RNA–Protein interactions for RNA: ENST00000496549.5

CRNKL1-205, Transcript of crooked neck pre-mRNA splicing factor 1, human

TSL 1 (best)

Gene CRNKL1, Length 4,093 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNKL1-205	ENST00000496549	LAS1L	Q9Y4W2	734 aa	Known RBP	11.07	□□□□□ -0.64
CRNKL1-205	ENST00000496549	ZMYND15	Q9H091	742 aa		11.06	□□□□□ -0.64
CRNKL1-205	ENST00000496549	DDRGK1	Q96HY6	314 aa		11.01	□□□□□ -0.65
CRNKL1-205	ENST00000496549	PDE4C	Q08493	712 aa		10.99	□□□□□ -0.65
CRNKL1-205	ENST00000496549	GSE1	Q14687	1217 aa		10.99	□□□□□ -0.65
CRNKL1-205	ENST00000496549	B4GALNT3	Q6L9W6	998 aa		10.99	□□□□□ -0.65
CRNKL1-205	ENST00000496549	NCL	P19338	710 aa	Known RBP	10.98	□□□□□ -0.65
CRNKL1-205	ENST00000496549	CCER2	I3L3R5	266 aa		10.98	□□□□□ -0.65
CRNKL1-205	ENST00000496549	PNN	Q9H307	717 aa	Known RBP	10.98	□□□□□ -0.65
CRNKL1-205	ENST00000496549	BRPF3	Q9ULD4	1205 aa		10.97	□□□□□ -0.65
CRNKL1-205	ENST00000496549	PAK3	O75914	559 aa	Predicted RBP	10.96	□□□□□ -0.65
CRNKL1-205	ENST00000496549	FAM43A	Q8N2R8	423 aa		10.95	□□□□□ -0.66
CRNKL1-205	ENST00000496549	TNNT2	P45379	298 aa	Predicted RBP	10.94	□□□□□ -0.66
CRNKL1-205	ENST00000496549	RRP9	O43818	475 aa	Known RBP	10.94	□□□□□ -0.66
CRNKL1-205	ENST00000496549	KCNH8	Q96L42	1107 aa		10.93	□□□□□ -0.66
CRNKL1-205	ENST00000496549	C11orf95	C9JLR9	678 aa	Predicted RBP	10.92	□□□□□ -0.66
CRNKL1-205	ENST00000496549	CECR2	Q9BXF3	1484 aa		10.91	□□□□□ -0.66
CRNKL1-205	ENST00000496549	L1TD1	Q5T7N2	865 aa	Known RBP	10.91	□□□□□ -0.66
CRNKL1-205	ENST00000496549	EIF4G1	Q04637	1599 aa	Known RBP	10.89	□□□□□ -0.67
CRNKL1-205	ENST00000496549	CC2D2A	Q9P2K1	1620 aa		10.88	□□□□□ -0.67
CRNKL1-205	ENST00000496549	ZNF326	Q5BKZ1	582 aa	Known RBP	10.86	□□□□□ -0.67
CRNKL1-205	ENST00000496549	PDIA4	P13667	645 aa	Known RBP	10.84	□□□□□ -0.67
CRNKL1-205	ENST00000496549	TRIM44	Q96DX7	344 aa	Predicted RBP	10.84	□□□□□ -0.67
CRNKL1-205	ENST00000496549	ARX	Q96QS3	562 aa		10.84	□□□□□ -0.67
CRNKL1-205	ENST00000496549	EEA1	Q15075	1411 aa		10.83	□□□□□ -0.68
CRNKL1-205	ENST00000496549	RBM10	P98175	930 aa	Known RBP	10.83	□□□□□ -0.68
CRNKL1-205	ENST00000496549	CEP162	Q5TB80	1403 aa		10.83	□□□□□ -0.68
CRNKL1-205	ENST00000496549	CDK11B	P21127	795 aa	Known RBP	10.82	□□□□□ -0.68
CRNKL1-205	ENST00000496549	CNGB1	Q14028	1251 aa	Predicted RBP	10.81	□□□□□ -0.68
CRNKL1-205	ENST00000496549	ANP32B	Q92688	251 aa	Known RBP	10.81	□□□□□ -0.68
CRNKL1-205	ENST00000496549	FAM9B	Q8IZU0	186 aa		10.8	□□□□□ -0.68
CRNKL1-205	ENST00000496549	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.8	□□□□□ -0.68
CRNKL1-205	ENST00000496549	WASHC2A	Q641Q2	1341 aa		10.8	□□□□□ -0.68
CRNKL1-205	ENST00000496549	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.8	□□□□□ -0.68
CRNKL1-205	ENST00000496549	FRAT1	Q92837	279 aa	Predicted RBP	10.79	□□□□□ -0.68
CRNKL1-205	ENST00000496549	WASHC2C	Q9Y4E1	1318 aa		10.78	□□□□□ -0.68
CRNKL1-205	ENST00000496549	TCERG1	O14776	1098 aa	Known RBP	10.78	□□□□□ -0.68
CRNKL1-205	ENST00000496549	FGD1	P98174	961 aa		10.76	□□□□□ -0.69
CRNKL1-205	ENST00000496549	NFKBIB	Q15653	356 aa		10.75	□□□□□ -0.69
CRNKL1-205	ENST00000496549	CANX	P27824	592 aa	Known RBP	10.75	□□□□□ -0.69
CRNKL1-205	ENST00000496549	MRS2	Q9HD23	443 aa		10.74	□□□□□ -0.69
CRNKL1-205	ENST00000496549	TAF7L	Q5H9L4	462 aa		10.71	□□□□□ -0.69
CRNKL1-205	ENST00000496549	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.71	□□□□□ -0.69
CRNKL1-205	ENST00000496549	TNIK	Q9UKE5	1360 aa		10.71	□□□□□ -0.69
CRNKL1-205	ENST00000496549	AAMP	Q13685	434 aa		10.71	□□□□□ -0.69
CRNKL1-205	ENST00000496549	BECN1	Q14457	450 aa		10.71	□□□□□ -0.69
CRNKL1-205	ENST00000496549	TPM2	P07951	284 aa		10.7	□□□□□ -0.7
CRNKL1-205	ENST00000496549	MAP7D2	Q96T17	732 aa		10.7	□□□□□ -0.7
CRNKL1-205	ENST00000496549	GOLGA6L3	A6NEY3	463 aa		10.69	□□□□□ -0.7
CRNKL1-205	ENST00000496549	MROH2B	Q7Z745	1585 aa		10.69	□□□□□ -0.7
CRNKL1-205	ENST00000496549	PDCL3	Q9H2J4	239 aa		10.69	□□□□□ -0.7
CRNKL1-205	ENST00000496549	PDE4A	P27815	886 aa		10.68	□□□□□ -0.7
CRNKL1-205	ENST00000496549	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.68	□□□□□ -0.7
CRNKL1-205	ENST00000496549	DHX57	Q6P158	1386 aa	Known RBP	10.67	□□□□□ -0.7
CRNKL1-205	ENST00000496549	TONSL	Q96HA7	1378 aa		10.66	□□□□□ -0.7
CRNKL1-205	ENST00000496549	ATAD2B	Q9ULI0	1458 aa		10.66	□□□□□ -0.7
CRNKL1-205	ENST00000496549	BBX	Q8WY36	941 aa	Predicted RBP	10.65	□□□□□ -0.7
CRNKL1-205	ENST00000496549	MS4A1	P11836	297 aa		10.64	□□□□□ -0.71
CRNKL1-205	ENST00000496549	UPF2	Q9HAU5	1272 aa	Known RBP	10.64	□□□□□ -0.71
CRNKL1-205	ENST00000496549	CALD1	Q05682	793 aa	Known RBP	10.64	□□□□□ -0.71
CRNKL1-205	ENST00000496549	MYH16	Q9H6N6	1097 aa		10.64	□□□□□ -0.71
CRNKL1-205	ENST00000496549	SMARCA4	P51532	1647 aa		10.64	□□□□□ -0.71
CRNKL1-205	ENST00000496549	MSN	P26038	577 aa	Known RBP	10.63	□□□□□ -0.71
CRNKL1-205	ENST00000496549	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	10.63	□□□□□ -0.71
CRNKL1-205	ENST00000496549	BAZ1B	Q9UIG0	1483 aa	Known RBP	10.62	□□□□□ -0.71
CRNKL1-205	ENST00000496549	POLR3GL	Q9BT43	218 aa		10.62	□□□□□ -0.71
CRNKL1-205	ENST00000496549	MTERF4	Q7Z6M4	381 aa	Known RBP	10.62	□□□□□ -0.71
CRNKL1-205	ENST00000496549	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.61	□□□□□ -0.71
CRNKL1-205	ENST00000496549	RGS3	P49796	1198 aa		10.6	□□□□□ -0.71
CRNKL1-205	ENST00000496549	SIN3A	Q96ST3	1273 aa		10.59	□□□□□ -0.71
CRNKL1-205	ENST00000496549	ZBED9	Q6R2W3	1325 aa		10.59	□□□□□ -0.71
CRNKL1-205	ENST00000496549	ARID3A	Q99856	593 aa		10.59	□□□□□ -0.71
CRNKL1-205	ENST00000496549	PPP1R15A	O75807	674 aa	Predicted RBP	10.59	□□□□□ -0.71
CRNKL1-205	ENST00000496549	FAM13B	Q9NYF5	915 aa		10.58	□□□□□ -0.71
CRNKL1-205	ENST00000496549	CLCN1	P35523	988 aa		10.58	□□□□□ -0.72
CRNKL1-205	ENST00000496549	SLC4A3	P48751	1232 aa		10.58	□□□□□ -0.72
CRNKL1-205	ENST00000496549	FRAT2	O75474	233 aa	Predicted RBP	10.58	□□□□□ -0.72
CRNKL1-205	ENST00000496549	NAP1L2	Q9ULW6	460 aa	Predicted RBP	10.57	□□□□□ -0.72
CRNKL1-205	ENST00000496549	NUDC	Q9Y266	331 aa		10.57	□□□□□ -0.72
CRNKL1-205	ENST00000496549	CLIP1	P30622	1438 aa		10.57	□□□□□ -0.72
CRNKL1-205	ENST00000496549	NCAPD3	P42695	1498 aa		10.57	□□□□□ -0.72
CRNKL1-205	ENST00000496549	NES	P48681	1621 aa		10.57	□□□□□ -0.72
CRNKL1-205	ENST00000496549	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.57	□□□□□ -0.72
CRNKL1-205	ENST00000496549	WIZ	O95785	1651 aa		10.56	□□□□□ -0.72
CRNKL1-205	ENST00000496549	FAM50A	Q14320	339 aa	Known RBP	10.56	□□□□□ -0.72
CRNKL1-205	ENST00000496549	GOLGA3	Q08378	1498 aa		10.56	□□□□□ -0.72
CRNKL1-205	ENST00000496549	RSF1	Q96T23	1441 aa	Predicted RBP	10.56	□□□□□ -0.72
CRNKL1-205	ENST00000496549	SMARCA2	P51531	1590 aa		10.55	□□□□□ -0.72
CRNKL1-205	ENST00000496549	ERCC6	Q03468	1493 aa		10.55	□□□□□ -0.72
CRNKL1-205	ENST00000496549	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.55	□□□□□ -0.72
CRNKL1-205	ENST00000496549	BACH2	Q9BYV9	841 aa		10.54	□□□□□ -0.72
CRNKL1-205	ENST00000496549	GZF1	Q9H116	711 aa	Predicted RBP	10.54	□□□□□ -0.72
CRNKL1-205	ENST00000496549	RRAGD	Q9NQL2	400 aa	Predicted RBP	10.53	□□□□□ -0.72
CRNKL1-205	ENST00000496549	ESPN	B1AK53	854 aa		10.52	□□□□□ -0.72
CRNKL1-205	ENST00000496549	MRE11	P49959	708 aa		10.52	□□□□□ -0.73
CRNKL1-205	ENST00000496549	TMC1	Q8TDI8	760 aa		10.51	□□□□□ -0.73
CRNKL1-205	ENST00000496549	SLK	Q9H2G2	1235 aa	Predicted RBP	10.51	□□□□□ -0.73
CRNKL1-205	ENST00000496549	KIAA1211	Q6ZU35	1233 aa		10.51	□□□□□ -0.73
CRNKL1-205	ENST00000496549	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.51	□□□□□ -0.73
CRNKL1-205	ENST00000496549	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.5	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms