RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 CC2D2AQ9P2K1 1620 aa9.84□□□□□ -0.83
HMGB1P23-201ENST00000518743 TAOK2Q9UL54 1235 aa9.83□□□□□ -0.84
HMGB1P23-201ENST00000518743 SPDYE1Q8NFV5 336 aaPredicted RBP9.82□□□□□ -0.84
HMGB1P23-201ENST00000518743 PIP4P2Q8N4L2 257 aa9.8□□□□□ -0.84
HMGB1P23-201ENST00000518743 CIZ1Q9ULV3 898 aaPredicted RBP9.8□□□□□ -0.84
HMGB1P23-201ENST00000518743 UNC13AQ9UPW8 1703 aa9.79□□□□□ -0.84
HMGB1P23-201ENST00000518743 RGL2O15211 777 aa9.79□□□□□ -0.84
HMGB1P23-201ENST00000518743 NPM1P06748 294 aaKnown RBP eCLIP9.78□□□□□ -0.84
HMGB1P23-201ENST00000518743 CUX2O14529 1486 aa9.78□□□□□ -0.84
HMGB1P23-201ENST00000518743 GSE1Q14687 1217 aa9.75□□□□□ -0.85
HMGB1P23-201ENST00000518743 CHGAP10645 457 aaKnown RBP9.74□□□□□ -0.85
HMGB1P23-201ENST00000518743 FXR2P51116 673 aaKnown RBP eCLIP9.74□□□□□ -0.85
HMGB1P23-201ENST00000518743 KDM2AQ9Y2K7 1162 aa9.74□□□□□ -0.85
HMGB1P23-201ENST00000518743 PRR29P0C7W0 189 aa9.69□□□□□ -0.86
HMGB1P23-201ENST00000518743 HS6ST3Q8IZP7 471 aa9.69□□□□□ -0.86
HMGB1P23-201ENST00000518743 NACADO15069 1562 aa9.67□□□□□ -0.86
HMGB1P23-201ENST00000518743 BICRAQ9NZM4 1560 aa9.67□□□□□ -0.86
HMGB1P23-201ENST00000518743 PRKAR2AP13861 404 aaKnown RBP9.67□□□□□ -0.86
HMGB1P23-201ENST00000518743 NBR1Q14596 966 aa9.65□□□□□ -0.86
HMGB1P23-201ENST00000518743 TPRNQ4KMQ1 711 aa9.65□□□□□ -0.86
HMGB1P23-201ENST00000518743 CHADLQ6NUI6 762 aa9.65□□□□□ -0.86
HMGB1P23-201ENST00000518743 PRKCSHP14314 528 aaPredicted RBP9.64□□□□□ -0.87
HMGB1P23-201ENST00000518743 TSHZ2Q9NRE2 1034 aa9.64□□□□□ -0.87
HMGB1P23-201ENST00000518743 ERCC6Q03468 1493 aa9.61□□□□□ -0.87
HMGB1P23-201ENST00000518743 RYDENQ9NUL5 291 aaKnown RBP9.61□□□□□ -0.87
HMGB1P23-201ENST00000518743 RIOK3O14730 519 aaKnown RBP9.58□□□□□ -0.88
HMGB1P23-201ENST00000518743 FAM212AQ96EL1 285 aa9.58□□□□□ -0.88
HMGB1P23-201ENST00000518743 EIF4G1Q04637 1599 aaKnown RBP9.57□□□□□ -0.88
HMGB1P23-201ENST00000518743 HAX1O00165 279 aa9.56□□□□□ -0.88
HMGB1P23-201ENST00000518743 DCAF8Q5TAQ9 597 aa9.56□□□□□ -0.88
HMGB1P23-201ENST00000518743 VGFO15240 615 aaPredicted RBP9.54□□□□□ -0.88
HMGB1P23-201ENST00000518743 NUBP1P53384 320 aa9.53□□□□□ -0.88
HMGB1P23-201ENST00000518743 CREBZFQ9NS37 354 aa9.52□□□□□ -0.89
HMGB1P23-201ENST00000518743 CHRM1P11229 460 aaPredicted RBP9.51□□□□□ -0.89
HMGB1P23-201ENST00000518743 EVX2Q03828 476 aa9.5□□□□□ -0.89
HMGB1P23-201ENST00000518743 ILDR1Q86SU0 546 aaPredicted RBP9.49□□□□□ -0.89
HMGB1P23-201ENST00000518743 RNF25Q96BH1 459 aaPredicted RBP9.49□□□□□ -0.89
HMGB1P23-201ENST00000518743 SGIP1Q9BQI5 828 aa9.49□□□□□ -0.89
HMGB1P23-201ENST00000518743 FARP1Q9Y4F1 1045 aaPredicted RBP9.49□□□□□ -0.89
HMGB1P23-201ENST00000518743 STK25O00506 426 aa9.48□□□□□ -0.89
HMGB1P23-201ENST00000518743 GTPBP6O43824 516 aaPredicted RBP9.44□□□□□ -0.9
HMGB1P23-201ENST00000518743 SHROOM4Q9ULL8 1493 aa9.44□□□□□ -0.9
HMGB1P23-201ENST00000518743 C19orf67A6NJJ6 358 aa9.43□□□□□ -0.9
HMGB1P23-201ENST00000518743 P3H3Q8IVL6 736 aa9.42□□□□□ -0.9
HMGB1P23-201ENST00000518743 NKX1-1Q15270 411 aaPredicted RBP9.41□□□□□ -0.9
HMGB1P23-201ENST00000518743 SP7Q8TDD2 431 aaPredicted RBP9.41□□□□□ -0.9
HMGB1P23-201ENST00000518743 ERICH6Q7L0X2 663 aa9.39□□□□□ -0.91
HMGB1P23-201ENST00000518743 CD44P16070 742 aaKnown RBP9.38□□□□□ -0.91
HMGB1P23-201ENST00000518743 MNX1P50219 401 aaPredicted RBP9.38□□□□□ -0.91
HMGB1P23-201ENST00000518743 STK24Q9Y6E0 443 aa9.38□□□□□ -0.91
HMGB1P23-201ENST00000518743 BCL11BQ9C0K0 894 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P23-201ENST00000518743 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P23-201ENST00000518743 ZFP91Q96JP5 570 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P23-201ENST00000518743 ZNF467Q7Z7K2 595 aaPredicted RBP9.33□□□□□ -0.92
HMGB1P23-201ENST00000518743 RASEFQ8IZ41 740 aa9.32□□□□□ -0.92
HMGB1P23-201ENST00000518743 WDR70Q9NW82 654 aa9.31□□□□□ -0.92
HMGB1P23-201ENST00000518743 ZRANB1Q9UGI0 708 aa9.29□□□□□ -0.92
HMGB1P23-201ENST00000518743 TULP1O00294 542 aaPredicted RBP9.28□□□□□ -0.92
HMGB1P23-201ENST00000518743 PYGBP11216 843 aa9.28□□□□□ -0.92
HMGB1P23-201ENST00000518743 GABBR2O75899 941 aa9.24□□□□□ -0.93
HMGB1P23-201ENST00000518743 PDAP1Q13442 181 aaKnown RBP9.24□□□□□ -0.93
HMGB1P23-201ENST00000518743 TSPYL2Q9H2G4 693 aaPredicted RBP9.24□□□□□ -0.93
HMGB1P23-201ENST00000518743 PAK3O75914 559 aaPredicted RBP9.22□□□□□ -0.93
HMGB1P23-201ENST00000518743 PHF12Q96QT6 1004 aa9.22□□□□□ -0.93
HMGB1P23-201ENST00000518743 RIMBP3CA6NJZ7 1639 aa9.21□□□□□ -0.93
HMGB1P23-201ENST00000518743 RIMBP3BA6NNM3 1639 aa9.21□□□□□ -0.93
HMGB1P23-201ENST00000518743 RIMBP3Q9UFD9 1639 aa9.21□□□□□ -0.93
HMGB1P23-201ENST00000518743 THOC2Q8NI27 1593 aaKnown RBP9.2□□□□□ -0.94
HMGB1P23-201ENST00000518743 BAZ1AQ9NRL2 1556 aaPredicted RBP9.2□□□□□ -0.94
HMGB1P23-201ENST00000518743 TMEM132AQ24JP5 1023 aa9.2□□□□□ -0.94
HMGB1P23-201ENST00000518743 ZNF579Q8NAF0 562 aaKnown RBP9.2□□□□□ -0.94
HMGB1P23-201ENST00000518743 SCRIBQ14160 1630 aa9.19□□□□□ -0.94
HMGB1P23-201ENST00000518743 GTF3C3Q9Y5Q9 886 aa9.17□□□□□ -0.94
HMGB1P23-201ENST00000518743 SMARCA2P51531 1590 aa9.16□□□□□ -0.94
HMGB1P23-201ENST00000518743 NESP48681 1621 aa9.15□□□□□ -0.94
HMGB1P23-201ENST00000518743 MYO15BQ96JP2 1530 aa9.15□□□□□ -0.95
HMGB1P23-201ENST00000518743 GALR2O43603 387 aaPredicted RBP9.13□□□□□ -0.95
HMGB1P23-201ENST00000518743 CCDC61Q9Y6R9 512 aa9.13□□□□□ -0.95
HMGB1P23-201ENST00000518743 LMOD2Q6P5Q4 547 aa9.12□□□□□ -0.95
HMGB1P23-201ENST00000518743 KCNV2Q8TDN2 545 aa9.12□□□□□ -0.95
HMGB1P23-201ENST00000518743 ARHGEF1Q92888 912 aaKnown RBP9.12□□□□□ -0.95
HMGB1P23-201ENST00000518743 PSEN1P49768 467 aa9.11□□□□□ -0.95
HMGB1P23-201ENST00000518743 CYB5RLQ6IPT4 315 aa9.11□□□□□ -0.95
HMGB1P23-201ENST00000518743 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.1□□□□□ -0.95
HMGB1P23-201ENST00000518743 SOX12O15370 315 aa9.09□□□□□ -0.95
HMGB1P23-201ENST00000518743 NLRP6P59044 892 aa9.09□□□□□ -0.95
HMGB1P23-201ENST00000518743 MS4A3Q96HJ5 214 aa9.08□□□□□ -0.96
HMGB1P23-201ENST00000518743 POTEIP0CG38 1075 aa9.07□□□□□ -0.96
HMGB1P23-201ENST00000518743 ARHGEF11O15085 1522 aa9.06□□□□□ -0.96
HMGB1P23-201ENST00000518743 CLCN6P51797 869 aa9.06□□□□□ -0.96
HMGB1P23-201ENST00000518743 E2F4Q16254 413 aa9.06□□□□□ -0.96
HMGB1P23-201ENST00000518743 KIF12Q96FN5 646 aa9.06□□□□□ -0.96
HMGB1P23-201ENST00000518743 MFRPQ9BY79 579 aa9.06□□□□□ -0.96
HMGB1P23-201ENST00000518743 MAP3K13O43283 966 aa9.05□□□□□ -0.96
HMGB1P23-201ENST00000518743 SMYD5Q6GMV2 418 aa9.05□□□□□ -0.96
HMGB1P23-201ENST00000518743 CADPS2Q86UW7 1296 aa9.05□□□□□ -0.96
HMGB1P23-201ENST00000518743 DCBLD2Q96PD2 775 aa9.05□□□□□ -0.96
HMGB1P23-201ENST00000518743 PCDHB8Q9UN66 801 aa9.05□□□□□ -0.96
HMGB1P23-201ENST00000518743 PCDHB13Q9Y5F0 798 aa9.05□□□□□ -0.96
HMGB1P23-201ENST00000518743 TIMELESSQ9UNS1 1208 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms