RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	PAK3	O75914	559 aa	Predicted RBP	14.1	□□□□□ -0.15
LEMD3-205	ENST00000544506	DCAF8L2	P0C7V8	631 aa		14.09	□□□□□ -0.15
LEMD3-205	ENST00000544506	PYGB	P11216	843 aa		14.09	□□□□□ -0.15
LEMD3-205	ENST00000544506	CD44	P16070	742 aa	Known RBP	14.09	□□□□□ -0.15
LEMD3-205	ENST00000544506	CCDC61	Q9Y6R9	512 aa		14.08	□□□□□ -0.16
LEMD3-205	ENST00000544506	C19orf67	A6NJJ6	358 aa		14.05	□□□□□ -0.16
LEMD3-205	ENST00000544506	CHRM1	P11229	460 aa	Predicted RBP	14.05	□□□□□ -0.16
LEMD3-205	ENST00000544506	RNF25	Q96BH1	459 aa	Predicted RBP	14.05	□□□□□ -0.16
LEMD3-205	ENST00000544506	ZRANB1	Q9UGI0	708 aa		14.03	□□□□□ -0.16
LEMD3-205	ENST00000544506	POTEH	Q6S545	545 aa		13.97	□□□□□ -0.17
LEMD3-205	ENST00000544506	RIOK3	O14730	519 aa	Known RBP	13.96	□□□□□ -0.17
LEMD3-205	ENST00000544506	HAX1	O00165	279 aa		13.95	□□□□□ -0.18
LEMD3-205	ENST00000544506	PHF12	Q96QT6	1004 aa		13.93	□□□□□ -0.18
LEMD3-205	ENST00000544506	ZNF579	Q8NAF0	562 aa	Known RBP	13.92	□□□□□ -0.18
LEMD3-205	ENST00000544506	KIF12	Q96FN5	646 aa		13.92	□□□□□ -0.18
LEMD3-205	ENST00000544506	MAP3K13	O43283	966 aa		13.89	□□□□□ -0.19
LEMD3-205	ENST00000544506	VGF	O15240	615 aa	Predicted RBP	13.88	□□□□□ -0.19
LEMD3-205	ENST00000544506	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.88	□□□□□ -0.19
LEMD3-205	ENST00000544506	PCDHB13	Q9Y5F0	798 aa		13.88	□□□□□ -0.19
LEMD3-205	ENST00000544506	EVX2	Q03828	476 aa		13.87	□□□□□ -0.19
LEMD3-205	ENST00000544506	PCDHB8	Q9UN66	801 aa		13.87	□□□□□ -0.19
LEMD3-205	ENST00000544506	TAOK2	Q9UL54	1235 aa		13.86	□□□□□ -0.19
LEMD3-205	ENST00000544506	CHGA	P10645	457 aa	Known RBP	13.85	□□□□□ -0.19
LEMD3-205	ENST00000544506	SGIP1	Q9BQI5	828 aa		13.85	□□□□□ -0.19
LEMD3-205	ENST00000544506	IFNL1	Q8IU54	200 aa		13.84	□□□□□ -0.19
LEMD3-205	ENST00000544506	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.81	□□□□□ -0.2
LEMD3-205	ENST00000544506	HS6ST3	Q8IZP7	471 aa		13.81	□□□□□ -0.2
LEMD3-205	ENST00000544506	ZFP91	Q96JP5	570 aa	Predicted RBP	13.81	□□□□□ -0.2
LEMD3-205	ENST00000544506	MS4A3	Q96HJ5	214 aa		13.78	□□□□□ -0.2
LEMD3-205	ENST00000544506	STK25	O00506	426 aa		13.77	□□□□□ -0.21
LEMD3-205	ENST00000544506	PDAP1	Q13442	181 aa	Known RBP	13.77	□□□□□ -0.21
LEMD3-205	ENST00000544506	BBX	Q8WY36	941 aa	Predicted RBP	13.75	□□□□□ -0.21
LEMD3-205	ENST00000544506	PSEN1	P49768	467 aa		13.74	□□□□□ -0.21
LEMD3-205	ENST00000544506	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.74	□□□□□ -0.21
LEMD3-205	ENST00000544506	STK24	Q9Y6E0	443 aa		13.73	□□□□□ -0.21
LEMD3-205	ENST00000544506	GALR2	O43603	387 aa	Predicted RBP	13.69	□□□□□ -0.22
LEMD3-205	ENST00000544506	TRPC6	Q9Y210	931 aa		13.69	□□□□□ -0.22
LEMD3-205	ENST00000544506	DNAJC5	Q9H3Z4	198 aa		13.68	□□□□□ -0.22
LEMD3-205	ENST00000544506	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.68	□□□□□ -0.22
LEMD3-205	ENST00000544506	CLCN6	P51797	869 aa		13.66	□□□□□ -0.22
LEMD3-205	ENST00000544506	PLCB2	Q00722	1185 aa		13.64	□□□□□ -0.23
LEMD3-205	ENST00000544506	NKX1-1	Q15270	411 aa	Predicted RBP	13.63	□□□□□ -0.23
LEMD3-205	ENST00000544506	TMEM106C	Q9BVX2	250 aa		13.61	□□□□□ -0.23
LEMD3-205	ENST00000544506	GABBR2	O75899	941 aa		13.6	□□□□□ -0.23
LEMD3-205	ENST00000544506	TIE1	P35590	1138 aa		13.59	□□□□□ -0.23
LEMD3-205	ENST00000544506	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.59	□□□□□ -0.23
LEMD3-205	ENST00000544506	CABP2	Q9NPB3	220 aa		13.58	□□□□□ -0.24
LEMD3-205	ENST00000544506	CFAP44	Q96MT7	982 aa		13.57	□□□□□ -0.24
LEMD3-205	ENST00000544506	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.57	□□□□□ -0.24
LEMD3-205	ENST00000544506	TTLL13P	A6NNM8	815 aa		13.56	□□□□□ -0.24
LEMD3-205	ENST00000544506	SPRYD3	Q8NCJ5	442 aa		13.55	□□□□□ -0.24
LEMD3-205	ENST00000544506	SLC24A1	O60721	1099 aa		13.54	□□□□□ -0.24
LEMD3-205	ENST00000544506	EFCAB3	Q8N7B9	438 aa		13.53	□□□□□ -0.24
LEMD3-205	ENST00000544506	SP7	Q8TDD2	431 aa	Predicted RBP	13.53	□□□□□ -0.24
LEMD3-205	ENST00000544506	GTPBP6	O43824	516 aa	Predicted RBP	13.49	□□□□□ -0.25
LEMD3-205	ENST00000544506	GOLGA2	Q08379	1002 aa		13.48	□□□□□ -0.25
LEMD3-205	ENST00000544506	MFRP	Q9BY79	579 aa		13.47	□□□□□ -0.25
LEMD3-205	ENST00000544506	TRIM35	Q9UPQ4	493 aa		13.47	□□□□□ -0.25
LEMD3-205	ENST00000544506	ATMIN	O43313	823 aa	Predicted RBP	13.46	□□□□□ -0.25
LEMD3-205	ENST00000544506	ATN1	P54259	1190 aa	Predicted RBP	13.46	□□□□□ -0.25
LEMD3-205	ENST00000544506	ASTL	Q6HA08	431 aa	Predicted RBP	13.46	□□□□□ -0.25
LEMD3-205	ENST00000544506	HAP1	P54257	671 aa	Predicted RBP	13.45	□□□□□ -0.26
LEMD3-205	ENST00000544506	SOX12	O15370	315 aa		13.44	□□□□□ -0.26
LEMD3-205	ENST00000544506	MKRN3	Q13064	507 aa	Known RBP	13.43	□□□□□ -0.26
LEMD3-205	ENST00000544506	RYDEN	Q9NUL5	291 aa	Known RBP	13.43	□□□□□ -0.26
LEMD3-205	ENST00000544506	PHF8	Q9UPP1	1060 aa		13.43	□□□□□ -0.26
LEMD3-205	ENST00000544506	DCBLD2	Q96PD2	775 aa		13.42	□□□□□ -0.26
LEMD3-205	ENST00000544506	FBXO22	Q8NEZ5	403 aa		13.4	□□□□□ -0.26
LEMD3-205	ENST00000544506	NLRP6	P59044	892 aa		13.39	□□□□□ -0.27
LEMD3-205	ENST00000544506	POTEI	P0CG38	1075 aa		13.34	□□□□□ -0.27
LEMD3-205	ENST00000544506	MS4A4A	Q96JQ5	239 aa		13.34	□□□□□ -0.27
LEMD3-205	ENST00000544506	TSHZ2	Q9NRE2	1034 aa		13.34	□□□□□ -0.27
LEMD3-205	ENST00000544506	PELP1	Q8IZL8	1130 aa	Known RBP	13.33	□□□□□ -0.28
LEMD3-205	ENST00000544506	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
LEMD3-205	ENST00000544506	IER5L	Q5T953	404 aa		13.31	□□□□□ -0.28
LEMD3-205	ENST00000544506	ILDR1	Q86SU0	546 aa	Predicted RBP	13.31	□□□□□ -0.28
LEMD3-205	ENST00000544506	PPP1R37	O75864	691 aa		13.3	□□□□□ -0.28
LEMD3-205	ENST00000544506	IRX5	P78411	483 aa	Predicted RBP	13.28	□□□□□ -0.28
LEMD3-205	ENST00000544506	PDCD7	Q8N8D1	485 aa	Known RBP	13.25	□□□□□ -0.29
LEMD3-205	ENST00000544506	SLC39A7	Q92504	469 aa		13.24	□□□□□ -0.29
LEMD3-205	ENST00000544506	OCEL1	Q9H607	264 aa		13.23	□□□□□ -0.29
LEMD3-205	ENST00000544506	PLCG2	P16885	1265 aa		13.21	□□□□□ -0.29
LEMD3-205	ENST00000544506	DPY19L2	Q6NUT2	758 aa		13.21	□□□□□ -0.29
LEMD3-205	ENST00000544506	VSIG10	Q8N0Z9	540 aa		13.21	□□□□□ -0.29
LEMD3-205	ENST00000544506	C7	P10643	843 aa		13.2	□□□□□ -0.3
LEMD3-205	ENST00000544506	METRN	Q9UJH8	293 aa		13.2	□□□□□ -0.3
LEMD3-205	ENST00000544506	SEC24B	O95487	1268 aa		13.19	□□□□□ -0.3
LEMD3-205	ENST00000544506	COLQ	Q9Y215	455 aa	Predicted RBP	13.19	□□□□□ -0.3
LEMD3-205	ENST00000544506	KDM2A	Q9Y2K7	1162 aa		13.18	□□□□□ -0.3
LEMD3-205	ENST00000544506	POTEF	A5A3E0	1075 aa		13.17	□□□□□ -0.3
LEMD3-205	ENST00000544506	CADPS2	Q86UW7	1296 aa		13.17	□□□□□ -0.3
LEMD3-205	ENST00000544506	MICALL2	Q8IY33	904 aa		13.1	□□□□□ -0.31
LEMD3-205	ENST00000544506	BOLA1	Q9Y3E2	137 aa		13.09	□□□□□ -0.31
LEMD3-205	ENST00000544506	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.06	□□□□□ -0.32
LEMD3-205	ENST00000544506		G3V3G9	751 aa		13.05	□□□□□ -0.32
LEMD3-205	ENST00000544506	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.05	□□□□□ -0.32
LEMD3-205	ENST00000544506	NCKAP5L	Q9HCH0	1330 aa		13.03	□□□□□ -0.32
LEMD3-205	ENST00000544506	CRISPLD2	Q9H0B8	497 aa		13	□□□□□ -0.33
LEMD3-205	ENST00000544506	PDE4A	P27815	886 aa		12.97	□□□□□ -0.33
LEMD3-205	ENST00000544506	WDR70	Q9NW82	654 aa		12.96	□□□□□ -0.33

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