBP15.96■□□□□ 0.15
NPC1L1-204ENST00000546276 RTN4Q9NQC3 1192 aaKnown RBP15.96■□□□□ 0.15
NPC1L1-204ENST00000546276 STAG3Q9UJ98 1225 aa15.95■□□□□ 0.14
NPC1L1-204ENST00000546276 MYH16Q9H6N6 1097 aa15.95■□□□□ 0.14
NPC1L1-204ENST00000546276 TRIM44Q96DX7 344 aaPredicted RBP15.94■□□□□ 0.14
NPC1L1-204ENST00000546276 RGS3P49796 1198 aa15.94■□□□□ 0.14
NPC1L1-204ENST00000546276 GOLGA6L22H0YM25 854 aa15.9■□□□□ 0.14
NPC1L1-204ENST00000546276 CFAP53Q96M91 514 aa15.89■□□□□ 0.14
NPC1L1-204ENST00000546276 CC2D1BQ5T0F9 858 aaKnown RBP15.89■□□□□ 0.13
NPC1L1-204ENST00000546276 RAPGEF2Q9Y4G8 1499 aa15.88■□□□□ 0.13
NPC1L1-204ENST00000546276 KCNH8Q96L42 1107 aa15.87■□□□□ 0.13
NPC1L1-204ENST00000546276 FTSJ3Q8IY81 847 aaKnown RBP15.85■□□□□ 0.13
NPC1L1-204ENST00000546276 DCAF11Q8TEB1 546 aa15.85■□□□□ 0.13
NPC1L1-204ENST00000546276 NPM1P06748 294 aaKnown RBP eCLIP15.84■□□□□ 0.13
NPC1L1-204ENST00000546276 ESF1Q9H501 851 aaKnown RBP15.84■□□□□ 0.13
NPC1L1-204ENST00000546276 RUSC2Q8N2Y8 1516 aa15.84■□□□□ 0.13
NPC1L1-204ENST00000546276 TCERG1O14776 1098 aaKnown RBP15.83■□□□□ 0.12
NPC1L1-204ENST00000546276 TMF1P82094 1093 aa15.82■□□□□ 0.12
NPC1L1-204ENST00000546276 NEUROD2Q15784 382 aa15.82■□□□□ 0.12
NPC1L1-204ENST00000546276 MPHOSPH9Q99550 1183 aa15.82■□□□□ 0.12
NPC1L1-204ENST00000546276 FOXD1Q16676 465 aa15.82■□□□□ 0.12
NPC1L1-204ENST00000546276 FRAT1Q92837 279 aaPredicted RBP15.82■□□□□ 0.12
NPC1L1-204ENST00000546276 NUDCQ9Y266 331 aa15.82■□□□□ 0.12
NPC1L1-204ENST00000546276 FMN1Q68DA7 1419 aa15.82■□□□□ 0.12
NPC1L1-204ENST00000546276 RCAN3Q9UKA8 241 aa15.81■□□□□ 0.12
NPC1L1-204ENST00000546276 SMARCA2P51531 1590 aa15.81■□□□□ 0.12
NPC1L1-204ENST00000546276 IPO9Q96P70 1041 aaKnown RBP15.8■□□□□ 0.12
NPC1L1-204ENST00000546276 KTN1Q86UP2 1357 aaKnown RBP15.79■□□□□ 0.12
NPC1L1-204ENST00000546276 NAP1L5Q96NT1 182 aaPredicted RBP15.79■□□□□ 0.12
NPC1L1-204ENST00000546276 NCLP19338 710 aaKnown RBP15.78■□□□□ 0.12
NPC1L1-204ENST00000546276 EIF4G1Q04637 1599 aaKnown RBP15.78■□□□□ 0.12
NPC1L1-204ENST00000546276 RALBP1Q15311 655 aa15.78■□□□□ 0.12
NPC1L1-204ENST00000546276 PKD2Q13563 968 aa15.77■□□□□ 0.12
NPC1L1-204ENST00000546276 L3MBTL2Q969R5 705 aa15.77■□□□□ 0.11
NPC1L1-204ENST00000546276 MS4A1P11836 297 aa15.75■□□□□ 0.11
NPC1L1-204ENST00000546276 MAPK8IP3Q9UPT6 1336 aa15.74■□□□□ 0.11
NPC1L1-204ENST00000546276 L1TD1Q5T7N2 865 aaKnown RBP15.74■□□□□ 0.11
NPC1L1-204ENST00000546276 CASC1Q6TDU7 716 aa15.72■□□□□ 0.11
NPC1L1-204ENST00000546276 FANCIQ9NVI1 1328 aa15.72■□□□□ 0.11
NPC1L1-204ENST00000546276 PTMAP06454 111 aaKnown RBP15.71■□□□□ 0.1
NPC1L1-204ENST00000546276 HSP90AB1P08238 724 aaKnown RBP15.7■□□□□ 0.1
NPC1L1-204ENST00000546276 FHOD3Q2V2M9 1422 aa15.7■□□□□ 0.1
NPC1L1-204ENST00000546276 TNNT2P45379 298 aaPredicted RBP15.7■□□□□ 0.1
NPC1L1-204ENST00000546276 CHMP4BQ9H444 224 aaKnown RBP15.69■□□□□ 0.1
NPC1L1-204ENST00000546276 HSCBQ8IWL3 235 aa15.69■□□□□ 0.1
NPC1L1-204ENST00000546276 SMARCA4P51532 1647 aa15.68■□□□□ 0.1
NPC1L1-204ENST00000546276 PDE3BQ13370 1112 aa15.67■□□□□ 0.1
NPC1L1-204ENST00000546276 ROCK2O75116 1388 aaKnown RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms