RNA–Protein interactions for RNA: ENST00000508037.1

HMGB3P16-201, Transcript of high mobility group box 3 pseudogene 16, humanhuman

BASIC

Gene HMGB3P16, Length 287 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P16-201ENST00000508037 FAM9AQ8IZU1 332 aaPredicted RBP7.57□□□□□ -1.2
HMGB3P16-201ENST00000508037 PLEKHG5O94827 1062 aa7.56□□□□□ -1.2
HMGB3P16-201ENST00000508037 CENPBP07199 599 aaPredicted RBP7.56□□□□□ -1.2
HMGB3P16-201ENST00000508037 FBXO3Q9UK99 471 aa7.56□□□□□ -1.2
HMGB3P16-201ENST00000508037 MIER1Q8N108 512 aa7.55□□□□□ -1.2
HMGB3P16-201ENST00000508037 BAZ1AQ9NRL2 1556 aaPredicted RBP7.54□□□□□ -1.2
HMGB3P16-201ENST00000508037 WRNQ14191 1432 aaPredicted RBP eCLIP7.53□□□□□ -1.2
HMGB3P16-201ENST00000508037 C19orf67A6NJJ6 358 aa7.53□□□□□ -1.2
HMGB3P16-201ENST00000508037 NPM1P06748 294 aaKnown RBP eCLIP7.53□□□□□ -1.2
HMGB3P16-201ENST00000508037 CCER1Q8TC90 406 aaPredicted RBP7.53□□□□□ -1.2
HMGB3P16-201ENST00000508037 MROH2BQ7Z745 1585 aa7.53□□□□□ -1.2
HMGB3P16-201ENST00000508037 PLCD3Q8N3E9 789 aa7.52□□□□□ -1.21
HMGB3P16-201ENST00000508037 EEA1Q15075 1411 aa7.52□□□□□ -1.21
HMGB3P16-201ENST00000508037 ACIN1Q9UKV3 1341 aaKnown RBP7.52□□□□□ -1.21
HMGB3P16-201ENST00000508037 SP7Q8TDD2 431 aaPredicted RBP7.51□□□□□ -1.21
HMGB3P16-201ENST00000508037 CECR2Q9BXF3 1484 aa7.5□□□□□ -1.21
HMGB3P16-201ENST00000508037 CD44P16070 742 aaKnown RBP7.49□□□□□ -1.21
HMGB3P16-201ENST00000508037 EVX2Q03828 476 aa7.48□□□□□ -1.21
HMGB3P16-201ENST00000508037 EIF4G1Q04637 1599 aaKnown RBP7.48□□□□□ -1.21
HMGB3P16-201ENST00000508037 WIZO95785 1651 aa7.47□□□□□ -1.21
HMGB3P16-201ENST00000508037 MNX1P50219 401 aaPredicted RBP7.47□□□□□ -1.21
HMGB3P16-201ENST00000508037 ZBTB47Q9UFB7 747 aaPredicted RBP7.47□□□□□ -1.21
HMGB3P16-201ENST00000508037 TOP2AP11388 1531 aaKnown RBP7.47□□□□□ -1.21
HMGB3P16-201ENST00000508037 TNIKQ9UKE5 1360 aa7.46□□□□□ -1.21
HMGB3P16-201ENST00000508037 PAK3O75914 559 aaPredicted RBP7.46□□□□□ -1.22
HMGB3P16-201ENST00000508037 DIEXFQ68CQ4 756 aaKnown RBP7.46□□□□□ -1.22
HMGB3P16-201ENST00000508037 CEP162Q5TB80 1403 aa7.44□□□□□ -1.22
HMGB3P16-201ENST00000508037 ZRANB1Q9UGI0 708 aa7.43□□□□□ -1.22
HMGB3P16-201ENST00000508037 VASPP50552 380 aaPredicted RBP7.42□□□□□ -1.22
HMGB3P16-201ENST00000508037 NEUROD1Q13562 356 aa7.41□□□□□ -1.22
HMGB3P16-201ENST00000508037 ZNF316A6NFI3 1004 aaPredicted RBP7.4□□□□□ -1.22
HMGB3P16-201ENST00000508037 SMARCA4P51532 1647 aa7.39□□□□□ -1.23
HMGB3P16-201ENST00000508037 GOLGA3Q08378 1498 aa7.39□□□□□ -1.23
HMGB3P16-201ENST00000508037 CLCN6P51797 869 aa7.39□□□□□ -1.23
HMGB3P16-201ENST00000508037 SMARCA2P51531 1590 aa7.38□□□□□ -1.23
HMGB3P16-201ENST00000508037 CCDC88BA6NC98 1476 aa7.38□□□□□ -1.23
HMGB3P16-201ENST00000508037 KLHL34Q8N239 644 aa7.38□□□□□ -1.23
HMGB3P16-201ENST00000508037 GTF3C3Q9Y5Q9 886 aa7.38□□□□□ -1.23
HMGB3P16-201ENST00000508037 ZNF579Q8NAF0 562 aaKnown RBP7.37□□□□□ -1.23
HMGB3P16-201ENST00000508037 CLSPNQ9HAW4 1339 aa7.36□□□□□ -1.23
HMGB3P16-201ENST00000508037 GABBR2O75899 941 aa7.36□□□□□ -1.23
HMGB3P16-201ENST00000508037 TSPYL2Q9H2G4 693 aaPredicted RBP7.36□□□□□ -1.23
HMGB3P16-201ENST00000508037 UBTFP17480 764 aaKnown RBP7.35□□□□□ -1.23
HMGB3P16-201ENST00000508037 CEP164Q9UPV0 1460 aa7.35□□□□□ -1.23
HMGB3P16-201ENST00000508037 ABCC8Q09428 1581 aa7.34□□□□□ -1.23
HMGB3P16-201ENST00000508037 RASEFQ8IZ41 740 aa7.33□□□□□ -1.24
HMGB3P16-201ENST00000508037 KIF21BO75037 1637 aa7.33□□□□□ -1.24
HMGB3P16-201ENST00000508037 SOGA1O94964 1423 aa7.33□□□□□ -1.24
HMGB3P16-201ENST00000508037 BAZ1BQ9UIG0 1483 aaKnown RBP7.32□□□□□ -1.24
HMGB3P16-201ENST00000508037 NUBP1P53384 320 aa7.32□□□□□ -1.24
HMGB3P16-201ENST00000508037 FAM212AQ96EL1 285 aa7.31□□□□□ -1.24
HMGB3P16-201ENST00000508037 PHF12Q96QT6 1004 aa7.31□□□□□ -1.24
HMGB3P16-201ENST00000508037 PEG3Q9GZU2 1588 aa7.29□□□□□ -1.24
HMGB3P16-201ENST00000508037 CCDC61Q9Y6R9 512 aa7.29□□□□□ -1.24
HMGB3P16-201ENST00000508037 CLIP1P30622 1438 aa7.28□□□□□ -1.24
HMGB3P16-201ENST00000508037 VPS8Q8N3P4 1428 aa7.28□□□□□ -1.24
HMGB3P16-201ENST00000508037 DCAF8Q5TAQ9 597 aa7.28□□□□□ -1.24
HMGB3P16-201ENST00000508037 IFNLR1Q8IU57 520 aaPredicted RBP7.28□□□□□ -1.24
HMGB3P16-201ENST00000508037 SPOCK2Q92563 424 aa7.27□□□□□ -1.25
HMGB3P16-201ENST00000508037 DCBLD2Q96PD2 775 aa7.26□□□□□ -1.25
HMGB3P16-201ENST00000508037 GALR2O43603 387 aaPredicted RBP7.25□□□□□ -1.25
HMGB3P16-201ENST00000508037 GSE1Q14687 1217 aa7.25□□□□□ -1.25
HMGB3P16-201ENST00000508037 TTBK1Q5TCY1 1321 aaPredicted RBP7.25□□□□□ -1.25
HMGB3P16-201ENST00000508037 KIF12Q96FN5 646 aa7.24□□□□□ -1.25
HMGB3P16-201ENST00000508037 RUSC2Q8N2Y8 1516 aa7.23□□□□□ -1.25
HMGB3P16-201ENST00000508037 MS4A3Q96HJ5 214 aa7.22□□□□□ -1.25
HMGB3P16-201ENST00000508037 UNC13AQ9UPW8 1703 aa7.21□□□□□ -1.25
HMGB3P16-201ENST00000508037 MAP3K13O43283 966 aa7.21□□□□□ -1.26
HMGB3P16-201ENST00000508037 YTHDC1Q96MU7 727 aaKnown RBP7.21□□□□□ -1.26
HMGB3P16-201ENST00000508037 ERICH3Q5RHP9 1530 aa7.21□□□□□ -1.26
HMGB3P16-201ENST00000508037 SYNJ1O43426 1573 aa7.2□□□□□ -1.26
HMGB3P16-201ENST00000508037 SGIP1Q9BQI5 828 aa7.2□□□□□ -1.26
HMGB3P16-201ENST00000508037 CIZ1Q9ULV3 898 aaPredicted RBP7.2□□□□□ -1.26
HMGB3P16-201ENST00000508037 PCDHB13Q9Y5F0 798 aa7.19□□□□□ -1.26
HMGB3P16-201ENST00000508037 PYGBP11216 843 aa7.18□□□□□ -1.26
HMGB3P16-201ENST00000508037 TOP2BQ02880 1626 aa7.17□□□□□ -1.26
HMGB3P16-201ENST00000508037 POTEIP0CG38 1075 aa7.17□□□□□ -1.26
HMGB3P16-201ENST00000508037 ATAD2BQ9ULI0 1458 aa7.17□□□□□ -1.26
HMGB3P16-201ENST00000508037 RAPGEF2Q9Y4G8 1499 aa7.17□□□□□ -1.26
HMGB3P16-201ENST00000508037 DHX57Q6P158 1386 aaKnown RBP7.16□□□□□ -1.26
HMGB3P16-201ENST00000508037 CUX2O14529 1486 aa7.15□□□□□ -1.27
HMGB3P16-201ENST00000508037 BICRAQ9NZM4 1560 aa7.15□□□□□ -1.27
HMGB3P16-201ENST00000508037 CHRM1P11229 460 aaPredicted RBP7.14□□□□□ -1.27
HMGB3P16-201ENST00000508037 PRXQ9BXM0 1461 aa7.14□□□□□ -1.27
HMGB3P16-201ENST00000508037 RRBP1Q9P2E9 1410 aaKnown RBP7.14□□□□□ -1.27
HMGB3P16-201ENST00000508037 BIVM-ERCC5R4GMW8 1640 aa7.14□□□□□ -1.27
HMGB3P16-201ENST00000508037 TIE1P35590 1138 aa7.13□□□□□ -1.27
HMGB3P16-201ENST00000508037 ASTLQ6HA08 431 aaPredicted RBP7.13□□□□□ -1.27
HMGB3P16-201ENST00000508037 IFNL1Q8IU54 200 aa7.13□□□□□ -1.27
HMGB3P16-201ENST00000508037 ATMINO43313 823 aaPredicted RBP7.12□□□□□ -1.27
HMGB3P16-201ENST00000508037 ZNF467Q7Z7K2 595 aaPredicted RBP7.11□□□□□ -1.27
HMGB3P16-201ENST00000508037 ARAP1Q96P48 1450 aa7.11□□□□□ -1.27
HMGB3P16-201ENST00000508037 KIF27Q86VH2 1401 aa7.1□□□□□ -1.27
HMGB3P16-201ENST00000508037 BMP2KQ9NSY1 1161 aaPredicted RBP7.1□□□□□ -1.27
HMGB3P16-201ENST00000508037 PCDHB8Q9UN66 801 aa7.1□□□□□ -1.27
HMGB3P16-201ENST00000508037 TRPC6Q9Y210 931 aa7.1□□□□□ -1.27
HMGB3P16-201ENST00000508037 MAP3K1Q13233 1512 aa7.1□□□□□ -1.27
HMGB3P16-201ENST00000508037 CCNB3Q8WWL7 1395 aa7.09□□□□□ -1.27
HMGB3P16-201ENST00000508037 TIMELESSQ9UNS1 1208 aa7.09□□□□□ -1.27
HMGB3P16-201ENST00000508037 SUPT16HQ9Y5B9 1047 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms