RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 FAM163AQ96GL9 167 aaPredicted RBP9.24□□□□□ -0.93
LSM6-205ENST00000507449 SCUBE2Q9NQ36 999 aa9.24□□□□□ -0.93
LSM6-205ENST00000507449 SLC39A7Q92504 469 aa9.22□□□□□ -0.93
LSM6-205ENST00000507449 C7P10643 843 aa9.21□□□□□ -0.94
LSM6-205ENST00000507449 IFNLR1Q8IU57 520 aaPredicted RBP9.2□□□□□ -0.94
LSM6-205ENST00000507449 METRNQ9UJH8 293 aa9.19□□□□□ -0.94
LSM6-205ENST00000507449 STAG3Q9UJ98 1225 aa9.13□□□□□ -0.95
LSM6-205ENST00000507449 NPM1P06748 294 aaKnown RBP eCLIP9.1□□□□□ -0.95
LSM6-205ENST00000507449 CDAN1Q8IWY9 1227 aa9.1□□□□□ -0.95
LSM6-205ENST00000507449 ASTLQ6HA08 431 aaPredicted RBP9.08□□□□□ -0.96
LSM6-205ENST00000507449 PELP1Q8IZL8 1130 aaKnown RBP9.07□□□□□ -0.96
LSM6-205ENST00000507449 PHF12Q96QT6 1004 aa9.07□□□□□ -0.96
LSM6-205ENST00000507449 LCE2DQ5TA82 110 aaPredicted RBP9.05□□□□□ -0.96
LSM6-205ENST00000507449 CREBZFQ9NS37 354 aa9.03□□□□□ -0.96
LSM6-205ENST00000507449 ATMINO43313 823 aaPredicted RBP9.02□□□□□ -0.97
LSM6-205ENST00000507449 PKD2Q13563 968 aa9.01□□□□□ -0.97
LSM6-205ENST00000507449 PLCD3Q8N3E9 789 aa9□□□□□ -0.97
LSM6-205ENST00000507449 MIER1Q8N108 512 aa8.99□□□□□ -0.97
LSM6-205ENST00000507449 KLHL34Q8N239 644 aa8.99□□□□□ -0.97
LSM6-205ENST00000507449 SPOCK2Q92563 424 aa8.99□□□□□ -0.97
LSM6-205ENST00000507449 POTEJP0CG39 1038 aa8.98□□□□□ -0.97
LSM6-205ENST00000507449 SLC24A1O60721 1099 aa8.95□□□□□ -0.98
LSM6-205ENST00000507449 MS4A3Q96HJ5 214 aa8.95□□□□□ -0.98
LSM6-205ENST00000507449 MMRN1Q13201 1228 aa8.93□□□□□ -0.98
LSM6-205ENST00000507449 SEC24BO95487 1268 aa8.9□□□□□ -0.98
LSM6-205ENST00000507449 ATN1P54259 1190 aaPredicted RBP8.86□□□□□ -0.99
LSM6-205ENST00000507449 SPNS2Q8IVW8 549 aa8.86□□□□□ -0.99
LSM6-205ENST00000507449 PLEKHG5O94827 1062 aa8.85□□□□□ -0.99
LSM6-205ENST00000507449 ECM2O94769 699 aaPredicted RBP8.84□□□□□ -0.99
LSM6-205ENST00000507449 ZBTB47Q9UFB7 747 aaPredicted RBP8.84□□□□□ -0.99
LSM6-205ENST00000507449 MNX1P50219 401 aaPredicted RBP8.83□□□□□ -1
LSM6-205ENST00000507449 TMEM121BQ9BXQ6 578 aaPredicted RBP8.82□□□□□ -1
LSM6-205ENST00000507449 ST18O60284 1047 aa8.81□□□□□ -1
LSM6-205ENST00000507449 NUBP1P53384 320 aa8.81□□□□□ -1
LSM6-205ENST00000507449 RGL2O15211 777 aa8.8□□□□□ -1
LSM6-205ENST00000507449 DCAF8L2P0C7V8 631 aa8.79□□□□□ -1
LSM6-205ENST00000507449 SLAIN1Q8ND83 568 aa8.79□□□□□ -1
LSM6-205ENST00000507449 CIZ1Q9ULV3 898 aaPredicted RBP8.79□□□□□ -1
LSM6-205ENST00000507449 SNPHO15079 494 aa8.78□□□□□ -1
LSM6-205ENST00000507449 TIE1P35590 1138 aa8.78□□□□□ -1
LSM6-205ENST00000507449 IER5LQ5T953 404 aa8.75□□□□□ -1.01
LSM6-205ENST00000507449 TSPYL2Q9H2G4 693 aaPredicted RBP8.75□□□□□ -1.01
LSM6-205ENST00000507449 BMP2KQ9NSY1 1161 aaPredicted RBP8.75□□□□□ -1.01
LSM6-205ENST00000507449 PLCB2Q00722 1185 aa8.74□□□□□ -1.01
LSM6-205ENST00000507449 POTEFA5A3E0 1075 aa8.73□□□□□ -1.01
LSM6-205ENST00000507449 RASEFQ8IZ41 740 aa8.71□□□□□ -1.02
LSM6-205ENST00000507449 GSE1Q14687 1217 aa8.7□□□□□ -1.02
LSM6-205ENST00000507449 RNF25Q96BH1 459 aaPredicted RBP8.7□□□□□ -1.02
LSM6-205ENST00000507449 KIF12Q96FN5 646 aa8.7□□□□□ -1.02
LSM6-205ENST00000507449 TRIM41Q8WV44 630 aa8.69□□□□□ -1.02
LSM6-205ENST00000507449 CCDC61Q9Y6R9 512 aa8.69□□□□□ -1.02
LSM6-205ENST00000507449 DCAF8Q5TAQ9 597 aa8.67□□□□□ -1.02
LSM6-205ENST00000507449 COLQQ9Y215 455 aaPredicted RBP8.67□□□□□ -1.02
LSM6-205ENST00000507449 BBXQ8WY36 941 aaPredicted RBP8.65□□□□□ -1.02
LSM6-205ENST00000507449 FAM212AQ96EL1 285 aa8.65□□□□□ -1.02
LSM6-205ENST00000507449 TTLL13PA6NNM8 815 aa8.64□□□□□ -1.03
LSM6-205ENST00000507449 PLCG2P16885 1265 aa8.64□□□□□ -1.03
LSM6-205ENST00000507449 TRIM35Q9UPQ4 493 aa8.62□□□□□ -1.03
LSM6-205ENST00000507449 CHGAP10645 457 aaKnown RBP8.61□□□□□ -1.03
LSM6-205ENST00000507449 MAP3K13O43283 966 aa8.6□□□□□ -1.03
LSM6-205ENST00000507449 CHRM1P11229 460 aaPredicted RBP8.6□□□□□ -1.03
LSM6-205ENST00000507449 RIOK3O14730 519 aaKnown RBP8.58□□□□□ -1.04
LSM6-205ENST00000507449 HAP1P54257 671 aaPredicted RBP8.58□□□□□ -1.04
LSM6-205ENST00000507449 HS6ST3Q8IZP7 471 aa8.58□□□□□ -1.04
LSM6-205ENST00000507449 SGIP1Q9BQI5 828 aa8.58□□□□□ -1.04
LSM6-205ENST00000507449 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.58□□□□□ -1.04
LSM6-205ENST00000507449 PYGBP11216 843 aa8.57□□□□□ -1.04
LSM6-205ENST00000507449 EMP3P54852 163 aa8.57□□□□□ -1.04
LSM6-205ENST00000507449 MARVELD3Q96A59 401 aa8.57□□□□□ -1.04
LSM6-205ENST00000507449 PAXIP1Q6ZW49 1069 aaPredicted RBP8.56□□□□□ -1.04
LSM6-205ENST00000507449 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.56□□□□□ -1.04
LSM6-205ENST00000507449 TRPC6Q9Y210 931 aa8.56□□□□□ -1.04
LSM6-205ENST00000507449 CFAP44Q96MT7 982 aa8.53□□□□□ -1.04
LSM6-205ENST00000507449 DNAJC5Q9H3Z4 198 aa8.53□□□□□ -1.04
LSM6-205ENST00000507449 VGFO15240 615 aaPredicted RBP8.51□□□□□ -1.05
LSM6-205ENST00000507449 NKX1-1Q15270 411 aaPredicted RBP8.51□□□□□ -1.05
LSM6-205ENST00000507449 PCDHB13Q9Y5F0 798 aa8.5□□□□□ -1.05
LSM6-205ENST00000507449 SPRYD3Q8NCJ5 442 aa8.49□□□□□ -1.05
LSM6-205ENST00000507449 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.48□□□□□ -1.05
LSM6-205ENST00000507449 ZFP91Q96JP5 570 aaPredicted RBP8.48□□□□□ -1.05
LSM6-205ENST00000507449 STK25O00506 426 aa8.47□□□□□ -1.05
LSM6-205ENST00000507449 TAOK2Q9UL54 1235 aa8.47□□□□□ -1.05
LSM6-205ENST00000507449 OCEL1Q9H607 264 aa8.46□□□□□ -1.06
LSM6-205ENST00000507449 TSHZ2Q9NRE2 1034 aa8.46□□□□□ -1.06
LSM6-205ENST00000507449 KDM2AQ9Y2K7 1162 aa8.46□□□□□ -1.06
LSM6-205ENST00000507449 VSIG10Q8N0Z9 540 aa8.45□□□□□ -1.06
LSM6-205ENST00000507449 HS3ST6Q96QI5 342 aa8.45□□□□□ -1.06
LSM6-205ENST00000507449 TMEM106CQ9BVX2 250 aa8.45□□□□□ -1.06
LSM6-205ENST00000507449 BCL11BQ9C0K0 894 aaPredicted RBP8.45□□□□□ -1.06
LSM6-205ENST00000507449 FAM205CA6NFA0 338 aa8.44□□□□□ -1.06
LSM6-205ENST00000507449 C3orf67Q6ZVT6 689 aa8.44□□□□□ -1.06
LSM6-205ENST00000507449 GTPBP6O43824 516 aaPredicted RBP8.43□□□□□ -1.06
LSM6-205ENST00000507449 RNF166Q96A37 237 aaPredicted RBP8.43□□□□□ -1.06
LSM6-205ENST00000507449 KRTAP3-3Q9BYR6 98 aa8.43□□□□□ -1.06
LSM6-205ENST00000507449 KRTAP3-2Q9BYR7 98 aa8.43□□□□□ -1.06
LSM6-205ENST00000507449 PCDHB8Q9UN66 801 aa8.43□□□□□ -1.06
LSM6-205ENST00000507449 STK24Q9Y6E0 443 aa8.43□□□□□ -1.06
LSM6-205ENST00000507449 IRX5P78411 483 aaPredicted RBP8.41□□□□□ -1.06
LSM6-205ENST00000507449 ZNF467Q7Z7K2 595 aaPredicted RBP8.41□□□□□ -1.06
LSM6-205ENST00000507449 PDAP1Q13442 181 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms