RNA–Protein interactions for RNA: ENST00000533626.5

EIF3F-208, Transcript of eukaryotic translation initiation factor 3 subunit F, human

APPRIS P1 TSL 2 BASIC

Gene EIF3F, Length 7,540 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EIF3F-208	ENST00000533626	PTMA	P06454	111 aa	Known RBP	12.12	□□□□□ -0.47
EIF3F-208	ENST00000533626	ZRSR1	Q15695	479 aa	Known RBP	12.11	□□□□□ -0.47
EIF3F-208	ENST00000533626	HAP1	P54257	671 aa	Predicted RBP	12.1	□□□□□ -0.47
EIF3F-208	ENST00000533626	PLCB2	Q00722	1185 aa		12.09	□□□□□ -0.47
EIF3F-208	ENST00000533626	TONSL	Q96HA7	1378 aa		12.09	□□□□□ -0.47
EIF3F-208	ENST00000533626	NPHP1	O15259	732 aa		12.08	□□□□□ -0.48
EIF3F-208	ENST00000533626	CLSTN1	O94985	981 aa		12.08	□□□□□ -0.48
EIF3F-208	ENST00000533626	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.08	□□□□□ -0.48
EIF3F-208	ENST00000533626	CHIC2	Q9UKJ5	165 aa		12.08	□□□□□ -0.48
EIF3F-208	ENST00000533626	RTN4	Q9NQC3	1192 aa	Known RBP	12.06	□□□□□ -0.48
EIF3F-208	ENST00000533626	NPM1	P06748	294 aa	Known RBP eCLIP	12.04	□□□□□ -0.48
EIF3F-208	ENST00000533626	PPM1G	O15355	546 aa	Predicted RBP	12.04	□□□□□ -0.48
EIF3F-208	ENST00000533626	NAP1L2	Q9ULW6	460 aa	Predicted RBP	12.02	□□□□□ -0.48
EIF3F-208	ENST00000533626	LAS1L	Q9Y4W2	734 aa	Known RBP	12.02	□□□□□ -0.49
EIF3F-208	ENST00000533626	MRS2	Q9HD23	443 aa		12.01	□□□□□ -0.49
EIF3F-208	ENST00000533626	NAP1L5	Q96NT1	182 aa	Predicted RBP	12.01	□□□□□ -0.49
EIF3F-208	ENST00000533626	GOLGA6L22	H0YM25	854 aa		12	□□□□□ -0.49
EIF3F-208	ENST00000533626	BECN1	Q14457	450 aa		12	□□□□□ -0.49
EIF3F-208	ENST00000533626	LMOD2	Q6P5Q4	547 aa		11.98	□□□□□ -0.49
EIF3F-208	ENST00000533626	PPP1R15A	O75807	674 aa	Predicted RBP	11.96	□□□□□ -0.49
EIF3F-208	ENST00000533626	CASC1	Q6TDU7	716 aa		11.94	□□□□□ -0.5
EIF3F-208	ENST00000533626	PRM3	Q9NNZ6	103 aa		11.94	□□□□□ -0.5
EIF3F-208	ENST00000533626	ISY1	Q9ULR0	285 aa	Known RBP	11.94	□□□□□ -0.5
EIF3F-208	ENST00000533626	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.93	□□□□□ -0.5
EIF3F-208	ENST00000533626	NEUROD2	Q15784	382 aa		11.93	□□□□□ -0.5
EIF3F-208	ENST00000533626	FGD1	P98174	961 aa		11.92	□□□□□ -0.5
EIF3F-208	ENST00000533626	DDRGK1	Q96HY6	314 aa		11.92	□□□□□ -0.5
EIF3F-208	ENST00000533626	FTSJ3	Q8IY81	847 aa	Known RBP	11.91	□□□□□ -0.5
EIF3F-208	ENST00000533626	ABCC9	O60706	1549 aa		11.91	□□□□□ -0.5
EIF3F-208	ENST00000533626	GOLGA2	Q08379	1002 aa		11.91	□□□□□ -0.5
EIF3F-208	ENST00000533626	ERICH6B	Q5W0A0	696 aa		11.9	□□□□□ -0.5
EIF3F-208	ENST00000533626	OS9	Q13438	667 aa	Predicted RBP	11.89	□□□□□ -0.51
EIF3F-208	ENST00000533626	PDE4C	Q08493	712 aa		11.89	□□□□□ -0.51
EIF3F-208	ENST00000533626	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.89	□□□□□ -0.51
EIF3F-208	ENST00000533626	ARID3A	Q99856	593 aa		11.88	□□□□□ -0.51
EIF3F-208	ENST00000533626	RGL3	Q3MIN7	710 aa		11.88	□□□□□ -0.51
EIF3F-208	ENST00000533626	KCNJ4	P48050	445 aa		11.87	□□□□□ -0.51
EIF3F-208	ENST00000533626	SPRYD3	Q8NCJ5	442 aa		11.86	□□□□□ -0.51
EIF3F-208	ENST00000533626	HSP90AB1	P08238	724 aa	Known RBP	11.85	□□□□□ -0.51
EIF3F-208	ENST00000533626	GOLGA6L6	A8MZA4	724 aa		11.85	□□□□□ -0.51
EIF3F-208	ENST00000533626	RGS3	P49796	1198 aa		11.85	□□□□□ -0.51
EIF3F-208	ENST00000533626	DRC7	Q8IY82	874 aa		11.84	□□□□□ -0.51
EIF3F-208	ENST00000533626	KCNH8	Q96L42	1107 aa		11.84	□□□□□ -0.51
EIF3F-208	ENST00000533626	FRAT1	Q92837	279 aa	Predicted RBP	11.83	□□□□□ -0.52
EIF3F-208	ENST00000533626	ANP32E	Q9BTT0	268 aa		11.83	□□□□□ -0.52
EIF3F-208	ENST00000533626	SOX12	O15370	315 aa		11.82	□□□□□ -0.52
EIF3F-208	ENST00000533626	TSPY4	P0CV99	314 aa		11.81	□□□□□ -0.52
EIF3F-208	ENST00000533626	TSPY10	P0CW01	314 aa		11.81	□□□□□ -0.52
EIF3F-208	ENST00000533626	MIER1	Q8N108	512 aa		11.8	□□□□□ -0.52
EIF3F-208	ENST00000533626	RRP7BP	Q9NSQ0	103 aa		11.79	□□□□□ -0.52
EIF3F-208	ENST00000533626	GOLGA6L4	A6NEF3	574 aa		11.79	□□□□□ -0.52
EIF3F-208	ENST00000533626	NOC3L	Q8WTT2	800 aa	Known RBP	11.79	□□□□□ -0.52
EIF3F-208	ENST00000533626	FBXO3	Q9UK99	471 aa		11.78	□□□□□ -0.52
EIF3F-208	ENST00000533626	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.78	□□□□□ -0.52
EIF3F-208	ENST00000533626	CSRNP3	Q8WYN3	585 aa		11.77	□□□□□ -0.52
EIF3F-208	ENST00000533626	CFAP53	Q96M91	514 aa		11.77	□□□□□ -0.52
EIF3F-208	ENST00000533626	CHAF1A	Q13111	956 aa	Predicted RBP	11.75	□□□□□ -0.53
EIF3F-208	ENST00000533626	GNL2	Q13823	731 aa	Known RBP	11.75	□□□□□ -0.53
EIF3F-208	ENST00000533626	PNN	Q9H307	717 aa	Known RBP	11.75	□□□□□ -0.53
EIF3F-208	ENST00000533626	MAPK8IP3	Q9UPT6	1336 aa		11.75	□□□□□ -0.53
EIF3F-208	ENST00000533626	NRDC	O43847	1150 aa		11.75	□□□□□ -0.53
EIF3F-208	ENST00000533626	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.75	□□□□□ -0.53
EIF3F-208	ENST00000533626	U2SURP	O15042	1029 aa	Known RBP	11.74	□□□□□ -0.53
EIF3F-208	ENST00000533626	KNSTRN	Q9Y448	316 aa		11.74	□□□□□ -0.53
EIF3F-208	ENST00000533626	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
EIF3F-208	ENST00000533626	APBB1	O00213	710 aa		11.73	□□□□□ -0.53
EIF3F-208	ENST00000533626	MSN	P26038	577 aa	Known RBP	11.73	□□□□□ -0.53
EIF3F-208	ENST00000533626	CC2D1B	Q5T0F9	858 aa	Known RBP	11.72	□□□□□ -0.53
EIF3F-208	ENST00000533626	KIAA2012	Q0VF49	1180 aa		11.72	□□□□□ -0.53
EIF3F-208	ENST00000533626	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.71	□□□□□ -0.53
EIF3F-208	ENST00000533626	CALR	P27797	417 aa	Known RBP	11.7	□□□□□ -0.54
EIF3F-208	ENST00000533626	POGK	Q9P215	609 aa		11.7	□□□□□ -0.54
EIF3F-208	ENST00000533626		A0A0U1RQG5	324 aa	Predicted RBP	11.69	□□□□□ -0.54
EIF3F-208	ENST00000533626	CREBRF	Q8IUR6	639 aa		11.69	□□□□□ -0.54
EIF3F-208	ENST00000533626	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.67	□□□□□ -0.54
EIF3F-208	ENST00000533626	WWC1	Q8IX03	1113 aa		11.67	□□□□□ -0.54
EIF3F-208	ENST00000533626	MTUS2	Q5JR59	1369 aa		11.67	□□□□□ -0.54
EIF3F-208	ENST00000533626	HSCB	Q8IWL3	235 aa		11.67	□□□□□ -0.54
EIF3F-208	ENST00000533626	TNNT3	P45378	269 aa	Predicted RBP	11.66	□□□□□ -0.54
EIF3F-208	ENST00000533626	GZF1	Q9H116	711 aa	Predicted RBP	11.65	□□□□□ -0.54
EIF3F-208	ENST00000533626	NOP58	Q9Y2X3	529 aa	Known RBP	11.65	□□□□□ -0.54
EIF3F-208	ENST00000533626	B4GALNT3	Q6L9W6	998 aa		11.64	□□□□□ -0.55
EIF3F-208	ENST00000533626	NUDC	Q9Y266	331 aa		11.64	□□□□□ -0.55
EIF3F-208	ENST00000533626	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
EIF3F-208	ENST00000533626	HSP90B1	P14625	803 aa	Known RBP	11.63	□□□□□ -0.55
EIF3F-208	ENST00000533626	L1TD1	Q5T7N2	865 aa	Known RBP	11.63	□□□□□ -0.55
EIF3F-208	ENST00000533626	CARD11	Q9BXL7	1154 aa		11.62	□□□□□ -0.55
EIF3F-208	ENST00000533626	MLEC	Q14165	292 aa		11.62	□□□□□ -0.55
EIF3F-208	ENST00000533626	MCC	P23508	829 aa		11.61	□□□□□ -0.55
EIF3F-208	ENST00000533626	TRH	P20396	242 aa	Predicted RBP	11.59	□□□□□ -0.55
EIF3F-208	ENST00000533626	VPS53	Q5VIR6	699 aa		11.59	□□□□□ -0.55
EIF3F-208	ENST00000533626	CHMP3	Q9Y3E7	222 aa		11.59	□□□□□ -0.55
EIF3F-208	ENST00000533626	PATL2	C9JE40	543 aa	Known RBP	11.59	□□□□□ -0.55
EIF3F-208	ENST00000533626	PAK3	O75914	559 aa	Predicted RBP	11.58	□□□□□ -0.55
EIF3F-208	ENST00000533626	KRI1	Q8N9T8	703 aa	Known RBP	11.58	□□□□□ -0.56
EIF3F-208	ENST00000533626	CCDC9	Q9Y3X0	531 aa	Known RBP	11.58	□□□□□ -0.56
EIF3F-208	ENST00000533626	KIAA1211	Q6ZU35	1233 aa		11.57	□□□□□ -0.56
EIF3F-208	ENST00000533626		G3V3G9	751 aa		11.57	□□□□□ -0.56
EIF3F-208	ENST00000533626	DCAF8	Q5TAQ9	597 aa		11.57	□□□□□ -0.56
EIF3F-208	ENST00000533626	CDCA8	Q53HL2	280 aa		11.56	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms