RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 PLCD3Q8N3E9 789 aa9.99□□□□□ -0.81
PTCD3-216ENST00000487043 CCDC61Q9Y6R9 512 aa9.96□□□□□ -0.82
PTCD3-216ENST00000487043 PELP1Q8IZL8 1130 aaKnown RBP9.95□□□□□ -0.82
PTCD3-216ENST00000487043 ATMINO43313 823 aaPredicted RBP9.92□□□□□ -0.82
PTCD3-216ENST00000487043 ASTLQ6HA08 431 aaPredicted RBP9.92□□□□□ -0.82
PTCD3-216ENST00000487043 RASEFQ8IZ41 740 aa9.91□□□□□ -0.82
PTCD3-216ENST00000487043 KIF12Q96FN5 646 aa9.91□□□□□ -0.82
PTCD3-216ENST00000487043 METRNQ9UJH8 293 aa9.91□□□□□ -0.82
PTCD3-216ENST00000487043 POTEB2H3BUK9 544 aa9.9□□□□□ -0.82
PTCD3-216ENST00000487043 SLC24A1O60721 1099 aa9.9□□□□□ -0.82
PTCD3-216ENST00000487043 SLC39A7Q92504 469 aa9.89□□□□□ -0.83
PTCD3-216ENST00000487043 OTUD5Q96G74 571 aa9.89□□□□□ -0.83
PTCD3-216ENST00000487043 ZBTB47Q9UFB7 747 aaPredicted RBP9.89□□□□□ -0.83
PTCD3-216ENST00000487043 C7P10643 843 aa9.88□□□□□ -0.83
PTCD3-216ENST00000487043 MAP3K13O43283 966 aa9.87□□□□□ -0.83
PTCD3-216ENST00000487043 ATN1P54259 1190 aaPredicted RBP9.85□□□□□ -0.83
PTCD3-216ENST00000487043 BMP2KQ9NSY1 1161 aaPredicted RBP9.82□□□□□ -0.84
PTCD3-216ENST00000487043 TRPC6Q9Y210 931 aa9.82□□□□□ -0.84
PTCD3-216ENST00000487043 TIE1P35590 1138 aa9.8□□□□□ -0.84
PTCD3-216ENST00000487043 NUBP1P53384 320 aa9.8□□□□□ -0.84
PTCD3-216ENST00000487043 FAM212AQ96EL1 285 aa9.79□□□□□ -0.84
PTCD3-216ENST00000487043 PCDHB13Q9Y5F0 798 aa9.79□□□□□ -0.84
PTCD3-216ENST00000487043 MAMSTRQ6ZN01 415 aa9.77□□□□□ -0.85
PTCD3-216ENST00000487043 FBXO3Q9UK99 471 aa9.76□□□□□ -0.85
PTCD3-216ENST00000487043 TTLL13PA6NNM8 815 aa9.75□□□□□ -0.85
PTCD3-216ENST00000487043 SGIP1Q9BQI5 828 aa9.75□□□□□ -0.85
PTCD3-216ENST00000487043 SEC24BO95487 1268 aa9.74□□□□□ -0.85
PTCD3-216ENST00000487043 POTEJP0CG39 1038 aa9.74□□□□□ -0.85
PTCD3-216ENST00000487043 SCUBE2Q9NQ36 999 aa9.74□□□□□ -0.85
PTCD3-216ENST00000487043 DCAF8Q5TAQ9 597 aa9.72□□□□□ -0.85
PTCD3-216ENST00000487043 TRIM35Q9UPQ4 493 aa9.71□□□□□ -0.86
PTCD3-216ENST00000487043 IFNL1Q8IU54 200 aa9.7□□□□□ -0.86
PTCD3-216ENST00000487043 PLSCR2Q9NRY7 297 aa9.7□□□□□ -0.86
PTCD3-216ENST00000487043 POTEFA5A3E0 1075 aa9.69□□□□□ -0.86
PTCD3-216ENST00000487043 POTEMA6NI47 508 aa9.68□□□□□ -0.86
PTCD3-216ENST00000487043 KLHL34Q8N239 644 aa9.67□□□□□ -0.86
PTCD3-216ENST00000487043 TMEM106CQ9BVX2 250 aa9.67□□□□□ -0.86
PTCD3-216ENST00000487043 PYGBP11216 843 aa9.66□□□□□ -0.86
PTCD3-216ENST00000487043 COLQQ9Y215 455 aaPredicted RBP9.66□□□□□ -0.86
PTCD3-216ENST00000487043 IER5LQ5T953 404 aa9.65□□□□□ -0.86
PTCD3-216ENST00000487043 POTEGQ6S5H5 508 aa9.65□□□□□ -0.86
PTCD3-216ENST00000487043 VASPP50552 380 aaPredicted RBP9.64□□□□□ -0.87
PTCD3-216ENST00000487043 FAM163AQ96GL9 167 aaPredicted RBP9.63□□□□□ -0.87
PTCD3-216ENST00000487043 PLCG2P16885 1265 aa9.59□□□□□ -0.87
PTCD3-216ENST00000487043 PCDHB8Q9UN66 801 aa9.58□□□□□ -0.88
PTCD3-216ENST00000487043 GSE1Q14687 1217 aa9.57□□□□□ -0.88
PTCD3-216ENST00000487043 IRX5P78411 483 aaPredicted RBP9.52□□□□□ -0.89
PTCD3-216ENST00000487043 IFNLR1Q8IU57 520 aaPredicted RBP9.52□□□□□ -0.89
PTCD3-216ENST00000487043 SLAIN1Q8ND83 568 aa9.52□□□□□ -0.89
PTCD3-216ENST00000487043 LCE2DQ5TA82 110 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-216ENST00000487043 ZNF467Q7Z7K2 595 aaPredicted RBP9.51□□□□□ -0.89
PTCD3-216ENST00000487043 OCEL1Q9H607 264 aa9.51□□□□□ -0.89
PTCD3-216ENST00000487043 PCDH10Q9P2E7 1040 aa9.5□□□□□ -0.89
PTCD3-216ENST00000487043 GOLGA2Q08379 1002 aa9.49□□□□□ -0.89
PTCD3-216ENST00000487043 SPOCK2Q92563 424 aa9.46□□□□□ -0.9
PTCD3-216ENST00000487043 MKRN3Q13064 507 aaKnown RBP9.45□□□□□ -0.9
PTCD3-216ENST00000487043 CIZ1Q9ULV3 898 aaPredicted RBP9.45□□□□□ -0.9
PTCD3-216ENST00000487043 CHRM1P11229 460 aaPredicted RBP9.44□□□□□ -0.9
PTCD3-216ENST00000487043 PSEN1P49768 467 aa9.42□□□□□ -0.9
PTCD3-216ENST00000487043 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.42□□□□□ -0.9
PTCD3-216ENST00000487043 ST18O60284 1047 aa9.38□□□□□ -0.91
PTCD3-216ENST00000487043 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.38□□□□□ -0.916e-7■□□□□ 10.9
PTCD3-216ENST00000487043 PDAP1Q13442 181 aaKnown RBP9.37□□□□□ -0.91
PTCD3-216ENST00000487043 C3orf67Q6ZVT6 689 aa9.37□□□□□ -0.91
PTCD3-216ENST00000487043 PDCD7Q8N8D1 485 aaKnown RBP9.37□□□□□ -0.91
PTCD3-216ENST00000487043 L3MBTL3Q96JM7 780 aaPredicted RBP9.36□□□□□ -0.91
PTCD3-216ENST00000487043 SNPHO15079 494 aa9.35□□□□□ -0.91
PTCD3-216ENST00000487043 CDAN1Q8IWY9 1227 aa9.35□□□□□ -0.91
PTCD3-216ENST00000487043 DCAF8L2P0C7V8 631 aa9.34□□□□□ -0.91
PTCD3-216ENST00000487043 CABP2Q9NPB3 220 aa9.33□□□□□ -0.92
PTCD3-216ENST00000487043 G3V3G9 751 aa9.29□□□□□ -0.92
PTCD3-216ENST00000487043 PLCB2Q00722 1185 aa9.29□□□□□ -0.92
PTCD3-216ENST00000487043 TMEM121BQ9BXQ6 578 aaPredicted RBP9.29□□□□□ -0.92
PTCD3-216ENST00000487043 PKD2Q13563 968 aa9.26□□□□□ -0.93
PTCD3-216ENST00000487043 DPY19L2Q6NUT2 758 aa9.26□□□□□ -0.93
PTCD3-216ENST00000487043 TRIM41Q8WV44 630 aa9.26□□□□□ -0.93
PTCD3-216ENST00000487043 MARVELD3Q96A59 401 aa9.26□□□□□ -0.93
PTCD3-216ENST00000487043 ILDR1Q86SU0 546 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-216ENST00000487043 HAP1P54257 671 aaPredicted RBP9.22□□□□□ -0.93
PTCD3-216ENST00000487043 BOLA1Q9Y3E2 137 aa9.22□□□□□ -0.93
PTCD3-216ENST00000487043 EMP3P54852 163 aa9.2□□□□□ -0.94
PTCD3-216ENST00000487043 EFCAB3Q8N7B9 438 aa9.19□□□□□ -0.94
PTCD3-216ENST00000487043 RNF25Q96BH1 459 aaPredicted RBP9.17□□□□□ -0.94
PTCD3-216ENST00000487043 RIOK3O14730 519 aaKnown RBP9.15□□□□□ -0.94
PTCD3-216ENST00000487043 ECM2O94769 699 aaPredicted RBP9.15□□□□□ -0.94
PTCD3-216ENST00000487043 FAM205CA6NFA0 338 aa9.13□□□□□ -0.95
PTCD3-216ENST00000487043 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-216ENST00000487043 VGFO15240 615 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-216ENST00000487043 ZNF710Q8N1W2 664 aa9.12□□□□□ -0.95
PTCD3-216ENST00000487043 ZFP91Q96JP5 570 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-216ENST00000487043 SPNS2Q8IVW8 549 aa9.11□□□□□ -0.95
PTCD3-216ENST00000487043 HS3ST6Q96QI5 342 aa9.11□□□□□ -0.95
PTCD3-216ENST00000487043 SOX12O15370 315 aa9.09□□□□□ -0.95
PTCD3-216ENST00000487043 DOK7Q18PE1 504 aa9.09□□□□□ -0.95
PTCD3-216ENST00000487043 HOXB3P14651 431 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-216ENST00000487043 MMRN1Q13201 1228 aa9.08□□□□□ -0.96
PTCD3-216ENST00000487043 MICALL2Q8IY33 904 aa9.07□□□□□ -0.96
PTCD3-216ENST00000487043 POTEB3A0JP26 581 aa9.06□□□□□ -0.96
PTCD3-216ENST00000487043 RIMBP2O15034 1052 aa9.06□□□□□ -0.96
PTCD3-216ENST00000487043 POTEBQ6S5H4 581 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms