RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 KIF21AQ7Z4S6 1674 aa8.67□□□□□ -1.02
VPS13D-209ENST00000487188 HNRNPUQ00839 825 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS13D-209ENST00000487188 ANO8Q9HCE9 1232 aaPredicted RBP8.65□□□□□ -1.02
VPS13D-209ENST00000487188 NOP58Q9Y2X3 529 aaKnown RBP8.64□□□□□ -1.03
VPS13D-209ENST00000487188 CCER2I3L3R5 266 aa8.64□□□□□ -1.03
VPS13D-209ENST00000487188 CUX2O14529 1486 aa8.64□□□□□ -1.03
VPS13D-209ENST00000487188 HIRIP3Q9BW71 556 aaPredicted RBP8.63□□□□□ -1.03
VPS13D-209ENST00000487188 CADPSQ9ULU8 1353 aa8.63□□□□□ -1.03
VPS13D-209ENST00000487188 PRDM2Q13029 1718 aa8.62□□□□□ -1.03
VPS13D-209ENST00000487188 ANP32AP39687 249 aaKnown RBP8.62□□□□□ -1.03
VPS13D-209ENST00000487188 CFTRP13569 1480 aa8.62□□□□□ -1.03
VPS13D-209ENST00000487188 ERICH6BQ5W0A0 696 aa8.61□□□□□ -1.03
VPS13D-209ENST00000487188 ERCC6Q03468 1493 aa8.61□□□□□ -1.03
VPS13D-209ENST00000487188 RTN4Q9NQC3 1192 aaKnown RBP8.6□□□□□ -1.03
VPS13D-209ENST00000487188 PPP4R2Q9NY27 417 aa8.6□□□□□ -1.03
VPS13D-209ENST00000487188 CCDC136Q96JN2 1154 aa8.58□□□□□ -1.04
VPS13D-209ENST00000487188 PDS5BQ9NTI5 1447 aa8.58□□□□□ -1.04
VPS13D-209ENST00000487188 SALL2Q9Y467 1007 aaPredicted RBP8.57□□□□□ -1.04
VPS13D-209ENST00000487188 WDR62O43379 1518 aa8.57□□□□□ -1.04
VPS13D-209ENST00000487188 ZBTB47Q9UFB7 747 aaPredicted RBP8.57□□□□□ -1.04
VPS13D-209ENST00000487188 B4GALNT3Q6L9W6 998 aa8.57□□□□□ -1.04
VPS13D-209ENST00000487188 SIN3AQ96ST3 1273 aa8.56□□□□□ -1.04
VPS13D-209ENST00000487188 CCNB3Q8WWL7 1395 aa8.56□□□□□ -1.04
VPS13D-209ENST00000487188 FAM50AQ14320 339 aaKnown RBP8.56□□□□□ -1.04
VPS13D-209ENST00000487188 KANK4Q5T7N3 995 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-209ENST00000487188 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.56□□□□□ -1.04
VPS13D-209ENST00000487188 KIF21BO75037 1637 aa8.55□□□□□ -1.04
VPS13D-209ENST00000487188 RAB3GAP2Q9H2M9 1393 aa8.55□□□□□ -1.04
VPS13D-209ENST00000487188 EIF5BO60841 1220 aaKnown RBP8.54□□□□□ -1.04
VPS13D-209ENST00000487188 PPP1R15AO75807 674 aaPredicted RBP8.54□□□□□ -1.04
VPS13D-209ENST00000487188 FANCD2Q9BXW9 1451 aa8.54□□□□□ -1.04
VPS13D-209ENST00000487188 MRC2Q9UBG0 1479 aa8.54□□□□□ -1.04
VPS13D-209ENST00000487188 RAPGEF2Q9Y4G8 1499 aa8.53□□□□□ -1.04
VPS13D-209ENST00000487188 TONSLQ96HA7 1378 aa8.52□□□□□ -1.04
VPS13D-209ENST00000487188 NPM2Q86SE8 214 aaKnown RBP8.52□□□□□ -1.05
VPS13D-209ENST00000487188 PAK3O75914 559 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-209ENST00000487188 ATP1B4Q9UN42 357 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-209ENST00000487188 URB2Q14146 1524 aaKnown RBP8.5□□□□□ -1.05
VPS13D-209ENST00000487188 IL27Q8NEV9 243 aa8.5□□□□□ -1.05
VPS13D-209ENST00000487188 FAM9BQ8IZU0 186 aa8.5□□□□□ -1.05
VPS13D-209ENST00000487188 WDR97A6NE52 1622 aa8.5□□□□□ -1.05
VPS13D-209ENST00000487188 RRBP1Q9P2E9 1410 aaKnown RBP8.49□□□□□ -1.05
VPS13D-209ENST00000487188 SETD5Q9C0A6 1442 aa8.49□□□□□ -1.05
VPS13D-209ENST00000487188 IPO9Q96P70 1041 aaKnown RBP8.49□□□□□ -1.05
VPS13D-209ENST00000487188 TIMELESSQ9UNS1 1208 aa8.48□□□□□ -1.05
VPS13D-209ENST00000487188 LAS1LQ9Y4W2 734 aaKnown RBP8.47□□□□□ -1.05
VPS13D-209ENST00000487188 NEFMP07197 916 aa8.46□□□□□ -1.05
VPS13D-209ENST00000487188 MRS2Q9HD23 443 aa8.46□□□□□ -1.06
VPS13D-209ENST00000487188 CNGB1Q14028 1251 aaPredicted RBP8.45□□□□□ -1.06
VPS13D-209ENST00000487188 MAPKBP1O60336 1514 aa8.44□□□□□ -1.06
VPS13D-209ENST00000487188 DAXXQ9UER7 740 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-209ENST00000487188 ARAP1Q96P48 1450 aa8.43□□□□□ -1.06
VPS13D-209ENST00000487188 SYNJ1O43426 1573 aa8.43□□□□□ -1.06
VPS13D-209ENST00000487188 TOPBP1Q92547 1522 aa8.42□□□□□ -1.06
VPS13D-209ENST00000487188 DNMBPQ6XZF7 1577 aa8.42□□□□□ -1.06
VPS13D-209ENST00000487188 UBE2Q2Q8WVN8 375 aa8.42□□□□□ -1.06
VPS13D-209ENST00000487188 PPM1GO15355 546 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-209ENST00000487188 TARBP1Q13395 1621 aaKnown RBP8.4□□□□□ -1.07
VPS13D-209ENST00000487188 POLR3GLQ9BT43 218 aa8.39□□□□□ -1.07
VPS13D-209ENST00000487188 DNAJC5Q9H3Z4 198 aa8.38□□□□□ -1.07
VPS13D-209ENST00000487188 ZBED9Q6R2W3 1325 aa8.38□□□□□ -1.07
VPS13D-209ENST00000487188 USP35Q9P2H5 1018 aa8.38□□□□□ -1.07
VPS13D-209ENST00000487188 EIF4G2P78344 907 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS13D-209ENST00000487188 CUX1P39880 1505 aa8.36□□□□□ -1.07
VPS13D-209ENST00000487188 IFT140Q96RY7 1462 aa8.36□□□□□ -1.07
VPS13D-209ENST00000487188 HSPA5P11021 654 aaKnown RBP8.36□□□□□ -1.07
VPS13D-209ENST00000487188 GLIPR1L2Q4G1C9 344 aa8.36□□□□□ -1.07
VPS13D-209ENST00000487188 BRPF3Q9ULD4 1205 aa8.35□□□□□ -1.07
VPS13D-209ENST00000487188 POLA1P09884 1462 aaPredicted RBP8.35□□□□□ -1.07
VPS13D-209ENST00000487188 ZNF608Q9ULD9 1512 aaPredicted RBP8.35□□□□□ -1.07
VPS13D-209ENST00000487188 ERICH3Q5RHP9 1530 aa8.35□□□□□ -1.07
VPS13D-209ENST00000487188 DDRGK1Q96HY6 314 aa8.34□□□□□ -1.07
VPS13D-209ENST00000487188 SENP3-EIF4A1A0A087X0R7 540 aa8.34□□□□□ -1.07
VPS13D-209ENST00000487188 EIF4G3O43432 1585 aaKnown RBP8.34□□□□□ -1.08
VPS13D-209ENST00000487188 CCDC184Q52MB2 194 aa8.33□□□□□ -1.08
VPS13D-209ENST00000487188 P3H3Q8IVL6 736 aa8.33□□□□□ -1.08
VPS13D-209ENST00000487188 NUDCQ9Y266 331 aa8.33□□□□□ -1.08
VPS13D-209ENST00000487188 WASHC2AQ641Q2 1341 aa8.32□□□□□ -1.08
VPS13D-209ENST00000487188 PRKRIP1Q9H875 184 aaPredicted RBP8.32□□□□□ -1.08
VPS13D-209ENST00000487188 GSE1Q14687 1217 aa8.32□□□□□ -1.08
VPS13D-209ENST00000487188 FHAD1B1AJZ9 1412 aa8.31□□□□□ -1.08
VPS13D-209ENST00000487188 AKNAQ7Z591 1439 aa8.31□□□□□ -1.08
VPS13D-209ENST00000487188 KIF27Q86VH2 1401 aa8.31□□□□□ -1.08
VPS13D-209ENST00000487188 CNTLNQ9NXG0 1405 aa8.31□□□□□ -1.08
VPS13D-209ENST00000487188 TCERG1O14776 1098 aaKnown RBP8.31□□□□□ -1.08
VPS13D-209ENST00000487188 PHLDB1Q86UU1 1377 aa8.31□□□□□ -1.08
VPS13D-209ENST00000487188 BIVM-ERCC5R4GMW8 1640 aa8.31□□□□□ -1.08
VPS13D-209ENST00000487188 FGD5Q6ZNL6 1462 aa8.3□□□□□ -1.08
VPS13D-209ENST00000487188 PRXQ9BXM0 1461 aa8.3□□□□□ -1.08
VPS13D-209ENST00000487188 ARHGAP35Q9NRY4 1499 aa8.3□□□□□ -1.08
VPS13D-209ENST00000487188 RSPH6AQ9H0K4 717 aa8.3□□□□□ -1.08
VPS13D-209ENST00000487188 PDE4AP27815 886 aa8.29□□□□□ -1.08
VPS13D-209ENST00000487188 C11orf95C9JLR9 678 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-209ENST00000487188 PKNOX2Q96KN3 472 aa8.29□□□□□ -1.08
VPS13D-209ENST00000487188 RAD54L2Q9Y4B4 1467 aa8.29□□□□□ -1.08
VPS13D-209ENST00000487188 TIAM1Q13009 1591 aa8.29□□□□□ -1.08
VPS13D-209ENST00000487188 TOP2BQ02880 1626 aa8.28□□□□□ -1.08
VPS13D-209ENST00000487188 CCDC18Q5T9S5 1454 aa8.28□□□□□ -1.08
VPS13D-209ENST00000487188 LRRC9Q6ZRR7 1453 aa8.28□□□□□ -1.08
VPS13D-209ENST00000487188 SMG6Q86US8 1419 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms