RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 POTEJP0CG39 1038 aa7.83□□□□□ -1.16
CD44-234ENST00000531873 SLC39A7Q92504 469 aa7.83□□□□□ -1.16
CD44-234ENST00000531873 METRNQ9UJH8 293 aa7.83□□□□□ -1.16
CD44-234ENST00000531873 ATMINO43313 823 aaPredicted RBP7.82□□□□□ -1.16
CD44-234ENST00000531873 FKBP8Q14318 412 aa7.82□□□□□ -1.16
CD44-234ENST00000531873 MAMSTRQ6ZN01 415 aa7.82□□□□□ -1.16
CD44-234ENST00000531873 LCE2DQ5TA82 110 aaPredicted RBP7.79□□□□□ -1.16
CD44-234ENST00000531873 MS4A3Q96HJ5 214 aa7.79□□□□□ -1.16
CD44-234ENST00000531873 RTN4Q9NQC3 1192 aaKnown RBP7.79□□□□□ -1.16
CD44-234ENST00000531873 SPDYE4A6NLX3 237 aa7.78□□□□□ -1.16
CD44-234ENST00000531873 AMER1Q5JTC6 1135 aaPredicted RBP7.74□□□□□ -1.17
CD44-234ENST00000531873 SCUBE2Q9NQ36 999 aa7.72□□□□□ -1.17
CD44-234ENST00000531873 ATN1P54259 1190 aaPredicted RBP7.71□□□□□ -1.18
CD44-234ENST00000531873 FAM163AQ96GL9 167 aaPredicted RBP7.7□□□□□ -1.18
CD44-234ENST00000531873 CCDC61Q9Y6R9 512 aa7.69□□□□□ -1.18
CD44-234ENST00000531873 POTEFA5A3E0 1075 aa7.68□□□□□ -1.18
CD44-234ENST00000531873 KIF12Q96FN5 646 aa7.67□□□□□ -1.18
CD44-234ENST00000531873 TSPYL2Q9H2G4 693 aaPredicted RBP7.64□□□□□ -1.19
CD44-234ENST00000531873 BMP2KQ9NSY1 1161 aaPredicted RBP7.64□□□□□ -1.19
CD44-234ENST00000531873 TIE1P35590 1138 aa7.63□□□□□ -1.19
CD44-234ENST00000531873 PROM2Q8N271 834 aa7.62□□□□□ -1.19
CD44-234ENST00000531873 SLC24A1O60721 1099 aa7.59□□□□□ -1.19
CD44-234ENST00000531873 TRPC6Q9Y210 931 aa7.59□□□□□ -1.19
CD44-234ENST00000531873 MAP3K13O43283 966 aa7.58□□□□□ -1.2
CD44-234ENST00000531873 CDAN1Q8IWY9 1227 aa7.58□□□□□ -1.2
CD44-234ENST00000531873 COLQQ9Y215 455 aaPredicted RBP7.58□□□□□ -1.2
CD44-234ENST00000531873 IER5LQ5T953 404 aa7.56□□□□□ -1.2
CD44-234ENST00000531873 TTLL13PA6NNM8 815 aa7.55□□□□□ -1.2
CD44-234ENST00000531873 SEC24BO95487 1268 aa7.54□□□□□ -1.2
CD44-234ENST00000531873 SGIP1Q9BQI5 828 aa7.53□□□□□ -1.2
CD44-234ENST00000531873 RASEFQ8IZ41 740 aa7.51□□□□□ -1.21
CD44-234ENST00000531873 ST18O60284 1047 aa7.5□□□□□ -1.21
CD44-234ENST00000531873 TRIM35Q9UPQ4 493 aa7.49□□□□□ -1.21
CD44-234ENST00000531873 PLEKHG5O94827 1062 aa7.47□□□□□ -1.21
CD44-234ENST00000531873 SLAIN1Q8ND83 568 aa7.47□□□□□ -1.21
CD44-234ENST00000531873 MIER1Q8N108 512 aa7.44□□□□□ -1.22
CD44-234ENST00000531873 PCDHB13Q9Y5F0 798 aa7.44□□□□□ -1.22
CD44-234ENST00000531873 MMRN1Q13201 1228 aa7.43□□□□□ -1.22
CD44-234ENST00000531873 TMEM121BQ9BXQ6 578 aaPredicted RBP7.43□□□□□ -1.22
CD44-234ENST00000531873 SPNS2Q8IVW8 549 aa7.42□□□□□ -1.22
CD44-234ENST00000531873 PLCG2P16885 1265 aa7.4□□□□□ -1.22
CD44-234ENST00000531873 IRX5P78411 483 aaPredicted RBP7.4□□□□□ -1.22
CD44-234ENST00000531873 IFNL1Q8IU54 200 aa7.4□□□□□ -1.22
CD44-234ENST00000531873 NUBP1P53384 320 aa7.39□□□□□ -1.23
CD44-234ENST00000531873 TMEM106CQ9BVX2 250 aa7.38□□□□□ -1.23
CD44-234ENST00000531873 FBXO3Q9UK99 471 aa7.38□□□□□ -1.23
CD44-234ENST00000531873 SNPHO15079 494 aa7.37□□□□□ -1.23
CD44-234ENST00000531873 ZBTB47Q9UFB7 747 aaPredicted RBP7.36□□□□□ -1.23
CD44-234ENST00000531873 OCEL1Q9H607 264 aa7.35□□□□□ -1.23
CD44-234ENST00000531873 VASPP50552 380 aaPredicted RBP7.34□□□□□ -1.23
CD44-234ENST00000531873 PLCD3Q8N3E9 789 aa7.33□□□□□ -1.24
CD44-234ENST00000531873 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.32□□□□□ -1.24
CD44-234ENST00000531873 FAM212AQ96EL1 285 aa7.31□□□□□ -1.24
CD44-234ENST00000531873 IFNLR1Q8IU57 520 aaPredicted RBP7.29□□□□□ -1.24
CD44-234ENST00000531873 MARVELD3Q96A59 401 aa7.29□□□□□ -1.24
CD44-234ENST00000531873 KRTAP3-3Q9BYR6 98 aa7.24□□□□□ -1.25
CD44-234ENST00000531873 KRTAP3-2Q9BYR7 98 aa7.24□□□□□ -1.25
CD44-234ENST00000531873 PDCD7Q8N8D1 485 aaKnown RBP7.23□□□□□ -1.25
CD44-234ENST00000531873 EMP3P54852 163 aa7.22□□□□□ -1.25
CD44-234ENST00000531873 POTEB3A0JP26 581 aa7.21□□□□□ -1.26
CD44-234ENST00000531873 POTEBQ6S5H4 581 aa7.21□□□□□ -1.26
CD44-234ENST00000531873 L3MBTL3Q96JM7 780 aaPredicted RBP7.2□□□□□ -1.26
CD44-234ENST00000531873 HS3ST6Q96QI5 342 aa7.2□□□□□ -1.26
CD44-234ENST00000531873 PYGBP11216 843 aa7.19□□□□□ -1.26
CD44-234ENST00000531873 PKD2Q13563 968 aa7.19□□□□□ -1.26
CD44-234ENST00000531873 C3orf67Q6ZVT6 689 aa7.19□□□□□ -1.26
CD44-234ENST00000531873 PCDHB8Q9UN66 801 aa7.19□□□□□ -1.26
CD44-234ENST00000531873 DCAF8Q5TAQ9 597 aa7.18□□□□□ -1.26
CD44-234ENST00000531873 PLCB2Q00722 1185 aa7.17□□□□□ -1.26
CD44-234ENST00000531873 FAM205CA6NFA0 338 aa7.16□□□□□ -1.26
CD44-234ENST00000531873 ILDR1Q86SU0 546 aaPredicted RBP7.15□□□□□ -1.26
CD44-234ENST00000531873 MKRN3Q13064 507 aaKnown RBP7.14□□□□□ -1.27
CD44-234ENST00000531873 ZNF467Q7Z7K2 595 aaPredicted RBP7.14□□□□□ -1.27
CD44-234ENST00000531873 CHRM1P11229 460 aaPredicted RBP7.11□□□□□ -1.27
CD44-234ENST00000531873 GOLGA2Q08379 1002 aa7.11□□□□□ -1.27
CD44-234ENST00000531873 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.11□□□□□ -1.27
CD44-234ENST00000531873 HOXB3P14651 431 aaPredicted RBP7.1□□□□□ -1.27
CD44-234ENST00000531873 SPOCK2Q92563 424 aa7.09□□□□□ -1.27
CD44-234ENST00000531873 DCAF8L2P0C7V8 631 aa7.08□□□□□ -1.28
CD44-234ENST00000531873 HOXB1P14653 301 aaPredicted RBP7.08□□□□□ -1.28
CD44-234ENST00000531873 GSE1Q14687 1217 aa7.08□□□□□ -1.28
CD44-234ENST00000531873 PSEN1P49768 467 aa7.06□□□□□ -1.28
CD44-234ENST00000531873 KLHL34Q8N239 644 aa7.05□□□□□ -1.28
CD44-234ENST00000531873 DPY19L2Q6NUT2 758 aa7.04□□□□□ -1.28
CD44-234ENST00000531873 RNF166Q96A37 237 aaPredicted RBP7.04□□□□□ -1.28
CD44-234ENST00000531873 HAP1P54257 671 aaPredicted RBP7.03□□□□□ -1.28
CD44-234ENST00000531873 BOLA1Q9Y3E2 137 aa7.03□□□□□ -1.28
CD44-234ENST00000531873 ECM2O94769 699 aaPredicted RBP7.02□□□□□ -1.29
CD44-234ENST00000531873 DOK7Q18PE1 504 aa7.02□□□□□ -1.29
CD44-234ENST00000531873 ERBB3P21860 1342 aa7.01□□□□□ -1.29
CD44-234ENST00000531873 PDAP1Q13442 181 aaKnown RBP7.01□□□□□ -1.29
CD44-234ENST00000531873 ZNF710Q8N1W2 664 aa7.01□□□□□ -1.29
CD44-234ENST00000531873 MYT1LQ9UL68 1186 aa7□□□□□ -1.29
CD44-234ENST00000531873 G3V3G9 751 aa6.99□□□□□ -1.29
CD44-234ENST00000531873 RGL2O15211 777 aa6.99□□□□□ -1.29
CD44-234ENST00000531873 PTGER2P43116 358 aa6.97□□□□□ -1.29
CD44-234ENST00000531873 ZSWIM6Q9HCJ5 1215 aa6.97□□□□□ -1.29
CD44-234ENST00000531873 RIMBP2O15034 1052 aa6.96□□□□□ -1.3
CD44-234ENST00000531873 VARS2Q5ST30 1063 aaKnown RBP6.96□□□□□ -1.3
CD44-234ENST00000531873 ZNF687Q8N1G0 1237 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 253.4 ms