RNA–Protein interactions for RNA: ENST00000493758.5

ITGB1-216, Transcript of integrin subunit beta 1, humanhuman

TSL 3

Gene ITGB1, Length 366 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-216ENST00000493758 CLCN6P51797 869 aa12.58□□□□□ -0.4
ITGB1-216ENST00000493758 AMER1Q5JTC6 1135 aaPredicted RBP12.58□□□□□ -0.4
ITGB1-216ENST00000493758 TSPYL2Q9H2G4 693 aaPredicted RBP12.58□□□□□ -0.4
ITGB1-216ENST00000493758 CHRM1P11229 460 aaPredicted RBP12.56□□□□□ -0.4
ITGB1-216ENST00000493758 EVX2Q03828 476 aa12.56□□□□□ -0.4
ITGB1-216ENST00000493758 DCAF8Q5TAQ9 597 aa12.55□□□□□ -0.4
ITGB1-216ENST00000493758 PKD2Q13563 968 aa12.54□□□□□ -0.4
ITGB1-216ENST00000493758 CIZ1Q9ULV3 898 aaPredicted RBP12.52□□□□□ -0.41
ITGB1-216ENST00000493758 SGIP1Q9BQI5 828 aa12.51□□□□□ -0.41
ITGB1-216ENST00000493758 SP7Q8TDD2 431 aaPredicted RBP12.48□□□□□ -0.41
ITGB1-216ENST00000493758 KIF12Q96FN5 646 aa12.48□□□□□ -0.41
ITGB1-216ENST00000493758 PHF12Q96QT6 1004 aa12.47□□□□□ -0.41
ITGB1-216ENST00000493758 RTN4Q9NQC3 1192 aaKnown RBP12.45□□□□□ -0.42
ITGB1-216ENST00000493758 PYGBP11216 843 aa12.42□□□□□ -0.42
ITGB1-216ENST00000493758 MAP3K13O43283 966 aa12.4□□□□□ -0.42
ITGB1-216ENST00000493758 ECM2O94769 699 aaPredicted RBP12.4□□□□□ -0.42
ITGB1-216ENST00000493758 ZNF467Q7Z7K2 595 aaPredicted RBP12.39□□□□□ -0.43
ITGB1-216ENST00000493758 GABBR2O75899 941 aa12.37□□□□□ -0.43
ITGB1-216ENST00000493758 PCDHB13Q9Y5F0 798 aa12.37□□□□□ -0.43
ITGB1-216ENST00000493758 RNF25Q96BH1 459 aaPredicted RBP12.36□□□□□ -0.43
ITGB1-216ENST00000493758 MS4A3Q96HJ5 214 aa12.36□□□□□ -0.43
ITGB1-216ENST00000493758 IFNL1Q8IU54 200 aa12.34□□□□□ -0.43
ITGB1-216ENST00000493758 GALR2O43603 387 aaPredicted RBP12.33□□□□□ -0.44
ITGB1-216ENST00000493758 RIOK3O14730 519 aaKnown RBP12.32□□□□□ -0.44
ITGB1-216ENST00000493758 RGL2O15211 777 aa12.3□□□□□ -0.44
ITGB1-216ENST00000493758 TAOK2Q9UL54 1235 aa12.28□□□□□ -0.44
ITGB1-216ENST00000493758 TIE1P35590 1138 aa12.27□□□□□ -0.45
ITGB1-216ENST00000493758 VGFO15240 615 aaPredicted RBP12.26□□□□□ -0.45
ITGB1-216ENST00000493758 PCDHB8Q9UN66 801 aa12.26□□□□□ -0.45
ITGB1-216ENST00000493758 PDAP1Q13442 181 aaKnown RBP12.25□□□□□ -0.45
ITGB1-216ENST00000493758 ASTLQ6HA08 431 aaPredicted RBP12.21□□□□□ -0.45
ITGB1-216ENST00000493758 TRPC6Q9Y210 931 aa12.21□□□□□ -0.45
ITGB1-216ENST00000493758 PSEN1P49768 467 aa12.19□□□□□ -0.46
ITGB1-216ENST00000493758 BMP2KQ9NSY1 1161 aaPredicted RBP12.19□□□□□ -0.46
ITGB1-216ENST00000493758 TTLL13PA6NNM8 815 aa12.17□□□□□ -0.46
ITGB1-216ENST00000493758 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.15□□□□□ -0.46
ITGB1-216ENST00000493758 ATMINO43313 823 aaPredicted RBP12.15□□□□□ -0.46
ITGB1-216ENST00000493758 ZFP91Q96JP5 570 aaPredicted RBP12.15□□□□□ -0.46
ITGB1-216ENST00000493758 DCBLD2Q96PD2 775 aa12.15□□□□□ -0.46
ITGB1-216ENST00000493758 HS6ST3Q8IZP7 471 aa12.14□□□□□ -0.47
ITGB1-216ENST00000493758 TMEM106CQ9BVX2 250 aa12.14□□□□□ -0.47
ITGB1-216ENST00000493758 DNAJC5Q9H3Z4 198 aa12.13□□□□□ -0.47
ITGB1-216ENST00000493758 POTEIP0CG38 1075 aa12.12□□□□□ -0.47
ITGB1-216ENST00000493758 ATN1P54259 1190 aaPredicted RBP12.08□□□□□ -0.48
ITGB1-216ENST00000493758 STK25O00506 426 aa12.07□□□□□ -0.48
ITGB1-216ENST00000493758 IER5LQ5T953 404 aa12.07□□□□□ -0.48
ITGB1-216ENST00000493758 BCL11BQ9C0K0 894 aaPredicted RBP12.07□□□□□ -0.48
ITGB1-216ENST00000493758 TRIM35Q9UPQ4 493 aa12.07□□□□□ -0.48
ITGB1-216ENST00000493758 CHGAP10645 457 aaKnown RBP12.02□□□□□ -0.49
ITGB1-216ENST00000493758 ILDR1Q86SU0 546 aaPredicted RBP12.02□□□□□ -0.49
ITGB1-216ENST00000493758 PELP1Q8IZL8 1130 aaKnown RBP12.02□□□□□ -0.49
ITGB1-216ENST00000493758 SLC39A7Q92504 469 aa12.02□□□□□ -0.49
ITGB1-216ENST00000493758 STK24Q9Y6E0 443 aa12.02□□□□□ -0.49
ITGB1-216ENST00000493758 CABP2Q9NPB3 220 aa12.01□□□□□ -0.49
ITGB1-216ENST00000493758 C7P10643 843 aa11.99□□□□□ -0.49
ITGB1-216ENST00000493758 DCAF8L2P0C7V8 631 aa11.98□□□□□ -0.49
ITGB1-216ENST00000493758 GOLGA2Q08379 1002 aa11.97□□□□□ -0.49
ITGB1-216ENST00000493758 SOX12O15370 315 aa11.96□□□□□ -0.49
ITGB1-216ENST00000493758 IRX5P78411 483 aaPredicted RBP11.95□□□□□ -0.5
ITGB1-216ENST00000493758 MKRN3Q13064 507 aaKnown RBP11.95□□□□□ -0.5
ITGB1-216ENST00000493758 EFCAB3Q8N7B9 438 aa11.95□□□□□ -0.5
ITGB1-216ENST00000493758 METRNQ9UJH8 293 aa11.95□□□□□ -0.5
ITGB1-216ENST00000493758 BBXQ8WY36 941 aaPredicted RBP11.91□□□□□ -0.5
ITGB1-216ENST00000493758 NKX1-1Q15270 411 aaPredicted RBP11.9□□□□□ -0.5
ITGB1-216ENST00000493758 MFRPQ9BY79 579 aa11.9□□□□□ -0.5
ITGB1-216ENST00000493758 PDCD7Q8N8D1 485 aaKnown RBP11.89□□□□□ -0.51
ITGB1-216ENST00000493758 FBXO22Q8NEZ5 403 aa11.89□□□□□ -0.51
ITGB1-216ENST00000493758 OCEL1Q9H607 264 aa11.89□□□□□ -0.51
ITGB1-216ENST00000493758 RYDENQ9NUL5 291 aaKnown RBP11.89□□□□□ -0.51
ITGB1-216ENST00000493758 POTEFA5A3E0 1075 aa11.87□□□□□ -0.51
ITGB1-216ENST00000493758 NLRP6P59044 892 aa11.87□□□□□ -0.51
ITGB1-216ENST00000493758 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.86□□□□□ -0.514e-16■□□□□ 11.1
ITGB1-216ENST00000493758 PLCG2P16885 1265 aa11.85□□□□□ -0.51
ITGB1-216ENST00000493758 COLQQ9Y215 455 aaPredicted RBP11.85□□□□□ -0.51
ITGB1-216ENST00000493758 PHF8Q9UPP1 1060 aa11.84□□□□□ -0.51
ITGB1-216ENST00000493758 SEC24BO95487 1268 aa11.83□□□□□ -0.52
ITGB1-216ENST00000493758 MS4A4AQ96JQ5 239 aa11.83□□□□□ -0.52
ITGB1-216ENST00000493758 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.8□□□□□ -0.52
ITGB1-216ENST00000493758 GTPBP6O43824 516 aaPredicted RBP11.79□□□□□ -0.52
ITGB1-216ENST00000493758 L3MBTL3Q96JM7 780 aaPredicted RBP11.74□□□□□ -0.53
ITGB1-216ENST00000493758 TMEM121BQ9BXQ6 578 aaPredicted RBP11.74□□□□□ -0.53
ITGB1-216ENST00000493758 POTEB2H3BUK9 544 aa11.71□□□□□ -0.53
ITGB1-216ENST00000493758 DPY19L2Q6NUT2 758 aa11.7□□□□□ -0.54
ITGB1-216ENST00000493758 SPRYD3Q8NCJ5 442 aa11.7□□□□□ -0.54
ITGB1-216ENST00000493758 BOLA1Q9Y3E2 137 aa11.7□□□□□ -0.54
ITGB1-216ENST00000493758 POTEJP0CG39 1038 aa11.68□□□□□ -0.54
ITGB1-216ENST00000493758 MICALL2Q8IY33 904 aa11.68□□□□□ -0.54
ITGB1-216ENST00000493758 MAMSTRQ6ZN01 415 aa11.67□□□□□ -0.54
ITGB1-216ENST00000493758 PPP1R37O75864 691 aa11.66□□□□□ -0.54
ITGB1-216ENST00000493758 PLCB2Q00722 1185 aa11.66□□□□□ -0.54
ITGB1-216ENST00000493758 LHX8Q68G74 356 aa11.66□□□□□ -0.54
ITGB1-216ENST00000493758 PAXIP1Q6ZW49 1069 aaPredicted RBP11.63□□□□□ -0.55
ITGB1-216ENST00000493758 G3V3G9 751 aa11.62□□□□□ -0.55
ITGB1-216ENST00000493758 SCUBE2Q9NQ36 999 aa11.6□□□□□ -0.55
ITGB1-216ENST00000493758 C3orf67Q6ZVT6 689 aa11.59□□□□□ -0.55
ITGB1-216ENST00000493758 CFAP44Q96MT7 982 aa11.58□□□□□ -0.56
ITGB1-216ENST00000493758 OTUD5Q96G74 571 aa11.56□□□□□ -0.56
ITGB1-216ENST00000493758 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.56□□□□□ -0.56
ITGB1-216ENST00000493758 KIF3CO14782 793 aa11.52□□□□□ -0.57
ITGB1-216ENST00000493758 CRISPLD2Q9H0B8 497 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms