RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 ZNF579Q8NAF0 562 aaKnown RBP19.95■□□□□ 0.78
CSDE1-213ENST00000530784 GSE1Q14687 1217 aa19.93■□□□□ 0.78
CSDE1-213ENST00000530784 SP7Q8TDD2 431 aaPredicted RBP19.93■□□□□ 0.78
CSDE1-213ENST00000530784 PHF12Q96QT6 1004 aa19.93■□□□□ 0.78
CSDE1-213ENST00000530784 CIZ1Q9ULV3 898 aaPredicted RBP19.93■□□□□ 0.78
CSDE1-213ENST00000530784 PYGBP11216 843 aa19.8■□□□□ 0.76
CSDE1-213ENST00000530784 GABBR2O75899 941 aa19.79■□□□□ 0.76
CSDE1-213ENST00000530784 KIF12Q96FN5 646 aa19.79■□□□□ 0.76
CSDE1-213ENST00000530784 MAP3K13O43283 966 aa19.74■□□□□ 0.75
CSDE1-213ENST00000530784 CLCN6P51797 869 aa19.72■□□□□ 0.75
CSDE1-213ENST00000530784 PKD2Q13563 968 aa19.69■□□□□ 0.74
CSDE1-213ENST00000530784 GALR2O43603 387 aaPredicted RBP19.68■□□□□ 0.74
CSDE1-213ENST00000530784 CHRM1P11229 460 aaPredicted RBP19.68■□□□□ 0.74
CSDE1-213ENST00000530784 MS4A3Q96HJ5 214 aa19.67■□□□□ 0.74
CSDE1-213ENST00000530784 TRIM41Q8WV44 630 aa19.65■□□□□ 0.74
CSDE1-213ENST00000530784 PCDHB13Q9Y5F0 798 aa19.65■□□□□ 0.74
CSDE1-213ENST00000530784 SGIP1Q9BQI5 828 aa19.61■□□□□ 0.73
CSDE1-213ENST00000530784 ECM2O94769 699 aaPredicted RBP19.58■□□□□ 0.72
CSDE1-213ENST00000530784 IFNL1Q8IU54 200 aa19.58■□□□□ 0.72
CSDE1-213ENST00000530784 PCDHB8Q9UN66 801 aa19.55■□□□□ 0.72
CSDE1-213ENST00000530784 TRPC6Q9Y210 931 aa19.51■□□□□ 0.71
CSDE1-213ENST00000530784 AMER1Q5JTC6 1135 aaPredicted RBP19.48■□□□□ 0.71
CSDE1-213ENST00000530784 ZNF467Q7Z7K2 595 aaPredicted RBP19.48■□□□□ 0.71
CSDE1-213ENST00000530784 RTN4Q9NQC3 1192 aaKnown RBP19.47■□□□□ 0.71
CSDE1-213ENST00000530784 RNF25Q96BH1 459 aaPredicted RBP19.46■□□□□ 0.71
CSDE1-213ENST00000530784 DCBLD2Q96PD2 775 aa19.43■□□□□ 0.7
CSDE1-213ENST00000530784 RGL2O15211 777 aa19.42■□□□□ 0.7
CSDE1-213ENST00000530784 RIOK3O14730 519 aaKnown RBP19.39■□□□□ 0.69
CSDE1-213ENST00000530784 POTEIP0CG38 1075 aa19.39■□□□□ 0.69
CSDE1-213ENST00000530784 TIE1P35590 1138 aa19.36■□□□□ 0.69
CSDE1-213ENST00000530784 BMP2KQ9NSY1 1161 aaPredicted RBP19.36■□□□□ 0.69
CSDE1-213ENST00000530784 PSEN1P49768 467 aa19.32■□□□□ 0.68
CSDE1-213ENST00000530784 TTLL13PA6NNM8 815 aa19.31■□□□□ 0.68
CSDE1-213ENST00000530784 ATMINO43313 823 aaPredicted RBP19.31■□□□□ 0.68
CSDE1-213ENST00000530784 PDAP1Q13442 181 aaKnown RBP19.31■□□□□ 0.68
CSDE1-213ENST00000530784 ASTLQ6HA08 431 aaPredicted RBP19.31■□□□□ 0.68
CSDE1-213ENST00000530784 TMEM106CQ9BVX2 250 aa19.31■□□□□ 0.68
CSDE1-213ENST00000530784 ATN1P54259 1190 aaPredicted RBP19.27■□□□□ 0.68
CSDE1-213ENST00000530784 VGFO15240 615 aaPredicted RBP19.26■□□□□ 0.67
CSDE1-213ENST00000530784 PELP1Q8IZL8 1130 aaKnown RBP19.24■□□□□ 0.67
CSDE1-213ENST00000530784 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.21■□□□□ 0.67
CSDE1-213ENST00000530784 ZFP91Q96JP5 570 aaPredicted RBP19.21■□□□□ 0.67
CSDE1-213ENST00000530784 TAOK2Q9UL54 1235 aa19.19■□□□□ 0.66
CSDE1-213ENST00000530784 TRIM35Q9UPQ4 493 aa19.18■□□□□ 0.66
CSDE1-213ENST00000530784 DCAF8L2P0C7V8 631 aa19.1■□□□□ 0.65
CSDE1-213ENST00000530784 BCL11BQ9C0K0 894 aaPredicted RBP19.09■□□□□ 0.65
CSDE1-213ENST00000530784 CABP2Q9NPB3 220 aa19.09■□□□□ 0.65
CSDE1-213ENST00000530784 STK25O00506 426 aa19.08■□□□□ 0.64
CSDE1-213ENST00000530784 SLC39A7Q92504 469 aa19.05■□□□□ 0.64
CSDE1-213ENST00000530784 STK24Q9Y6E0 443 aa19.05■□□□□ 0.64
CSDE1-213ENST00000530784 GOLGA2Q08379 1002 aa19.04■□□□□ 0.64
CSDE1-213ENST00000530784 C7P10643 843 aa19.02■□□□□ 0.64
CSDE1-213ENST00000530784 METRNQ9UJH8 293 aa19.02■□□□□ 0.64
CSDE1-213ENST00000530784 CHGAP10645 457 aaKnown RBP19.01■□□□□ 0.63
CSDE1-213ENST00000530784 IER5LQ5T953 404 aa18.99■□□□□ 0.63
CSDE1-213ENST00000530784 MKRN3Q13064 507 aaKnown RBP18.98■□□□□ 0.63
CSDE1-213ENST00000530784 EFCAB3Q8N7B9 438 aa18.98■□□□□ 0.63
CSDE1-213ENST00000530784 HS6ST3Q8IZP7 471 aa18.97■□□□□ 0.63
CSDE1-213ENST00000530784 POTEFA5A3E0 1075 aa18.92■□□□□ 0.62
CSDE1-213ENST00000530784 COLQQ9Y215 455 aaPredicted RBP18.92■□□□□ 0.62
CSDE1-213ENST00000530784 SEC24BO95487 1268 aa18.9■□□□□ 0.62
CSDE1-213ENST00000530784 IRX5P78411 483 aaPredicted RBP18.9■□□□□ 0.62
CSDE1-213ENST00000530784 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.86■□□□□ 0.615e-11■■□□□ 12.9
CSDE1-213ENST00000530784 PLCG2P16885 1265 aa18.84■□□□□ 0.61
CSDE1-213ENST00000530784 OCEL1Q9H607 264 aa18.84■□□□□ 0.61
CSDE1-213ENST00000530784 SOX12O15370 315 aa18.83■□□□□ 0.6
CSDE1-213ENST00000530784 ILDR1Q86SU0 546 aaPredicted RBP18.8■□□□□ 0.6
CSDE1-213ENST00000530784 PHF8Q9UPP1 1060 aa18.8■□□□□ 0.6
CSDE1-213ENST00000530784 POTEB2H3BUK9 544 aa18.79■□□□□ 0.6
CSDE1-213ENST00000530784 PDCD7Q8N8D1 485 aaKnown RBP18.79■□□□□ 0.6
CSDE1-213ENST00000530784 DNAJC5Q9H3Z4 198 aa18.77■□□□□ 0.6
CSDE1-213ENST00000530784 MFRPQ9BY79 579 aa18.76■□□□□ 0.59
CSDE1-213ENST00000530784 NKX1-1Q15270 411 aaPredicted RBP18.75■□□□□ 0.59
CSDE1-213ENST00000530784 NLRP6P59044 892 aa18.72■□□□□ 0.59
CSDE1-213ENST00000530784 LHX8Q68G74 356 aa18.72■□□□□ 0.59
CSDE1-213ENST00000530784 DPY19L2Q6NUT2 758 aa18.72■□□□□ 0.59
CSDE1-213ENST00000530784 FBXO22Q8NEZ5 403 aa18.71■□□□□ 0.59
CSDE1-213ENST00000530784 MS4A4AQ96JQ5 239 aa18.7■□□□□ 0.58
CSDE1-213ENST00000530784 POTEJP0CG39 1038 aa18.68■□□□□ 0.58
CSDE1-213ENST00000530784 BBXQ8WY36 941 aaPredicted RBP18.64■□□□□ 0.57
CSDE1-213ENST00000530784 L3MBTL3Q96JM7 780 aaPredicted RBP18.58■□□□□ 0.56
CSDE1-213ENST00000530784 GTPBP6O43824 516 aaPredicted RBP18.54■□□□□ 0.56
CSDE1-213ENST00000530784 BOLA1Q9Y3E2 137 aa18.53■□□□□ 0.56
CSDE1-213ENST00000530784 PPP1R37O75864 691 aa18.52■□□□□ 0.56
CSDE1-213ENST00000530784 OTUD5Q96G74 571 aa18.5■□□□□ 0.55
CSDE1-213ENST00000530784 RYDENQ9NUL5 291 aaKnown RBP18.5■□□□□ 0.55
CSDE1-213ENST00000530784 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.5■□□□□ 0.55
CSDE1-213ENST00000530784 MAMSTRQ6ZN01 415 aa18.49■□□□□ 0.55
CSDE1-213ENST00000530784 G3V3G9 751 aa18.48■□□□□ 0.55
CSDE1-213ENST00000530784 MICALL2Q8IY33 904 aa18.46■□□□□ 0.55
CSDE1-213ENST00000530784 TMEM121BQ9BXQ6 578 aaPredicted RBP18.46■□□□□ 0.55
CSDE1-213ENST00000530784 SCUBE2Q9NQ36 999 aa18.46■□□□□ 0.55
CSDE1-213ENST00000530784 C3orf67Q6ZVT6 689 aa18.4■□□□□ 0.54
CSDE1-213ENST00000530784 SPRYD3Q8NCJ5 442 aa18.4■□□□□ 0.54
CSDE1-213ENST00000530784 PAXIP1Q6ZW49 1069 aaPredicted RBP18.39■□□□□ 0.53
CSDE1-213ENST00000530784 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.39■□□□□ 0.53
CSDE1-213ENST00000530784 CFAP44Q96MT7 982 aa18.37■□□□□ 0.53
CSDE1-213ENST00000530784 SLAIN1Q8ND83 568 aa18.31■□□□□ 0.52
CSDE1-213ENST00000530784 TMEM92Q6UXU6 159 aa18.26■□□□□ 0.51
CSDE1-213ENST00000530784 PLCB2Q00722 1185 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms