RNA–Protein interactions for RNA: ENST00000487825.5

BRCA1-217, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 800 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-217ENST00000487825 CCDC61Q9Y6R9 512 aa13.61□□□□□ -0.23
BRCA1-217ENST00000487825 CLCN6P51797 869 aa13.58□□□□□ -0.24
BRCA1-217ENST00000487825 FAM212AQ96EL1 285 aa13.58□□□□□ -0.24
BRCA1-217ENST00000487825 GALR2O43603 387 aaPredicted RBP13.56□□□□□ -0.24
BRCA1-217ENST00000487825 DCAF8Q5TAQ9 597 aa13.56□□□□□ -0.24
BRCA1-217ENST00000487825 SPOCK2Q92563 424 aa13.53□□□□□ -0.24
BRCA1-217ENST00000487825 KIF12Q96FN5 646 aa13.51□□□□□ -0.25
BRCA1-217ENST00000487825 MS4A3Q96HJ5 214 aa13.5□□□□□ -0.25
BRCA1-217ENST00000487825 MAP3K13O43283 966 aa13.48□□□□□ -0.25
BRCA1-217ENST00000487825 DCBLD2Q96PD2 775 aa13.48□□□□□ -0.25
BRCA1-217ENST00000487825 POTEIP0CG38 1075 aa13.44□□□□□ -0.26
BRCA1-217ENST00000487825 PYGBP11216 843 aa13.43□□□□□ -0.26
BRCA1-217ENST00000487825 GSE1Q14687 1217 aa13.43□□□□□ -0.26
BRCA1-217ENST00000487825 CIZ1Q9ULV3 898 aaPredicted RBP13.42□□□□□ -0.26
BRCA1-217ENST00000487825 PCDHB13Q9Y5F0 798 aa13.4□□□□□ -0.26
BRCA1-217ENST00000487825 TRPC6Q9Y210 931 aa13.36□□□□□ -0.27
BRCA1-217ENST00000487825 IFNL1Q8IU54 200 aa13.34□□□□□ -0.27
BRCA1-217ENST00000487825 SGIP1Q9BQI5 828 aa13.33□□□□□ -0.28
BRCA1-217ENST00000487825 ATMINO43313 823 aaPredicted RBP13.28□□□□□ -0.28
BRCA1-217ENST00000487825 PCDHB8Q9UN66 801 aa13.28□□□□□ -0.28
BRCA1-217ENST00000487825 ASTLQ6HA08 431 aaPredicted RBP13.27□□□□□ -0.29
BRCA1-217ENST00000487825 PELP1Q8IZL8 1130 aaKnown RBP13.27□□□□□ -0.29
BRCA1-217ENST00000487825 BMP2KQ9NSY1 1161 aaPredicted RBP13.26□□□□□ -0.29
BRCA1-217ENST00000487825 CHRM1P11229 460 aaPredicted RBP13.25□□□□□ -0.29
BRCA1-217ENST00000487825 TIE1P35590 1138 aa13.24□□□□□ -0.29
BRCA1-217ENST00000487825 ATN1P54259 1190 aaPredicted RBP13.24□□□□□ -0.29
BRCA1-217ENST00000487825 TTLL13PA6NNM8 815 aa13.21□□□□□ -0.29
BRCA1-217ENST00000487825 ZNF467Q7Z7K2 595 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-217ENST00000487825 TMEM106CQ9BVX2 250 aa13.19□□□□□ -0.3
BRCA1-217ENST00000487825 TRIM41Q8WV44 630 aa13.16□□□□□ -0.3
BRCA1-217ENST00000487825 LHX8Q68G74 356 aa13.13□□□□□ -0.31
BRCA1-217ENST00000487825 SLC39A7Q92504 469 aa13.13□□□□□ -0.31
BRCA1-217ENST00000487825 METRNQ9UJH8 293 aa13.13□□□□□ -0.31
BRCA1-217ENST00000487825 TRIM35Q9UPQ4 493 aa13.13□□□□□ -0.31
BRCA1-217ENST00000487825 C7P10643 843 aa13.11□□□□□ -0.31
BRCA1-217ENST00000487825 PSEN1P49768 467 aa13.1□□□□□ -0.31
BRCA1-217ENST00000487825 PDAP1Q13442 181 aaKnown RBP13.06□□□□□ -0.32
BRCA1-217ENST00000487825 PKD2Q13563 968 aa13.06□□□□□ -0.32
BRCA1-217ENST00000487825 ECM2O94769 699 aaPredicted RBP13.05□□□□□ -0.32
BRCA1-217ENST00000487825 RNF25Q96BH1 459 aaPredicted RBP13.05□□□□□ -0.32
BRCA1-217ENST00000487825 POTEB2H3BUK9 544 aa13.03□□□□□ -0.32
BRCA1-217ENST00000487825 RIOK3O14730 519 aaKnown RBP13.02□□□□□ -0.33
BRCA1-217ENST00000487825 SEC24BO95487 1268 aa13.01□□□□□ -0.33
BRCA1-217ENST00000487825 POTEFA5A3E0 1075 aa13□□□□□ -0.33
BRCA1-217ENST00000487825 IER5LQ5T953 404 aa13□□□□□ -0.33
BRCA1-217ENST00000487825 COLQQ9Y215 455 aaPredicted RBP13□□□□□ -0.33
BRCA1-217ENST00000487825 GOLGA2Q08379 1002 aa12.99□□□□□ -0.33
BRCA1-217ENST00000487825 CABP2Q9NPB3 220 aa12.95□□□□□ -0.34
BRCA1-217ENST00000487825 RGL2O15211 777 aa12.94□□□□□ -0.34
BRCA1-217ENST00000487825 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.93□□□□□ -0.34
BRCA1-217ENST00000487825 VGFO15240 615 aaPredicted RBP12.93□□□□□ -0.34
BRCA1-217ENST00000487825 MKRN3Q13064 507 aaKnown RBP12.93□□□□□ -0.34
BRCA1-217ENST00000487825 ZFP91Q96JP5 570 aaPredicted RBP12.93□□□□□ -0.34
BRCA1-217ENST00000487825 IRX5P78411 483 aaPredicted RBP12.92□□□□□ -0.34
BRCA1-217ENST00000487825 POTEJP0CG39 1038 aa12.91□□□□□ -0.34
BRCA1-217ENST00000487825 PLCG2P16885 1265 aa12.91□□□□□ -0.34
BRCA1-217ENST00000487825 OCEL1Q9H607 264 aa12.89□□□□□ -0.35
BRCA1-217ENST00000487825 OTUD5Q96G74 571 aa12.87□□□□□ -0.35
BRCA1-217ENST00000487825 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.86□□□□□ -0.354e-6■■■■■ 27.4
BRCA1-217ENST00000487825 TAOK2Q9UL54 1235 aa12.86□□□□□ -0.35
BRCA1-217ENST00000487825 EFCAB3Q8N7B9 438 aa12.84□□□□□ -0.35
BRCA1-217ENST00000487825 BCL11BQ9C0K0 894 aaPredicted RBP12.82□□□□□ -0.36
BRCA1-217ENST00000487825 STK25O00506 426 aa12.81□□□□□ -0.36
BRCA1-217ENST00000487825 MAMSTRQ6ZN01 415 aa12.81□□□□□ -0.36
BRCA1-217ENST00000487825 STK24Q9Y6E0 443 aa12.81□□□□□ -0.36
BRCA1-217ENST00000487825 PDCD7Q8N8D1 485 aaKnown RBP12.8□□□□□ -0.36
BRCA1-217ENST00000487825 SCUBE2Q9NQ36 999 aa12.78□□□□□ -0.36
BRCA1-217ENST00000487825 DPY19L2Q6NUT2 758 aa12.76□□□□□ -0.37
BRCA1-217ENST00000487825 ILDR1Q86SU0 546 aaPredicted RBP12.74□□□□□ -0.37
BRCA1-217ENST00000487825 SOX12O15370 315 aa12.7□□□□□ -0.38
BRCA1-217ENST00000487825 PHF8Q9UPP1 1060 aa12.7□□□□□ -0.38
BRCA1-217ENST00000487825 L3MBTL3Q96JM7 780 aaPredicted RBP12.69□□□□□ -0.38
BRCA1-217ENST00000487825 CHGAP10645 457 aaKnown RBP12.67□□□□□ -0.38
BRCA1-217ENST00000487825 DCAF8L2P0C7V8 631 aa12.66□□□□□ -0.38
BRCA1-217ENST00000487825 SLAIN1Q8ND83 568 aa12.64□□□□□ -0.39
BRCA1-217ENST00000487825 MS4A4AQ96JQ5 239 aa12.64□□□□□ -0.39
BRCA1-217ENST00000487825 G3V3G9 751 aa12.63□□□□□ -0.39
BRCA1-217ENST00000487825 NLRP6P59044 892 aa12.63□□□□□ -0.39
BRCA1-217ENST00000487825 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.63□□□□□ -0.39
BRCA1-217ENST00000487825 C3orf67Q6ZVT6 689 aa12.62□□□□□ -0.39
BRCA1-217ENST00000487825 HS6ST3Q8IZP7 471 aa12.62□□□□□ -0.39
BRCA1-217ENST00000487825 MFRPQ9BY79 579 aa12.62□□□□□ -0.39
BRCA1-217ENST00000487825 BOLA1Q9Y3E2 137 aa12.62□□□□□ -0.39
BRCA1-217ENST00000487825 AMER1Q5JTC6 1135 aaPredicted RBP12.6□□□□□ -0.39
BRCA1-217ENST00000487825 FBXO22Q8NEZ5 403 aa12.6□□□□□ -0.39
BRCA1-217ENST00000487825 RTN4Q9NQC3 1192 aaKnown RBP12.6□□□□□ -0.39
BRCA1-217ENST00000487825 MICALL2Q8IY33 904 aa12.53□□□□□ -0.4
BRCA1-217ENST00000487825 TMEM121BQ9BXQ6 578 aaPredicted RBP12.52□□□□□ -0.41
BRCA1-217ENST00000487825 FAM163AQ96GL9 167 aaPredicted RBP12.51□□□□□ -0.41
BRCA1-217ENST00000487825 NKX1-1Q15270 411 aaPredicted RBP12.48□□□□□ -0.41
BRCA1-217ENST00000487825 PPP1R37O75864 691 aa12.46□□□□□ -0.41
BRCA1-217ENST00000487825 DNAJC5Q9H3Z4 198 aa12.44□□□□□ -0.42
BRCA1-217ENST00000487825 TMEM92Q6UXU6 159 aa12.42□□□□□ -0.42
BRCA1-217ENST00000487825 LCE2DQ5TA82 110 aaPredicted RBP12.41□□□□□ -0.42
BRCA1-217ENST00000487825 SNPHO15079 494 aa12.39□□□□□ -0.43
BRCA1-217ENST00000487825 ST18O60284 1047 aa12.36□□□□□ -0.43
BRCA1-217ENST00000487825 POTEMA6NI47 508 aa12.34□□□□□ -0.43
BRCA1-217ENST00000487825 RYDENQ9NUL5 291 aaKnown RBP12.34□□□□□ -0.43
BRCA1-217ENST00000487825 GTPBP6O43824 516 aaPredicted RBP12.33□□□□□ -0.44
BRCA1-217ENST00000487825 POTEGQ6S5H5 508 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms