RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 PPP6R1Q9UPN7 881 aa10.72□□□□□ -0.69
NIPBL-208ENST00000514335 SUPT5HO00267 1087 aaKnown RBP10.72□□□□□ -0.69
NIPBL-208ENST00000514335 UBTFP17480 764 aaKnown RBP10.71□□□□□ -0.69
NIPBL-208ENST00000514335 CNKSR2Q8WXI2 1034 aa10.71□□□□□ -0.69
NIPBL-208ENST00000514335 ZEB1P37275 1124 aaPredicted RBP10.7□□□□□ -0.7
NIPBL-208ENST00000514335 IRX6P78412 446 aaPredicted RBP10.7□□□□□ -0.7
NIPBL-208ENST00000514335 ABCC8Q09428 1581 aa10.68□□□□□ -0.7
NIPBL-208ENST00000514335 NEUROD1Q13562 356 aa10.68□□□□□ -0.7
NIPBL-208ENST00000514335 ADRA2BP18089 450 aa10.67□□□□□ -0.7
NIPBL-208ENST00000514335 RBM10P98175 930 aaKnown RBP10.64□□□□□ -0.71
NIPBL-208ENST00000514335 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.64□□□□□ -0.71
NIPBL-208ENST00000514335 IGSF3O75054 1194 aa10.63□□□□□ -0.71
NIPBL-208ENST00000514335 CDK11BP21127 795 aaKnown RBP10.63□□□□□ -0.71
NIPBL-208ENST00000514335 PLCB2Q00722 1185 aa10.63□□□□□ -0.71
NIPBL-208ENST00000514335 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.63□□□□□ -0.71
NIPBL-208ENST00000514335 CDK11AQ9UQ88 783 aaPredicted RBP10.63□□□□□ -0.71
NIPBL-208ENST00000514335 RSPH6AQ9H0K4 717 aa10.62□□□□□ -0.71
NIPBL-208ENST00000514335 DEKP35659 375 aaKnown RBP10.6□□□□□ -0.71
NIPBL-208ENST00000514335 RSPH4AQ5TD94 716 aa10.6□□□□□ -0.71
NIPBL-208ENST00000514335 CFAP44Q96MT7 982 aa10.6□□□□□ -0.71
NIPBL-208ENST00000514335 RSF1Q96T23 1441 aaPredicted RBP10.59□□□□□ -0.71
NIPBL-208ENST00000514335 CADPSQ9ULU8 1353 aa10.57□□□□□ -0.72
NIPBL-208ENST00000514335 CFTRP13569 1480 aa10.57□□□□□ -0.72
NIPBL-208ENST00000514335 ZMYND15Q9H091 742 aa10.55□□□□□ -0.72
NIPBL-208ENST00000514335 DCAF8L2P0C7V8 631 aa10.54□□□□□ -0.72
NIPBL-208ENST00000514335 ERICH6BQ5W0A0 696 aa10.54□□□□□ -0.72
NIPBL-208ENST00000514335 SENP3Q9H4L4 574 aaPredicted RBP10.54□□□□□ -0.72
NIPBL-208ENST00000514335 IFT140Q96RY7 1462 aa10.54□□□□□ -0.72
NIPBL-208ENST00000514335 CEP164Q9UPV0 1460 aa10.54□□□□□ -0.72
NIPBL-208ENST00000514335 NAP1L5Q96NT1 182 aaPredicted RBP10.53□□□□□ -0.72
NIPBL-208ENST00000514335 CLSPNQ9HAW4 1339 aa10.52□□□□□ -0.73
NIPBL-208ENST00000514335 TOP2AP11388 1531 aaKnown RBP10.51□□□□□ -0.73
NIPBL-208ENST00000514335 NESP48681 1621 aa10.5□□□□□ -0.73
NIPBL-208ENST00000514335 RIMBP3CA6NJZ7 1639 aa10.49□□□□□ -0.73
NIPBL-208ENST00000514335 RIMBP3BA6NNM3 1639 aa10.49□□□□□ -0.73
NIPBL-208ENST00000514335 RIMBP3Q9UFD9 1639 aa10.49□□□□□ -0.73
NIPBL-208ENST00000514335 HSP90B1P14625 803 aaKnown RBP10.46□□□□□ -0.74
NIPBL-208ENST00000514335 POLR3GLQ9BT43 218 aa10.45□□□□□ -0.74
NIPBL-208ENST00000514335 CLASP1Q7Z460 1538 aa10.43□□□□□ -0.74
NIPBL-208ENST00000514335 DNMBPQ6XZF7 1577 aa10.42□□□□□ -0.74
NIPBL-208ENST00000514335 BCCIPQ9P287 314 aaKnown RBP eCLIP10.4□□□□□ -0.74
NIPBL-208ENST00000514335 BRPF3Q9ULD4 1205 aa10.4□□□□□ -0.74
NIPBL-208ENST00000514335 ZNF326Q5BKZ1 582 aaKnown RBP10.4□□□□□ -0.75
NIPBL-208ENST00000514335 FANCD2Q9BXW9 1451 aa10.38□□□□□ -0.75
NIPBL-208ENST00000514335 TARBP1Q13395 1621 aaKnown RBP10.38□□□□□ -0.75
NIPBL-208ENST00000514335 VSIG10Q8N0Z9 540 aa10.37□□□□□ -0.75
NIPBL-208ENST00000514335 MYT1LQ9UL68 1186 aa10.37□□□□□ -0.75
NIPBL-208ENST00000514335 NAP1L2Q9ULW6 460 aaPredicted RBP10.36□□□□□ -0.75
NIPBL-208ENST00000514335 MROH2BQ7Z745 1585 aa10.35□□□□□ -0.75
NIPBL-208ENST00000514335 ARHGEF11O15085 1522 aa10.34□□□□□ -0.75
NIPBL-208ENST00000514335 GLIPR1L2Q4G1C9 344 aa10.34□□□□□ -0.75
NIPBL-208ENST00000514335 URB2Q14146 1524 aaKnown RBP10.32□□□□□ -0.76
NIPBL-208ENST00000514335 ZFP91Q96JP5 570 aaPredicted RBP10.32□□□□□ -0.76
NIPBL-208ENST00000514335 KDM2AQ9Y2K7 1162 aa10.32□□□□□ -0.76
NIPBL-208ENST00000514335 EIF4G3O43432 1585 aaKnown RBP10.32□□□□□ -0.76
NIPBL-208ENST00000514335 MAGI1Q96QZ7 1491 aaPredicted RBP10.32□□□□□ -0.76
NIPBL-208ENST00000514335 SYNJ1O43426 1573 aa10.31□□□□□ -0.76
NIPBL-208ENST00000514335 PRDM10Q9NQV6 1147 aa10.31□□□□□ -0.76
NIPBL-208ENST00000514335 CHMP4BQ9H444 224 aaKnown RBP10.3□□□□□ -0.76
NIPBL-208ENST00000514335 SHROOM2Q13796 1616 aa10.3□□□□□ -0.76
NIPBL-208ENST00000514335 TRIM41Q8WV44 630 aa10.3□□□□□ -0.76
NIPBL-208ENST00000514335 CCDC9Q9Y3X0 531 aaKnown RBP10.29□□□□□ -0.76
NIPBL-208ENST00000514335 TMED8Q6PL24 325 aaPredicted RBP10.29□□□□□ -0.76
NIPBL-208ENST00000514335 CHD1O14646 1710 aa10.28□□□□□ -0.76
NIPBL-208ENST00000514335 CNPY4Q8N129 248 aa10.27□□□□□ -0.76
NIPBL-208ENST00000514335 TSHZ2Q9NRE2 1034 aa10.27□□□□□ -0.76
NIPBL-208ENST00000514335 FBLN2P98095 1184 aa10.26□□□□□ -0.77
NIPBL-208ENST00000514335 OSCARQ8IYS5 282 aa10.25□□□□□ -0.77
NIPBL-208ENST00000514335 SECISBP2LQ93073 1101 aaKnown RBP10.23□□□□□ -0.77
NIPBL-208ENST00000514335 TOPBP1Q92547 1522 aa10.23□□□□□ -0.77
NIPBL-208ENST00000514335 ZNF592Q92610 1267 aa10.23□□□□□ -0.77
NIPBL-208ENST00000514335 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.22□□□□□ -0.77
NIPBL-208ENST00000514335 PCGF6Q9BYE7 350 aa10.21□□□□□ -0.78
NIPBL-208ENST00000514335 WIZO95785 1651 aa10.19□□□□□ -0.78
NIPBL-208ENST00000514335 KCNG1Q9UIX4 513 aa10.18□□□□□ -0.78
NIPBL-208ENST00000514335 ARAP1Q96P48 1450 aa10.18□□□□□ -0.78
NIPBL-208ENST00000514335 ABCA5Q8WWZ7 1642 aa10.18□□□□□ -0.78
NIPBL-208ENST00000514335 IL27Q8NEV9 243 aa10.18□□□□□ -0.78
NIPBL-208ENST00000514335 PBRM1Q86U86 1689 aa10.17□□□□□ -0.78
NIPBL-208ENST00000514335 TICAM2Q86XR7 235 aa10.17□□□□□ -0.78
NIPBL-208ENST00000514335 IPO4Q8TEX9 1081 aaKnown RBP10.16□□□□□ -0.78
NIPBL-208ENST00000514335 BBXQ8WY36 941 aaPredicted RBP10.16□□□□□ -0.78
NIPBL-208ENST00000514335 PUS7Q96PZ0 661 aaKnown RBP10.16□□□□□ -0.78
NIPBL-208ENST00000514335 NCLP19338 710 aaKnown RBP10.15□□□□□ -0.78
NIPBL-208ENST00000514335 TEX2Q8IWB9 1127 aa10.15□□□□□ -0.78
NIPBL-208ENST00000514335 MAPKBP1O60336 1514 aa10.15□□□□□ -0.78
NIPBL-208ENST00000514335 CHRM1P11229 460 aaPredicted RBP10.14□□□□□ -0.79
NIPBL-208ENST00000514335 SYNJ2O15056 1496 aa10.12□□□□□ -0.79
NIPBL-208ENST00000514335 FOXD1Q16676 465 aa10.12□□□□□ -0.79
NIPBL-208ENST00000514335 WWC1Q8IX03 1113 aa10.12□□□□□ -0.79
NIPBL-208ENST00000514335 HMGB1P09429 215 aaKnown RBP10.11□□□□□ -0.79
NIPBL-208ENST00000514335 GTF2E1P29083 439 aaPredicted RBP10.1□□□□□ -0.79
NIPBL-208ENST00000514335 RNF216Q9NWF9 866 aaPredicted RBP10.1□□□□□ -0.79
NIPBL-208ENST00000514335 GLI2P10070 1586 aa10.1□□□□□ -0.79
NIPBL-208ENST00000514335 GRIN2BQ13224 1484 aa10.09□□□□□ -0.79
NIPBL-208ENST00000514335 BIVM-ERCC5R4GMW8 1640 aa10.09□□□□□ -0.79
NIPBL-208ENST00000514335 ZNF428Q96B54 188 aa10.08□□□□□ -0.8
NIPBL-208ENST00000514335 FAM43BQ6ZT52 329 aaPredicted RBP10.07□□□□□ -0.8
NIPBL-208ENST00000514335 ABCA10Q8WWZ4 1543 aa10.07□□□□□ -0.8
NIPBL-208ENST00000514335 ERICH3Q5RHP9 1530 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms