RNA–Protein interactions for RNA: ENST00000536999.1

CHD4-206, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 318 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-206ENST00000536999 ADGRL1O94910 1474 aa8.95□□□□□ -0.98
CHD4-206ENST00000536999 RAD54L2Q9Y4B4 1467 aa8.95□□□□□ -0.98
CHD4-206ENST00000536999 SOGA1O94964 1423 aa8.93□□□□□ -0.98
CHD4-206ENST00000536999 TOP2AP11388 1531 aaKnown RBP8.92□□□□□ -0.98
CHD4-206ENST00000536999 ABCC10Q5T3U5 1492 aa8.92□□□□□ -0.98
CHD4-206ENST00000536999 GRIN2BQ13224 1484 aa8.91□□□□□ -0.98
CHD4-206ENST00000536999 CENPBP07199 599 aaPredicted RBP8.91□□□□□ -0.98
CHD4-206ENST00000536999 ILDR2Q71H61 639 aa8.9□□□□□ -0.98
CHD4-206ENST00000536999 DISP3Q9P2K9 1392 aa8.89□□□□□ -0.99
CHD4-206ENST00000536999 NPM1P06748 294 aaKnown RBP eCLIP8.89□□□□□ -0.99
CHD4-206ENST00000536999 WDR97A6NE52 1622 aa8.89□□□□□ -0.99
CHD4-206ENST00000536999 CEP170Q5SW79 1584 aa8.86□□□□□ -0.99
CHD4-206ENST00000536999 DIP2BQ9P265 1576 aa8.86□□□□□ -0.99
CHD4-206ENST00000536999 LOC105371045A0A1W2PR82 267 aa8.85□□□□□ -0.99
CHD4-206ENST00000536999 PPARGC1BQ86YN6 1023 aaKnown RBP8.85□□□□□ -0.99
CHD4-206ENST00000536999 TSPOAP1O95153 1857 aa8.83□□□□□ -1
CHD4-206ENST00000536999 CCDC88BA6NC98 1476 aa8.83□□□□□ -1
CHD4-206ENST00000536999 MAPKBP1O60336 1514 aa8.82□□□□□ -1
CHD4-206ENST00000536999 FGD5Q6ZNL6 1462 aa8.82□□□□□ -1
CHD4-206ENST00000536999 POTEDQ86YR6 584 aa8.81□□□□□ -1
CHD4-206ENST00000536999 PBRM1Q86U86 1689 aa8.79□□□□□ -1
CHD4-206ENST00000536999 GRIN2AQ12879 1464 aa8.79□□□□□ -1
CHD4-206ENST00000536999 CLSPNQ9HAW4 1339 aa8.78□□□□□ -1
CHD4-206ENST00000536999 NUP160Q12769 1436 aa8.77□□□□□ -1.01
CHD4-206ENST00000536999 PRG4Q92954 1404 aaPredicted RBP8.77□□□□□ -1.01
CHD4-206ENST00000536999 SHROOM2Q13796 1616 aa8.76□□□□□ -1.01
CHD4-206ENST00000536999 ACIN1Q9UKV3 1341 aaKnown RBP8.75□□□□□ -1.01
CHD4-206ENST00000536999 TOP2BQ02880 1626 aa8.74□□□□□ -1.01
CHD4-206ENST00000536999 ADCY10Q96PN6 1610 aa8.72□□□□□ -1.01
CHD4-206ENST00000536999 EEA1Q15075 1411 aa8.71□□□□□ -1.01
CHD4-206ENST00000536999 SPATA31D1Q6ZQQ2 1576 aa8.71□□□□□ -1.02
CHD4-206ENST00000536999 CCER1Q8TC90 406 aaPredicted RBP8.71□□□□□ -1.02
CHD4-206ENST00000536999 JPH4Q96JJ6 628 aa8.71□□□□□ -1.02
CHD4-206ENST00000536999 PPP4R3CPQ6ZMV5 832 aa8.7□□□□□ -1.02
CHD4-206ENST00000536999 ADAMTS12P58397 1594 aa8.69□□□□□ -1.02
CHD4-206ENST00000536999 TTBK1Q5TCY1 1321 aaPredicted RBP8.69□□□□□ -1.02
CHD4-206ENST00000536999 SCAF1Q9H7N4 1312 aaKnown RBP8.69□□□□□ -1.02
CHD4-206ENST00000536999 WRNQ14191 1432 aaPredicted RBP eCLIP8.69□□□□□ -1.02
CHD4-206ENST00000536999 CUX1P39880 1505 aa8.69□□□□□ -1.02
CHD4-206ENST00000536999 ABCA5Q8WWZ7 1642 aa8.69□□□□□ -1.02
CHD4-206ENST00000536999 CERKQ8TCT0 537 aa8.68□□□□□ -1.02
CHD4-206ENST00000536999 COL17A1Q9UMD9 1497 aaPredicted RBP8.68□□□□□ -1.02
CHD4-206ENST00000536999 DIEXFQ68CQ4 756 aaKnown RBP8.67□□□□□ -1.02
CHD4-206ENST00000536999 ABCA10Q8WWZ4 1543 aa8.67□□□□□ -1.02
CHD4-206ENST00000536999 FHAD1B1AJZ9 1412 aa8.66□□□□□ -1.02
CHD4-206ENST00000536999 PPRC1Q5VV67 1664 aaKnown RBP8.65□□□□□ -1.03
CHD4-206ENST00000536999 MAPK8IP2Q13387 824 aaPredicted RBP8.64□□□□□ -1.03
CHD4-206ENST00000536999 TEX14Q8IWB6 1497 aa8.64□□□□□ -1.03
CHD4-206ENST00000536999 PLB1Q6P1J6 1458 aa8.63□□□□□ -1.03
CHD4-206ENST00000536999 ASXL2Q76L83 1435 aa8.63□□□□□ -1.03
CHD4-206ENST00000536999 GLI2P10070 1586 aa8.62□□□□□ -1.03
CHD4-206ENST00000536999 PCF11O94913 1555 aaKnown RBP8.61□□□□□ -1.03
CHD4-206ENST00000536999 PTPRMP28827 1452 aa8.6□□□□□ -1.03
CHD4-206ENST00000536999 ZNF316A6NFI3 1004 aaPredicted RBP8.6□□□□□ -1.03
CHD4-206ENST00000536999 TNIKQ9UKE5 1360 aa8.6□□□□□ -1.03
CHD4-206ENST00000536999 RUSC2Q8N2Y8 1516 aa8.58□□□□□ -1.04
CHD4-206ENST00000536999 ABCC2Q92887 1545 aa8.58□□□□□ -1.04
CHD4-206ENST00000536999 HSPA2P54652 639 aa8.57□□□□□ -1.04
CHD4-206ENST00000536999 PTPRGP23470 1445 aa8.56□□□□□ -1.04
CHD4-206ENST00000536999 KIF21BO75037 1637 aa8.56□□□□□ -1.04
CHD4-206ENST00000536999 GTF3C3Q9Y5Q9 886 aa8.56□□□□□ -1.04
CHD4-206ENST00000536999 EPRSP07814 1512 aaKnown RBP8.55□□□□□ -1.04
CHD4-206ENST00000536999 ERICH3Q5RHP9 1530 aa8.54□□□□□ -1.04
CHD4-206ENST00000536999 MAP3K4Q9Y6R4 1608 aa8.54□□□□□ -1.04
CHD4-206ENST00000536999 FAM9AQ8IZU1 332 aaPredicted RBP8.54□□□□□ -1.04
CHD4-206ENST00000536999 NEUROD1Q13562 356 aa8.53□□□□□ -1.04
CHD4-206ENST00000536999 KIAA0586Q9BVV6 1533 aa8.53□□□□□ -1.04
CHD4-206ENST00000536999 APLP2Q06481 763 aa8.51□□□□□ -1.05
CHD4-206ENST00000536999 ARID4BQ4LE39 1312 aaPredicted RBP8.51□□□□□ -1.05
CHD4-206ENST00000536999 CUL7Q14999 1698 aa8.5□□□□□ -1.05
CHD4-206ENST00000536999 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.5□□□□□ -1.05
CHD4-206ENST00000536999 CSRNP3Q8WYN3 585 aa8.5□□□□□ -1.05
CHD4-206ENST00000536999 DMRT2Q9Y5R5 561 aa8.5□□□□□ -1.05
CHD4-206ENST00000536999 ADAMTSL3P82987 1691 aa8.49□□□□□ -1.05
CHD4-206ENST00000536999 CEP162Q5TB80 1403 aa8.47□□□□□ -1.05
CHD4-206ENST00000536999 KCNA4P22459 653 aa8.47□□□□□ -1.05
CHD4-206ENST00000536999 MADDQ8WXG6 1647 aa8.47□□□□□ -1.05
CHD4-206ENST00000536999 CARMIL2Q6F5E8 1435 aa8.46□□□□□ -1.05
CHD4-206ENST00000536999 UACAQ9BZF9 1416 aa8.46□□□□□ -1.05
CHD4-206ENST00000536999 UHRF1BP1LA0JNW5 1464 aa8.46□□□□□ -1.05
CHD4-206ENST00000536999 GOLGA3Q08378 1498 aa8.46□□□□□ -1.05
CHD4-206ENST00000536999 CD109Q6YHK3 1445 aa8.46□□□□□ -1.06
CHD4-206ENST00000536999 MAGI3Q5TCQ9 1506 aa8.44□□□□□ -1.06
CHD4-206ENST00000536999 WDR7Q9Y4E6 1490 aa8.44□□□□□ -1.06
CHD4-206ENST00000536999 UBTFP17480 764 aaKnown RBP8.43□□□□□ -1.06
CHD4-206ENST00000536999 KDM5BQ9UGL1 1544 aa8.43□□□□□ -1.06
CHD4-206ENST00000536999 BCORL1Q5H9F3 1711 aa8.43□□□□□ -1.06
CHD4-206ENST00000536999 NCBP3Q53F19 620 aaKnown RBP8.42□□□□□ -1.06
CHD4-206ENST00000536999 CNKSR2Q8WXI2 1034 aa8.42□□□□□ -1.06
CHD4-206ENST00000536999 KCNH8Q96L42 1107 aa8.42□□□□□ -1.06
CHD4-206ENST00000536999 RIMS1Q86UR5 1692 aaKnown RBP8.42□□□□□ -1.06
CHD4-206ENST00000536999 ZCCHC11Q5TAX3 1644 aaKnown RBP8.41□□□□□ -1.06
CHD4-206ENST00000536999 CFAP43Q8NDM7 1665 aa8.4□□□□□ -1.07
CHD4-206ENST00000536999 ARAP3Q8WWN8 1544 aa8.39□□□□□ -1.07
CHD4-206ENST00000536999 YEATS2Q9ULM3 1422 aa8.39□□□□□ -1.07
CHD4-206ENST00000536999 RAPGEF3O95398 923 aa8.37□□□□□ -1.07
CHD4-206ENST00000536999 BIVM-ERCC5R4GMW8 1640 aa8.36□□□□□ -1.07
CHD4-206ENST00000536999 UBAP1LF5GYI3 381 aa8.36□□□□□ -1.07
CHD4-206ENST00000536999 TIMELESSQ9UNS1 1208 aa8.36□□□□□ -1.07
CHD4-206ENST00000536999 IQSEC2Q5JU85 1478 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms