RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 ZBTB47Q9UFB7 747 aaPredicted RBP7.37□□□□□ -1.23
CHMP4A-208ENST00000534106 CCDC61Q9Y6R9 512 aa7.37□□□□□ -1.23
CHMP4A-208ENST00000534106 RASEFQ8IZ41 740 aa7.35□□□□□ -1.23
CHMP4A-208ENST00000534106 PELP1Q8IZL8 1130 aaKnown RBP7.35□□□□□ -1.23
CHMP4A-208ENST00000534106 SLC39A7Q92504 469 aa7.35□□□□□ -1.23
CHMP4A-208ENST00000534106 ATMINO43313 823 aaPredicted RBP7.34□□□□□ -1.23
CHMP4A-208ENST00000534106 ASTLQ6HA08 431 aaPredicted RBP7.34□□□□□ -1.23
CHMP4A-208ENST00000534106 KIF12Q96FN5 646 aa7.34□□□□□ -1.23
CHMP4A-208ENST00000534106 METRNQ9UJH8 293 aa7.34□□□□□ -1.23
CHMP4A-208ENST00000534106 POTEB2H3BUK9 544 aa7.32□□□□□ -1.24
CHMP4A-208ENST00000534106 MAP3K13O43283 966 aa7.32□□□□□ -1.24
CHMP4A-208ENST00000534106 C7P10643 843 aa7.32□□□□□ -1.24
CHMP4A-208ENST00000534106 OTUD5Q96G74 571 aa7.31□□□□□ -1.24
CHMP4A-208ENST00000534106 ATN1P54259 1190 aaPredicted RBP7.3□□□□□ -1.24
CHMP4A-208ENST00000534106 ABCC9O60706 1549 aa7.28□□□□□ -1.24
CHMP4A-208ENST00000534106 FAM212AQ96EL1 285 aa7.28□□□□□ -1.24
CHMP4A-208ENST00000534106 TIE1P35590 1138 aa7.27□□□□□ -1.25
CHMP4A-208ENST00000534106 BMP2KQ9NSY1 1161 aaPredicted RBP7.27□□□□□ -1.25
CHMP4A-208ENST00000534106 FBXO3Q9UK99 471 aa7.27□□□□□ -1.25
CHMP4A-208ENST00000534106 TRPC6Q9Y210 931 aa7.27□□□□□ -1.25
CHMP4A-208ENST00000534106 PCDHB13Q9Y5F0 798 aa7.27□□□□□ -1.25
CHMP4A-208ENST00000534106 MAMSTRQ6ZN01 415 aa7.26□□□□□ -1.25
CHMP4A-208ENST00000534106 SEC24BO95487 1268 aa7.25□□□□□ -1.25
CHMP4A-208ENST00000534106 NUBP1P53384 320 aa7.25□□□□□ -1.25
CHMP4A-208ENST00000534106 DCAF8Q5TAQ9 597 aa7.25□□□□□ -1.25
CHMP4A-208ENST00000534106 SCUBE2Q9NQ36 999 aa7.24□□□□□ -1.25
CHMP4A-208ENST00000534106 KLHL34Q8N239 644 aa7.23□□□□□ -1.25
CHMP4A-208ENST00000534106 SGIP1Q9BQI5 828 aa7.23□□□□□ -1.25
CHMP4A-208ENST00000534106 TTLL13PA6NNM8 815 aa7.22□□□□□ -1.25
CHMP4A-208ENST00000534106 PLSCR2Q9NRY7 297 aa7.21□□□□□ -1.26
CHMP4A-208ENST00000534106 TRIM35Q9UPQ4 493 aa7.2□□□□□ -1.26
CHMP4A-208ENST00000534106 IFNL1Q8IU54 200 aa7.19□□□□□ -1.26
CHMP4A-208ENST00000534106 POTEJP0CG39 1038 aa7.18□□□□□ -1.26
CHMP4A-208ENST00000534106 PYGBP11216 843 aa7.18□□□□□ -1.26
CHMP4A-208ENST00000534106 POTEMA6NI47 508 aa7.17□□□□□ -1.26
CHMP4A-208ENST00000534106 TMEM106CQ9BVX2 250 aa7.17□□□□□ -1.26
CHMP4A-208ENST00000534106 POTEFA5A3E0 1075 aa7.16□□□□□ -1.26
CHMP4A-208ENST00000534106 FAM163AQ96GL9 167 aaPredicted RBP7.16□□□□□ -1.26
CHMP4A-208ENST00000534106 POTEGQ6S5H5 508 aa7.15□□□□□ -1.26
CHMP4A-208ENST00000534106 VASPP50552 380 aaPredicted RBP7.14□□□□□ -1.27
CHMP4A-208ENST00000534106 IER5LQ5T953 404 aa7.14□□□□□ -1.27
CHMP4A-208ENST00000534106 COLQQ9Y215 455 aaPredicted RBP7.14□□□□□ -1.27
CHMP4A-208ENST00000534106 PLCG2P16885 1265 aa7.13□□□□□ -1.27
CHMP4A-208ENST00000534106 GSE1Q14687 1217 aa7.13□□□□□ -1.27
CHMP4A-208ENST00000534106 PCDHB8Q9UN66 801 aa7.11□□□□□ -1.27
CHMP4A-208ENST00000534106 GOLGA2Q08379 1002 aa7.09□□□□□ -1.27
CHMP4A-208ENST00000534106 ZNF467Q7Z7K2 595 aaPredicted RBP7.07□□□□□ -1.28
CHMP4A-208ENST00000534106 SLAIN1Q8ND83 568 aa7.07□□□□□ -1.28
CHMP4A-208ENST00000534106 CIZ1Q9ULV3 898 aaPredicted RBP7.06□□□□□ -1.28
CHMP4A-208ENST00000534106 OCEL1Q9H607 264 aa7.05□□□□□ -1.28
CHMP4A-208ENST00000534106 IRX5P78411 483 aaPredicted RBP7.04□□□□□ -1.28
CHMP4A-208ENST00000534106 MKRN3Q13064 507 aaKnown RBP7.04□□□□□ -1.28
CHMP4A-208ENST00000534106 PCDH10Q9P2E7 1040 aa7.04□□□□□ -1.28
CHMP4A-208ENST00000534106 SPOCK2Q92563 424 aa7.03□□□□□ -1.28
CHMP4A-208ENST00000534106 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.01□□□□□ -1.29
CHMP4A-208ENST00000534106 PSEN1P49768 467 aa7□□□□□ -1.29
CHMP4A-208ENST00000534106 LCE2DQ5TA82 110 aaPredicted RBP7□□□□□ -1.29
CHMP4A-208ENST00000534106 CHRM1P11229 460 aaPredicted RBP6.99□□□□□ -1.29
CHMP4A-208ENST00000534106 IFNLR1Q8IU57 520 aaPredicted RBP6.99□□□□□ -1.29
CHMP4A-208ENST00000534106 C3orf67Q6ZVT6 689 aa6.97□□□□□ -1.29
CHMP4A-208ENST00000534106 L3MBTL3Q96JM7 780 aaPredicted RBP6.97□□□□□ -1.29
CHMP4A-208ENST00000534106 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.97□□□□□ -1.293e-7■■■■■ 26.8
CHMP4A-208ENST00000534106 SNPHO15079 494 aa6.96□□□□□ -1.3
CHMP4A-208ENST00000534106 ST18O60284 1047 aa6.96□□□□□ -1.3
CHMP4A-208ENST00000534106 PDAP1Q13442 181 aaKnown RBP6.96□□□□□ -1.3
CHMP4A-208ENST00000534106 G3V3G9 751 aa6.95□□□□□ -1.3
CHMP4A-208ENST00000534106 CDAN1Q8IWY9 1227 aa6.94□□□□□ -1.3
CHMP4A-208ENST00000534106 CABP2Q9NPB3 220 aa6.93□□□□□ -1.3
CHMP4A-208ENST00000534106 PDCD7Q8N8D1 485 aaKnown RBP6.91□□□□□ -1.3
CHMP4A-208ENST00000534106 TRIM41Q8WV44 630 aa6.88□□□□□ -1.31
CHMP4A-208ENST00000534106 TMEM121BQ9BXQ6 578 aaPredicted RBP6.87□□□□□ -1.31
CHMP4A-208ENST00000534106 DPY19L2Q6NUT2 758 aa6.86□□□□□ -1.31
CHMP4A-208ENST00000534106 MARVELD3Q96A59 401 aa6.86□□□□□ -1.31
CHMP4A-208ENST00000534106 BOLA1Q9Y3E2 137 aa6.85□□□□□ -1.31
CHMP4A-208ENST00000534106 EMP3P54852 163 aa6.83□□□□□ -1.32
CHMP4A-208ENST00000534106 EFCAB3Q8N7B9 438 aa6.83□□□□□ -1.32
CHMP4A-208ENST00000534106 ILDR1Q86SU0 546 aaPredicted RBP6.8□□□□□ -1.32
CHMP4A-208ENST00000534106 ZNF710Q8N1W2 664 aa6.8□□□□□ -1.32
CHMP4A-208ENST00000534106 FAM205CA6NFA0 338 aa6.79□□□□□ -1.32
CHMP4A-208ENST00000534106 RIOK3O14730 519 aaKnown RBP6.79□□□□□ -1.32
CHMP4A-208ENST00000534106 VGFO15240 615 aaPredicted RBP6.78□□□□□ -1.32
CHMP4A-208ENST00000534106 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.77□□□□□ -1.33
CHMP4A-208ENST00000534106 ZFP91Q96JP5 570 aaPredicted RBP6.77□□□□□ -1.33
CHMP4A-208ENST00000534106 SOX12O15370 315 aa6.76□□□□□ -1.33
CHMP4A-208ENST00000534106 DCAF8L2P0C7V8 631 aa6.76□□□□□ -1.33
CHMP4A-208ENST00000534106 HS3ST6Q96QI5 342 aa6.76□□□□□ -1.33
CHMP4A-208ENST00000534106 DNAJC5Q9H3Z4 198 aa6.76□□□□□ -1.33
CHMP4A-208ENST00000534106 TAOK2Q9UL54 1235 aa6.76□□□□□ -1.33
CHMP4A-208ENST00000534106 DOK7Q18PE1 504 aa6.75□□□□□ -1.33
CHMP4A-208ENST00000534106 RIMBP2O15034 1052 aa6.74□□□□□ -1.33
CHMP4A-208ENST00000534106 SPNS2Q8IVW8 549 aa6.74□□□□□ -1.33
CHMP4A-208ENST00000534106 CCDC180Q9P1Z9 1646 aa6.73□□□□□ -1.33
CHMP4A-208ENST00000534106 MMRN1Q13201 1228 aa6.73□□□□□ -1.33
CHMP4A-208ENST00000534106 RNF25Q96BH1 459 aaPredicted RBP6.73□□□□□ -1.33
CHMP4A-208ENST00000534106 PHF8Q9UPP1 1060 aa6.73□□□□□ -1.33
CHMP4A-208ENST00000534106 MICALL2Q8IY33 904 aa6.72□□□□□ -1.33
CHMP4A-208ENST00000534106 ERBB3P21860 1342 aa6.72□□□□□ -1.33
CHMP4A-208ENST00000534106 HOXB3P14651 431 aaPredicted RBP6.71□□□□□ -1.34
CHMP4A-208ENST00000534106 STK24Q9Y6E0 443 aa6.71□□□□□ -1.34
CHMP4A-208ENST00000534106 ECM2O94769 699 aaPredicted RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms