RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 ATMINO43313 823 aaPredicted RBP11.56□□□□□ -0.56
NUP54-212ENST00000513248 KIF12Q96FN5 646 aa11.56□□□□□ -0.56
NUP54-212ENST00000513248 SLC39A7Q92504 469 aa11.54□□□□□ -0.56
NUP54-212ENST00000513248 POTEB2H3BUK9 544 aa11.53□□□□□ -0.56
NUP54-212ENST00000513248 C7P10643 843 aa11.53□□□□□ -0.56
NUP54-212ENST00000513248 OTUD5Q96G74 571 aa11.53□□□□□ -0.56
NUP54-212ENST00000513248 ZBTB47Q9UFB7 747 aaPredicted RBP11.53□□□□□ -0.56
NUP54-212ENST00000513248 PLCD3Q8N3E9 789 aa11.52□□□□□ -0.57
NUP54-212ENST00000513248 RASEFQ8IZ41 740 aa11.51□□□□□ -0.57
NUP54-212ENST00000513248 METRNQ9UJH8 293 aa11.51□□□□□ -0.57
NUP54-212ENST00000513248 FKBP8Q14318 412 aa11.47□□□□□ -0.57
NUP54-212ENST00000513248 MAP3K13O43283 966 aa11.45□□□□□ -0.58
NUP54-212ENST00000513248 TIE1P35590 1138 aa11.45□□□□□ -0.58
NUP54-212ENST00000513248 ATN1P54259 1190 aaPredicted RBP11.44□□□□□ -0.58
NUP54-212ENST00000513248 SGIP1Q9BQI5 828 aa11.44□□□□□ -0.58
NUP54-212ENST00000513248 NUBP1P53384 320 aa11.43□□□□□ -0.58
NUP54-212ENST00000513248 BMP2KQ9NSY1 1161 aaPredicted RBP11.43□□□□□ -0.58
NUP54-212ENST00000513248 MAMSTRQ6ZN01 415 aa11.41□□□□□ -0.58
NUP54-212ENST00000513248 TRPC6Q9Y210 931 aa11.39□□□□□ -0.59
NUP54-212ENST00000513248 POTEJP0CG39 1038 aa11.37□□□□□ -0.59
NUP54-212ENST00000513248 FAM212AQ96EL1 285 aa11.37□□□□□ -0.59
NUP54-212ENST00000513248 FBXO3Q9UK99 471 aa11.36□□□□□ -0.59
NUP54-212ENST00000513248 TTLL13PA6NNM8 815 aa11.34□□□□□ -0.59
NUP54-212ENST00000513248 PCDHB13Q9Y5F0 798 aa11.34□□□□□ -0.59
NUP54-212ENST00000513248 IER5LQ5T953 404 aa11.31□□□□□ -0.6
NUP54-212ENST00000513248 SCUBE2Q9NQ36 999 aa11.31□□□□□ -0.6
NUP54-212ENST00000513248 POTEFA5A3E0 1075 aa11.3□□□□□ -0.6
NUP54-212ENST00000513248 IFNL1Q8IU54 200 aa11.27□□□□□ -0.61
NUP54-212ENST00000513248 TRIM35Q9UPQ4 493 aa11.26□□□□□ -0.61
NUP54-212ENST00000513248 SEC24BO95487 1268 aa11.25□□□□□ -0.61
NUP54-212ENST00000513248 POTEMA6NI47 508 aa11.24□□□□□ -0.61
NUP54-212ENST00000513248 COLQQ9Y215 455 aaPredicted RBP11.23□□□□□ -0.61
NUP54-212ENST00000513248 POTEGQ6S5H5 508 aa11.21□□□□□ -0.61
NUP54-212ENST00000513248 TMEM106CQ9BVX2 250 aa11.2□□□□□ -0.62
NUP54-212ENST00000513248 DCAF8Q5TAQ9 597 aa11.19□□□□□ -0.62
NUP54-212ENST00000513248 VASPP50552 380 aaPredicted RBP11.18□□□□□ -0.62
NUP54-212ENST00000513248 PCDH10Q9P2E7 1040 aa11.17□□□□□ -0.62
NUP54-212ENST00000513248 PLSCR2Q9NRY7 297 aa11.15□□□□□ -0.62
NUP54-212ENST00000513248 PYGBP11216 843 aa11.14□□□□□ -0.63
NUP54-212ENST00000513248 GSE1Q14687 1217 aa11.13□□□□□ -0.63
NUP54-212ENST00000513248 LCE2DQ5TA82 110 aaPredicted RBP11.13□□□□□ -0.63
NUP54-212ENST00000513248 IRX5P78411 483 aaPredicted RBP11.12□□□□□ -0.63
NUP54-212ENST00000513248 PLCG2P16885 1265 aa11.11□□□□□ -0.63
NUP54-212ENST00000513248 KLHL34Q8N239 644 aa11.1□□□□□ -0.63
NUP54-212ENST00000513248 FAM163AQ96GL9 167 aaPredicted RBP11.09□□□□□ -0.63
NUP54-212ENST00000513248 CHRM1P11229 460 aaPredicted RBP11.08□□□□□ -0.64
NUP54-212ENST00000513248 ZNF467Q7Z7K2 595 aaPredicted RBP11.07□□□□□ -0.64
NUP54-212ENST00000513248 OCEL1Q9H607 264 aa11.06□□□□□ -0.64
NUP54-212ENST00000513248 PCDHB8Q9UN66 801 aa11.06□□□□□ -0.64
NUP54-212ENST00000513248 SLAIN1Q8ND83 568 aa11.01□□□□□ -0.65
NUP54-212ENST00000513248 SPOCK2Q92563 424 aa10.96□□□□□ -0.65
NUP54-212ENST00000513248 IFNLR1Q8IU57 520 aaPredicted RBP10.94□□□□□ -0.66
NUP54-212ENST00000513248 PDCD7Q8N8D1 485 aaKnown RBP10.94□□□□□ -0.66
NUP54-212ENST00000513248 PSEN1P49768 467 aa10.93□□□□□ -0.66
NUP54-212ENST00000513248 GOLGA2Q08379 1002 aa10.93□□□□□ -0.66
NUP54-212ENST00000513248 MKRN3Q13064 507 aaKnown RBP10.93□□□□□ -0.66
NUP54-212ENST00000513248 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.93□□□□□ -0.66
NUP54-212ENST00000513248 ST18O60284 1047 aa10.91□□□□□ -0.66
NUP54-212ENST00000513248 SNPHO15079 494 aa10.9□□□□□ -0.66
NUP54-212ENST00000513248 PDAP1Q13442 181 aaKnown RBP10.9□□□□□ -0.66
NUP54-212ENST00000513248 L3MBTL3Q96JM7 780 aaPredicted RBP10.89□□□□□ -0.67
NUP54-212ENST00000513248 TMEM121BQ9BXQ6 578 aaPredicted RBP10.89□□□□□ -0.67
NUP54-212ENST00000513248 ILDR1Q86SU0 546 aaPredicted RBP10.88□□□□□ -0.67
NUP54-212ENST00000513248 CDAN1Q8IWY9 1227 aa10.86□□□□□ -0.67
NUP54-212ENST00000513248 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.86□□□□□ -0.672e-8■■■□□ 17
NUP54-212ENST00000513248 CIZ1Q9ULV3 898 aaPredicted RBP10.86□□□□□ -0.67
NUP54-212ENST00000513248 C3orf67Q6ZVT6 689 aa10.84□□□□□ -0.67
NUP54-212ENST00000513248 TRIM41Q8WV44 630 aa10.84□□□□□ -0.67
NUP54-212ENST00000513248 CABP2Q9NPB3 220 aa10.77□□□□□ -0.69
NUP54-212ENST00000513248 BOLA1Q9Y3E2 137 aa10.72□□□□□ -0.69
NUP54-212ENST00000513248 DPY19L2Q6NUT2 758 aa10.71□□□□□ -0.69
NUP54-212ENST00000513248 G3V3G9 751 aa10.7□□□□□ -0.7
NUP54-212ENST00000513248 MARVELD3Q96A59 401 aa10.68□□□□□ -0.7
NUP54-212ENST00000513248 EMP3P54852 163 aa10.65□□□□□ -0.7
NUP54-212ENST00000513248 EFCAB3Q8N7B9 438 aa10.64□□□□□ -0.71
NUP54-212ENST00000513248 RIOK3O14730 519 aaKnown RBP10.63□□□□□ -0.71
NUP54-212ENST00000513248 SOX12O15370 315 aa10.6□□□□□ -0.71
NUP54-212ENST00000513248 HOXB3P14651 431 aaPredicted RBP10.6□□□□□ -0.71
NUP54-212ENST00000513248 SPNS2Q8IVW8 549 aa10.6□□□□□ -0.71
NUP54-212ENST00000513248 VGFO15240 615 aaPredicted RBP10.59□□□□□ -0.71
NUP54-212ENST00000513248 RNF25Q96BH1 459 aaPredicted RBP10.59□□□□□ -0.71
NUP54-212ENST00000513248 MMRN1Q13201 1228 aa10.57□□□□□ -0.72
NUP54-212ENST00000513248 HS3ST6Q96QI5 342 aa10.57□□□□□ -0.72
NUP54-212ENST00000513248 DOK7Q18PE1 504 aa10.56□□□□□ -0.72
NUP54-212ENST00000513248 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.55□□□□□ -0.72
NUP54-212ENST00000513248 ZFP91Q96JP5 570 aaPredicted RBP10.55□□□□□ -0.72
NUP54-212ENST00000513248 FAM205CA6NFA0 338 aa10.54□□□□□ -0.72
NUP54-212ENST00000513248 HOXB1P14653 301 aaPredicted RBP10.54□□□□□ -0.72
NUP54-212ENST00000513248 MICALL2Q8IY33 904 aa10.54□□□□□ -0.72
NUP54-212ENST00000513248 POTEB3A0JP26 581 aa10.53□□□□□ -0.72
NUP54-212ENST00000513248 POTEBQ6S5H4 581 aa10.53□□□□□ -0.72
NUP54-212ENST00000513248 ZNF710Q8N1W2 664 aa10.53□□□□□ -0.72
NUP54-212ENST00000513248 TAOK2Q9UL54 1235 aa10.53□□□□□ -0.72
NUP54-212ENST00000513248 KRTAP3-3Q9BYR6 98 aa10.52□□□□□ -0.73
NUP54-212ENST00000513248 KRTAP3-2Q9BYR7 98 aa10.52□□□□□ -0.73
NUP54-212ENST00000513248 RIMBP2O15034 1052 aa10.51□□□□□ -0.73
NUP54-212ENST00000513248 MS4A4AQ96JQ5 239 aa10.51□□□□□ -0.73
NUP54-212ENST00000513248 ZSWIM6Q9HCJ5 1215 aa10.49□□□□□ -0.73
NUP54-212ENST00000513248 PHF8Q9UPP1 1060 aa10.48□□□□□ -0.73
NUP54-212ENST00000513248 TMEM92Q6UXU6 159 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms