RNA–Protein interactions for RNA: ENST00000505657.1

CHD1-203, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 3

Gene CHD1, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-203ENST00000505657 ATMINO43313 823 aaPredicted RBP11.71□□□□□ -0.53
CHD1-203ENST00000505657 ASTLQ6HA08 431 aaPredicted RBP11.71□□□□□ -0.53
CHD1-203ENST00000505657 METRNQ9UJH8 293 aa11.69□□□□□ -0.54
CHD1-203ENST00000505657 POTEJP0CG39 1038 aa11.65□□□□□ -0.54
CHD1-203ENST00000505657 C7P10643 843 aa11.65□□□□□ -0.54
CHD1-203ENST00000505657 SLC39A7Q92504 469 aa11.65□□□□□ -0.54
CHD1-203ENST00000505657 CCDC61Q9Y6R9 512 aa11.65□□□□□ -0.54
CHD1-203ENST00000505657 POTEMA6NI47 508 aa11.62□□□□□ -0.55
CHD1-203ENST00000505657 ATN1P54259 1190 aaPredicted RBP11.61□□□□□ -0.55
CHD1-203ENST00000505657 KIF12Q96FN5 646 aa11.6□□□□□ -0.55
CHD1-203ENST00000505657 POTEGQ6S5H5 508 aa11.58□□□□□ -0.56
CHD1-203ENST00000505657 FBXO3Q9UK99 471 aa11.58□□□□□ -0.56
CHD1-203ENST00000505657 MIER1Q8N108 512 aa11.56□□□□□ -0.56
CHD1-203ENST00000505657 TRPC6Q9Y210 931 aa11.56□□□□□ -0.56
CHD1-203ENST00000505657 MAP3K13O43283 966 aa11.54□□□□□ -0.56
CHD1-203ENST00000505657 BMP2KQ9NSY1 1161 aaPredicted RBP11.54□□□□□ -0.56
CHD1-203ENST00000505657 MAMSTRQ6ZN01 415 aa11.53□□□□□ -0.56
CHD1-203ENST00000505657 RASEFQ8IZ41 740 aa11.53□□□□□ -0.56
CHD1-203ENST00000505657 VASPP50552 380 aaPredicted RBP11.52□□□□□ -0.57
CHD1-203ENST00000505657 POTEFA5A3E0 1075 aa11.51□□□□□ -0.57
CHD1-203ENST00000505657 PLEKHG5O94827 1062 aa11.51□□□□□ -0.57
CHD1-203ENST00000505657 TIE1P35590 1138 aa11.46□□□□□ -0.57
CHD1-203ENST00000505657 FAM163AQ96GL9 167 aaPredicted RBP11.46□□□□□ -0.57
CHD1-203ENST00000505657 SCUBE2Q9NQ36 999 aa11.46□□□□□ -0.57
CHD1-203ENST00000505657 LCE2DQ5TA82 110 aaPredicted RBP11.45□□□□□ -0.58
CHD1-203ENST00000505657 PLCD3Q8N3E9 789 aa11.42□□□□□ -0.58
CHD1-203ENST00000505657 TTLL13PA6NNM8 815 aa11.41□□□□□ -0.58
CHD1-203ENST00000505657 COLQQ9Y215 455 aaPredicted RBP11.41□□□□□ -0.58
CHD1-203ENST00000505657 PCDH10Q9P2E7 1040 aa11.4□□□□□ -0.58
CHD1-203ENST00000505657 IFNLR1Q8IU57 520 aaPredicted RBP11.39□□□□□ -0.59
CHD1-203ENST00000505657 SEC24BO95487 1268 aa11.37□□□□□ -0.59
CHD1-203ENST00000505657 PCDHB13Q9Y5F0 798 aa11.37□□□□□ -0.59
CHD1-203ENST00000505657 NUBP1P53384 320 aa11.36□□□□□ -0.59
CHD1-203ENST00000505657 SGIP1Q9BQI5 828 aa11.34□□□□□ -0.59
CHD1-203ENST00000505657 TRIM35Q9UPQ4 493 aa11.34□□□□□ -0.59
CHD1-203ENST00000505657 IFNL1Q8IU54 200 aa11.31□□□□□ -0.6
CHD1-203ENST00000505657 IER5LQ5T953 404 aa11.29□□□□□ -0.6
CHD1-203ENST00000505657 ZBTB47Q9UFB7 747 aaPredicted RBP11.29□□□□□ -0.6
CHD1-203ENST00000505657 KLHL34Q8N239 644 aa11.26□□□□□ -0.61
CHD1-203ENST00000505657 TMEM106CQ9BVX2 250 aa11.25□□□□□ -0.61
CHD1-203ENST00000505657 FAM212AQ96EL1 285 aa11.24□□□□□ -0.61
CHD1-203ENST00000505657 SLAIN1Q8ND83 568 aa11.21□□□□□ -0.61
CHD1-203ENST00000505657 SPOCK2Q92563 424 aa11.18□□□□□ -0.62
CHD1-203ENST00000505657 PLCG2P16885 1265 aa11.17□□□□□ -0.62
CHD1-203ENST00000505657 DCAF8Q5TAQ9 597 aa11.17□□□□□ -0.62
CHD1-203ENST00000505657 CDAN1Q8IWY9 1227 aa11.17□□□□□ -0.62
CHD1-203ENST00000505657 RTN4Q9NQC3 1192 aaKnown RBP11.17□□□□□ -0.62
CHD1-203ENST00000505657 IRX5P78411 483 aaPredicted RBP11.16□□□□□ -0.62
CHD1-203ENST00000505657 ST18O60284 1047 aa11.15□□□□□ -0.62
CHD1-203ENST00000505657 PYGBP11216 843 aa11.15□□□□□ -0.62
CHD1-203ENST00000505657 PCDHB8Q9UN66 801 aa11.12□□□□□ -0.63
CHD1-203ENST00000505657 AMER1Q5JTC6 1135 aaPredicted RBP11.1□□□□□ -0.63
CHD1-203ENST00000505657 OCEL1Q9H607 264 aa11.1□□□□□ -0.63
CHD1-203ENST00000505657 PKD2Q13563 968 aa11.04□□□□□ -0.64
CHD1-203ENST00000505657 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.01□□□□□ -0.65
CHD1-203ENST00000505657 CIZ1Q9ULV3 898 aaPredicted RBP11.01□□□□□ -0.65
CHD1-203ENST00000505657 SNPHO15079 494 aa10.96□□□□□ -0.65
CHD1-203ENST00000505657 PDCD7Q8N8D1 485 aaKnown RBP10.96□□□□□ -0.65
CHD1-203ENST00000505657 MARVELD3Q96A59 401 aa10.96□□□□□ -0.65
CHD1-203ENST00000505657 GSE1Q14687 1217 aa10.95□□□□□ -0.66
CHD1-203ENST00000505657 TMEM121BQ9BXQ6 578 aaPredicted RBP10.95□□□□□ -0.66
CHD1-203ENST00000505657 ZNF467Q7Z7K2 595 aaPredicted RBP10.93□□□□□ -0.66
CHD1-203ENST00000505657 ECM2O94769 699 aaPredicted RBP10.92□□□□□ -0.66
CHD1-203ENST00000505657 MKRN3Q13064 507 aaKnown RBP10.92□□□□□ -0.66
CHD1-203ENST00000505657 GOLGA2Q08379 1002 aa10.91□□□□□ -0.66
CHD1-203ENST00000505657 SPNS2Q8IVW8 549 aa10.91□□□□□ -0.66
CHD1-203ENST00000505657 CHRM1P11229 460 aaPredicted RBP10.9□□□□□ -0.66
CHD1-203ENST00000505657 MMRN1Q13201 1228 aa10.89□□□□□ -0.67
CHD1-203ENST00000505657 PSEN1P49768 467 aa10.88□□□□□ -0.67
CHD1-203ENST00000505657 C3orf67Q6ZVT6 689 aa10.88□□□□□ -0.67
CHD1-203ENST00000505657 L3MBTL3Q96JM7 780 aaPredicted RBP10.88□□□□□ -0.67
CHD1-203ENST00000505657 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.88□□□□□ -0.674e-7■■■□□ 15.1
CHD1-203ENST00000505657 RGL2O15211 777 aa10.86□□□□□ -0.67
CHD1-203ENST00000505657 RNF25Q96BH1 459 aaPredicted RBP10.84□□□□□ -0.67
CHD1-203ENST00000505657 TRIM41Q8WV44 630 aa10.83□□□□□ -0.68
CHD1-203ENST00000505657 EMP3P54852 163 aa10.82□□□□□ -0.68
CHD1-203ENST00000505657 DPY19L2Q6NUT2 758 aa10.82□□□□□ -0.68
CHD1-203ENST00000505657 POTEB3A0JP26 581 aa10.8□□□□□ -0.68
CHD1-203ENST00000505657 POTEBQ6S5H4 581 aa10.8□□□□□ -0.68
CHD1-203ENST00000505657 ILDR1Q86SU0 546 aaPredicted RBP10.79□□□□□ -0.68
CHD1-203ENST00000505657 PDAP1Q13442 181 aaKnown RBP10.78□□□□□ -0.68
CHD1-203ENST00000505657 FAM205CA6NFA0 338 aa10.77□□□□□ -0.69
CHD1-203ENST00000505657 HS3ST6Q96QI5 342 aa10.77□□□□□ -0.69
CHD1-203ENST00000505657 CABP2Q9NPB3 220 aa10.76□□□□□ -0.69
CHD1-203ENST00000505657 KRTAP3-3Q9BYR6 98 aa10.74□□□□□ -0.69
CHD1-203ENST00000505657 KRTAP3-2Q9BYR7 98 aa10.74□□□□□ -0.69
CHD1-203ENST00000505657 DCAF8L2P0C7V8 631 aa10.73□□□□□ -0.69
CHD1-203ENST00000505657 RIOK3O14730 519 aaKnown RBP10.72□□□□□ -0.69
CHD1-203ENST00000505657 BOLA1Q9Y3E2 137 aa10.72□□□□□ -0.69
CHD1-203ENST00000505657 G3V3G9 751 aa10.69□□□□□ -0.7
CHD1-203ENST00000505657 HOXB3P14651 431 aaPredicted RBP10.69□□□□□ -0.7
CHD1-203ENST00000505657 VGFO15240 615 aaPredicted RBP10.64□□□□□ -0.71
CHD1-203ENST00000505657 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.63□□□□□ -0.71
CHD1-203ENST00000505657 ZFP91Q96JP5 570 aaPredicted RBP10.63□□□□□ -0.71
CHD1-203ENST00000505657 HOXB1P14653 301 aaPredicted RBP10.61□□□□□ -0.71
CHD1-203ENST00000505657 ZNF710Q8N1W2 664 aa10.61□□□□□ -0.71
CHD1-203ENST00000505657 EFCAB3Q8N7B9 438 aa10.61□□□□□ -0.71
CHD1-203ENST00000505657 CHGAP10645 457 aaKnown RBP10.6□□□□□ -0.71
CHD1-203ENST00000505657 HS6ST3Q8IZP7 471 aa10.58□□□□□ -0.72
CHD1-203ENST00000505657 ERBB3P21860 1342 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms