RNA–Protein interactions for RNA: ENST00000516405.1

RNU6-542P-201, Transcript of RNA, U6 small nuclear 542, pseudogene, humanhuman

BASIC

Gene RNU6-542P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-542P-201ENST00000516405 TMEM121BQ9BXQ6 578 aaPredicted RBP3.8□□□□□ -1.8
RNU6-542P-201ENST00000516405 ATN1P54259 1190 aaPredicted RBP3.79□□□□□ -1.8
RNU6-542P-201ENST00000516405 SSUH2Q9Y2M2 353 aa3.79□□□□□ -1.8
RNU6-542P-201ENST00000516405 SLAIN1Q8ND83 568 aa3.78□□□□□ -1.8
RNU6-542P-201ENST00000516405 MYCNP04198 464 aaPredicted RBP3.76□□□□□ -1.81
RNU6-542P-201ENST00000516405 RNF166Q96A37 237 aaPredicted RBP3.76□□□□□ -1.81
RNU6-542P-201ENST00000516405 MS4A3Q96HJ5 214 aa3.76□□□□□ -1.81
RNU6-542P-201ENST00000516405 COLQQ9Y215 455 aaPredicted RBP3.76□□□□□ -1.81
RNU6-542P-201ENST00000516405 ZNF692Q9BU19 519 aaPredicted RBP3.74□□□□□ -1.81
RNU6-542P-201ENST00000516405 HS3ST6Q96QI5 342 aa3.72□□□□□ -1.81
RNU6-542P-201ENST00000516405 LOC100996750A0A140TA64 210 aa3.68□□□□□ -1.82
RNU6-542P-201ENST00000516405 FAM205CA6NFA0 338 aa3.68□□□□□ -1.82
RNU6-542P-201ENST00000516405 EMP3P54852 163 aa3.68□□□□□ -1.82
RNU6-542P-201ENST00000516405 PABPN1Q86U42 306 aaKnown RBP eCLIP3.68□□□□□ -1.82
RNU6-542P-201ENST00000516405 KRTAP4-6Q9BYQ5 205 aa3.68□□□□□ -1.82
RNU6-542P-201ENST00000516405 BMP2KQ9NSY1 1161 aaPredicted RBP3.66□□□□□ -1.82
RNU6-542P-201ENST00000516405 MYT1LQ9UL68 1186 aa3.66□□□□□ -1.82
RNU6-542P-201ENST00000516405 PAK3O75914 559 aaPredicted RBP3.65□□□□□ -1.83
RNU6-542P-201ENST00000516405 SEC24BO95487 1268 aa3.65□□□□□ -1.83
RNU6-542P-201ENST00000516405 CREBZFQ9NS37 354 aa3.65□□□□□ -1.83
RNU6-542P-201ENST00000516405 TRPC6Q9Y210 931 aa3.65□□□□□ -1.83
RNU6-542P-201ENST00000516405 SNPHO15079 494 aa3.63□□□□□ -1.83
RNU6-542P-201ENST00000516405 MKRN4PQ13434 485 aaPredicted RBP3.63□□□□□ -1.83
RNU6-542P-201ENST00000516405 PLA2G2EQ9NZK7 142 aa3.62□□□□□ -1.83
RNU6-542P-201ENST00000516405 FBLN2P98095 1184 aa3.61□□□□□ -1.83
RNU6-542P-201ENST00000516405 IRX2Q9BZI1 471 aaPredicted RBP3.56□□□□□ -1.84
RNU6-542P-201ENST00000516405 TTLL13PA6NNM8 815 aa3.55□□□□□ -1.84
RNU6-542P-201ENST00000516405 TIE1P35590 1138 aa3.55□□□□□ -1.84
RNU6-542P-201ENST00000516405 IER5LQ5T953 404 aa3.54□□□□□ -1.84
RNU6-542P-201ENST00000516405 MNX1P50219 401 aaPredicted RBP3.52□□□□□ -1.85
RNU6-542P-201ENST00000516405 KIF12Q96FN5 646 aa3.52□□□□□ -1.85
RNU6-542P-201ENST00000516405 TRIM35Q9UPQ4 493 aa3.51□□□□□ -1.85
RNU6-542P-201ENST00000516405 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.49□□□□□ -1.85
RNU6-542P-201ENST00000516405 CCDC61Q9Y6R9 512 aa3.49□□□□□ -1.85
RNU6-542P-201ENST00000516405 LCE2BO14633 110 aa3.47□□□□□ -1.85
RNU6-542P-201ENST00000516405 PTGER2P43116 358 aa3.47□□□□□ -1.85
RNU6-542P-201ENST00000516405 MAP3K13O43283 966 aa3.46□□□□□ -1.86
RNU6-542P-201ENST00000516405 NPM1P06748 294 aaKnown RBP eCLIP3.46□□□□□ -1.86
RNU6-542P-201ENST00000516405 IRX5P78411 483 aaPredicted RBP3.46□□□□□ -1.86
RNU6-542P-201ENST00000516405 PLCG2P16885 1265 aa3.45□□□□□ -1.86
RNU6-542P-201ENST00000516405 Q6ZNB5 142 aa3.45□□□□□ -1.86
RNU6-542P-201ENST00000516405 ERBB3P21860 1342 aa3.44□□□□□ -1.86
RNU6-542P-201ENST00000516405 TSPYL2Q9H2G4 693 aaPredicted RBP3.44□□□□□ -1.86
RNU6-542P-201ENST00000516405 RGS20O76081 388 aa3.42□□□□□ -1.86
RNU6-542P-201ENST00000516405 VARS2Q5ST30 1063 aaKnown RBP3.42□□□□□ -1.86
RNU6-542P-201ENST00000516405 HOXB3P14651 431 aaPredicted RBP3.41□□□□□ -1.86
RNU6-542P-201ENST00000516405 HOXB1P14653 301 aaPredicted RBP3.41□□□□□ -1.86
RNU6-542P-201ENST00000516405 HCSTQ9UBK5 93 aa3.41□□□□□ -1.86
RNU6-542P-201ENST00000516405 ANKRD13DQ6ZTN6 518 aa3.4□□□□□ -1.87
RNU6-542P-201ENST00000516405 ZNF687Q8N1G0 1237 aa3.4□□□□□ -1.87
RNU6-542P-201ENST00000516405 ZNF775Q96BV0 537 aaPredicted RBP3.38□□□□□ -1.87
RNU6-542P-201ENST00000516405 OCEL1Q9H607 264 aa3.38□□□□□ -1.87
RNU6-542P-201ENST00000516405 KCNA4P22459 653 aa3.36□□□□□ -1.87
RNU6-542P-201ENST00000516405 TRAF7Q6Q0C0 670 aa3.33□□□□□ -1.88
RNU6-542P-201ENST00000516405 STAG3Q9UJ98 1225 aa3.33□□□□□ -1.88
RNU6-542P-201ENST00000516405 C3orf67Q6ZVT6 689 aa3.32□□□□□ -1.88
RNU6-542P-201ENST00000516405 TMEM106CQ9BVX2 250 aa3.32□□□□□ -1.88
RNU6-542P-201ENST00000516405 FOXD4L1Q9NU39 408 aa3.32□□□□□ -1.88
RNU6-542P-201ENST00000516405 LSM11P83369 360 aaKnown RBP eCLIP3.31□□□□□ -1.88
RNU6-542P-201ENST00000516405 A0A0G2JS52 829 aa3.3□□□□□ -1.88
RNU6-542P-201ENST00000516405 SUZ12Q15022 739 aaKnown RBP3.3□□□□□ -1.88
RNU6-542P-201ENST00000516405 ZNF710Q8N1W2 664 aa3.3□□□□□ -1.88
RNU6-542P-201ENST00000516405 PDCD7Q8N8D1 485 aaKnown RBP3.29□□□□□ -1.88
RNU6-542P-201ENST00000516405 IFFO2Q5TF58 517 aa3.28□□□□□ -1.88
RNU6-542P-201ENST00000516405 ZNF787Q6DD87 383 aa3.28□□□□□ -1.88
RNU6-542P-201ENST00000516405 IFNL1Q8IU54 200 aa3.27□□□□□ -1.89
RNU6-542P-201ENST00000516405 PCDHB13Q9Y5F0 798 aa3.27□□□□□ -1.89
RNU6-542P-201ENST00000516405 ATXN8OSP0DMR3 200 aa3.26□□□□□ -1.89
RNU6-542P-201ENST00000516405 POTEEQ6S8J3 1075 aa3.26□□□□□ -1.89
RNU6-542P-201ENST00000516405 SGIP1Q9BQI5 828 aa3.26□□□□□ -1.89
RNU6-542P-201ENST00000516405 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.25□□□□□ -1.89
RNU6-542P-201ENST00000516405 LCE2AQ5TA79 106 aaPredicted RBP3.25□□□□□ -1.89
RNU6-542P-201ENST00000516405 DOK7Q18PE1 504 aa3.24□□□□□ -1.89
RNU6-542P-201ENST00000516405 KRTAP4-8Q9BYQ9 185 aa3.24□□□□□ -1.89
RNU6-542P-201ENST00000516405 RASEFQ8IZ41 740 aa3.23□□□□□ -1.89
RNU6-542P-201ENST00000516405 L3MBTL3Q96JM7 780 aaPredicted RBP3.23□□□□□ -1.89
RNU6-542P-201ENST00000516405 GPR153Q6NV75 609 aa3.22□□□□□ -1.89
RNU6-542P-201ENST00000516405 KRTAP9-6A0A140TA67 174 aa3.2□□□□□ -1.9
RNU6-542P-201ENST00000516405 LAPTM4AQ15012 233 aa3.2□□□□□ -1.9
RNU6-542P-201ENST00000516405 KRTAP9-2Q9BYQ4 174 aa3.2□□□□□ -1.9
RNU6-542P-201ENST00000516405 GFRA3O60609 400 aa3.19□□□□□ -1.9
RNU6-542P-201ENST00000516405 AXIN2Q9Y2T1 843 aa3.19□□□□□ -1.9
RNU6-542P-201ENST00000516405 KRTAP1-3Q8IUG1 177 aa3.18□□□□□ -1.9
RNU6-542P-201ENST00000516405 KCTD12Q96CX2 325 aaKnown RBP3.18□□□□□ -1.9
RNU6-542P-201ENST00000516405 STK17AQ9UEE5 414 aa3.18□□□□□ -1.9
RNU6-542P-201ENST00000516405 RIMBP2O15034 1052 aa3.17□□□□□ -1.9
RNU6-542P-201ENST00000516405 ADGRD1Q6QNK2 874 aa3.16□□□□□ -1.9
RNU6-542P-201ENST00000516405 TREML4Q6UXN2 200 aa3.16□□□□□ -1.9
RNU6-542P-201ENST00000516405 ZSWIM6Q9HCJ5 1215 aa3.16□□□□□ -1.9
RNU6-542P-201ENST00000516405 ZNF316A6NFI3 1004 aaPredicted RBP3.15□□□□□ -1.91
RNU6-542P-201ENST00000516405 HRO43593 1189 aa3.15□□□□□ -1.91
RNU6-542P-201ENST00000516405 DPY19L2Q6NUT2 758 aa3.15□□□□□ -1.91
RNU6-542P-201ENST00000516405 PTPN5P54829 565 aa3.14□□□□□ -1.91
RNU6-542P-201ENST00000516405 ARSIQ5FYB1 569 aa3.13□□□□□ -1.91
RNU6-542P-201ENST00000516405 KHSRPQ92945 711 aaKnown RBP eCLIP3.13□□□□□ -1.91
RNU6-542P-201ENST00000516405 POTECB2RU33 542 aa3.12□□□□□ -1.91
RNU6-542P-201ENST00000516405 ZBTB22O15209 634 aa3.12□□□□□ -1.91
RNU6-542P-201ENST00000516405 PBX2P40425 430 aa3.12□□□□□ -1.91
RNU6-542P-201ENST00000516405 NRG2O14511 850 aaPredicted RBP3.1□□□□□ -1.91
RNU6-542P-201ENST00000516405 XP32Q5T750 250 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms