RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 DCAF8Q5TAQ9 597 aa14.29□□□□□ -0.12
USP48-209ENST00000487880 RGL2O15211 777 aa14.23□□□□□ -0.13
USP48-209ENST00000487880 CHRM1P11229 460 aaPredicted RBP14.19□□□□□ -0.14
USP48-209ENST00000487880 TSPYL2Q9H2G4 693 aaPredicted RBP14.17□□□□□ -0.14
USP48-209ENST00000487880 RNF25Q96BH1 459 aaPredicted RBP14.16□□□□□ -0.14
USP48-209ENST00000487880 CCDC61Q9Y6R9 512 aa14.13□□□□□ -0.15
USP48-209ENST00000487880 DCAF8L2P0C7V8 631 aa14.12□□□□□ -0.15
USP48-209ENST00000487880 EVX2Q03828 476 aa14.11□□□□□ -0.15
USP48-209ENST00000487880 PYGBP11216 843 aa14.1□□□□□ -0.15
USP48-209ENST00000487880 PAK3O75914 559 aaPredicted RBP14.08□□□□□ -0.16
USP48-209ENST00000487880 RIOK3O14730 519 aaKnown RBP14.07□□□□□ -0.16
USP48-209ENST00000487880 CD44P16070 742 aaKnown RBP14.07□□□□□ -0.16
USP48-209ENST00000487880 C19orf67A6NJJ6 358 aa14.06□□□□□ -0.16
USP48-209ENST00000487880 ZRANB1Q9UGI0 708 aa14.01□□□□□ -0.17
USP48-209ENST00000487880 VGFO15240 615 aaPredicted RBP13.97□□□□□ -0.17
USP48-209ENST00000487880 KIF12Q96FN5 646 aa13.97□□□□□ -0.17
USP48-209ENST00000487880 HS6ST3Q8IZP7 471 aa13.96□□□□□ -0.17
USP48-209ENST00000487880 TAOK2Q9UL54 1235 aa13.96□□□□□ -0.17
USP48-209ENST00000487880 ZNF467Q7Z7K2 595 aaPredicted RBP13.95□□□□□ -0.18
USP48-209ENST00000487880 ZNF579Q8NAF0 562 aaKnown RBP13.95□□□□□ -0.18
USP48-209ENST00000487880 SGIP1Q9BQI5 828 aa13.95□□□□□ -0.18
USP48-209ENST00000487880 CHGAP10645 457 aaKnown RBP13.94□□□□□ -0.18
USP48-209ENST00000487880 PHF12Q96QT6 1004 aa13.93□□□□□ -0.18
USP48-209ENST00000487880 MAP3K13O43283 966 aa13.92□□□□□ -0.18
USP48-209ENST00000487880 BBXQ8WY36 941 aaPredicted RBP13.91□□□□□ -0.18
USP48-209ENST00000487880 PCDHB8Q9UN66 801 aa13.9□□□□□ -0.18
USP48-209ENST00000487880 PCDHB13Q9Y5F0 798 aa13.9□□□□□ -0.18
USP48-209ENST00000487880 DNAJC5Q9H3Z4 198 aa13.89□□□□□ -0.19
USP48-209ENST00000487880 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.88□□□□□ -0.19
USP48-209ENST00000487880 IFNL1Q8IU54 200 aa13.88□□□□□ -0.19
USP48-209ENST00000487880 ZFP91Q96JP5 570 aaPredicted RBP13.88□□□□□ -0.19
USP48-209ENST00000487880 PDAP1Q13442 181 aaKnown RBP13.85□□□□□ -0.19
USP48-209ENST00000487880 STK25O00506 426 aa13.84□□□□□ -0.19
USP48-209ENST00000487880 PLCB2Q00722 1185 aa13.84□□□□□ -0.19
USP48-209ENST00000487880 GABBR2O75899 941 aa13.83□□□□□ -0.2
USP48-209ENST00000487880 SLC24A1O60721 1099 aa13.82□□□□□ -0.2
USP48-209ENST00000487880 BCL11BQ9C0K0 894 aaPredicted RBP13.81□□□□□ -0.2
USP48-209ENST00000487880 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.8□□□□□ -0.2
USP48-209ENST00000487880 PSEN1P49768 467 aa13.79□□□□□ -0.2
USP48-209ENST00000487880 MS4A3Q96HJ5 214 aa13.78□□□□□ -0.2
USP48-209ENST00000487880 STK24Q9Y6E0 443 aa13.77□□□□□ -0.21
USP48-209ENST00000487880 NKX1-1Q15270 411 aaPredicted RBP13.76□□□□□ -0.21
USP48-209ENST00000487880 CLCN6P51797 869 aa13.72□□□□□ -0.21
USP48-209ENST00000487880 PAXIP1Q6ZW49 1069 aaPredicted RBP13.7□□□□□ -0.22
USP48-209ENST00000487880 TRPC6Q9Y210 931 aa13.7□□□□□ -0.22
USP48-209ENST00000487880 SPRYD3Q8NCJ5 442 aa13.68□□□□□ -0.22
USP48-209ENST00000487880 GALR2O43603 387 aaPredicted RBP13.67□□□□□ -0.22
USP48-209ENST00000487880 GTPBP6O43824 516 aaPredicted RBP13.64□□□□□ -0.23
USP48-209ENST00000487880 CFAP44Q96MT7 982 aa13.64□□□□□ -0.23
USP48-209ENST00000487880 TIE1P35590 1138 aa13.63□□□□□ -0.23
USP48-209ENST00000487880 TMEM106CQ9BVX2 250 aa13.63□□□□□ -0.23
USP48-209ENST00000487880 CABP2Q9NPB3 220 aa13.6□□□□□ -0.23
USP48-209ENST00000487880 BMP2KQ9NSY1 1161 aaPredicted RBP13.59□□□□□ -0.23
USP48-209ENST00000487880 TTLL13PA6NNM8 815 aa13.58□□□□□ -0.24
USP48-209ENST00000487880 EFCAB3Q8N7B9 438 aa13.57□□□□□ -0.24
USP48-209ENST00000487880 RYDENQ9NUL5 291 aaKnown RBP13.57□□□□□ -0.24
USP48-209ENST00000487880 HAP1P54257 671 aaPredicted RBP13.56□□□□□ -0.24
USP48-209ENST00000487880 MFRPQ9BY79 579 aa13.56□□□□□ -0.24
USP48-209ENST00000487880 SOX12O15370 315 aa13.53□□□□□ -0.24
USP48-209ENST00000487880 POTEIP0CG38 1075 aa13.51□□□□□ -0.25
USP48-209ENST00000487880 FBXO22Q8NEZ5 403 aa13.51□□□□□ -0.25
USP48-209ENST00000487880 LHX8Q68G74 356 aa13.5□□□□□ -0.25
USP48-209ENST00000487880 ASTLQ6HA08 431 aaPredicted RBP13.5□□□□□ -0.25
USP48-209ENST00000487880 DCBLD2Q96PD2 775 aa13.5□□□□□ -0.25
USP48-209ENST00000487880 TSHZ2Q9NRE2 1034 aa13.48□□□□□ -0.25
USP48-209ENST00000487880 ATMINO43313 823 aaPredicted RBP13.47□□□□□ -0.25
USP48-209ENST00000487880 NLRP6P59044 892 aa13.47□□□□□ -0.25
USP48-209ENST00000487880 GOLGA2Q08379 1002 aa13.47□□□□□ -0.25
USP48-209ENST00000487880 PHF8Q9UPP1 1060 aa13.47□□□□□ -0.25
USP48-209ENST00000487880 TRIM35Q9UPQ4 493 aa13.47□□□□□ -0.25
USP48-209ENST00000487880 ATN1P54259 1190 aaPredicted RBP13.46□□□□□ -0.25
USP48-209ENST00000487880 ILDR1Q86SU0 546 aaPredicted RBP13.45□□□□□ -0.26
USP48-209ENST00000487880 MKRN3Q13064 507 aaKnown RBP13.43□□□□□ -0.26
USP48-209ENST00000487880 VSIG10Q8N0Z9 540 aa13.42□□□□□ -0.26
USP48-209ENST00000487880 MS4A4AQ96JQ5 239 aa13.42□□□□□ -0.26
USP48-209ENST00000487880 KDM2AQ9Y2K7 1162 aa13.38□□□□□ -0.27
USP48-209ENST00000487880 PPP1R37O75864 691 aa13.37□□□□□ -0.27
USP48-209ENST00000487880 IER5LQ5T953 404 aa13.37□□□□□ -0.27
USP48-209ENST00000487880 PELP1Q8IZL8 1130 aaKnown RBP13.34□□□□□ -0.27
USP48-209ENST00000487880 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.34□□□□□ -0.272e-10■■■■□ 26.7
USP48-209ENST00000487880 IRX5P78411 483 aaPredicted RBP13.33□□□□□ -0.28
USP48-209ENST00000487880 PDCD7Q8N8D1 485 aaKnown RBP13.32□□□□□ -0.28
USP48-209ENST00000487880 CADPS2Q86UW7 1296 aa13.27□□□□□ -0.29
USP48-209ENST00000487880 OCEL1Q9H607 264 aa13.27□□□□□ -0.29
USP48-209ENST00000487880 SLC39A7Q92504 469 aa13.24□□□□□ -0.29
USP48-209ENST00000487880 DPY19L2Q6NUT2 758 aa13.23□□□□□ -0.29
USP48-209ENST00000487880 C7P10643 843 aa13.22□□□□□ -0.29
USP48-209ENST00000487880 COLQQ9Y215 455 aaPredicted RBP13.21□□□□□ -0.29
USP48-209ENST00000487880 PLCG2P16885 1265 aa13.2□□□□□ -0.3
USP48-209ENST00000487880 POTEFA5A3E0 1075 aa13.19□□□□□ -0.3
USP48-209ENST00000487880 METRNQ9UJH8 293 aa13.18□□□□□ -0.3
USP48-209ENST00000487880 SEC24BO95487 1268 aa13.15□□□□□ -0.3
USP48-209ENST00000487880 MICALL2Q8IY33 904 aa13.15□□□□□ -0.3
USP48-209ENST00000487880 TMEM121BQ9BXQ6 578 aaPredicted RBP13.15□□□□□ -0.3
USP48-209ENST00000487880 NCKAP5LQ9HCH0 1330 aa13.13□□□□□ -0.31
USP48-209ENST00000487880 CRISPLD2Q9H0B8 497 aa13.12□□□□□ -0.31
USP48-209ENST00000487880 BOLA1Q9Y3E2 137 aa13.12□□□□□ -0.31
USP48-209ENST00000487880 L3MBTL3Q96JM7 780 aaPredicted RBP13.09□□□□□ -0.31
USP48-209ENST00000487880 POTEB2H3BUK9 544 aa13.07□□□□□ -0.32
USP48-209ENST00000487880 MFSD10Q14728 455 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms