RNA–Protein interactions for RNA: ENST00000486032.1

COPS3-208, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 725 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-208ENST00000486032 SHROOM4Q9ULL8 1493 aa10.67□□□□□ -0.7
COPS3-208ENST00000486032 EIF4G1Q04637 1599 aaKnown RBP10.58□□□□□ -0.72
COPS3-208ENST00000486032 ZBTB22O15209 634 aa10.56□□□□□ -0.72
COPS3-208ENST00000486032 CC2D2AQ9P2K1 1620 aa10.55□□□□□ -0.72
COPS3-208ENST00000486032 MAMSTRQ6ZN01 415 aa10.53□□□□□ -0.72
COPS3-208ENST00000486032 PELP1Q8IZL8 1130 aaKnown RBP10.53□□□□□ -0.72
COPS3-208ENST00000486032 FAM163AQ96GL9 167 aaPredicted RBP10.53□□□□□ -0.72
COPS3-208ENST00000486032 LCE2DQ5TA82 110 aaPredicted RBP10.51□□□□□ -0.73
COPS3-208ENST00000486032 CECR2Q9BXF3 1484 aa10.5□□□□□ -0.73
COPS3-208ENST00000486032 PAK3O75914 559 aaPredicted RBP10.49□□□□□ -0.73
COPS3-208ENST00000486032 METRNQ9UJH8 293 aa10.49□□□□□ -0.73
COPS3-208ENST00000486032 POTEJP0CG39 1038 aa10.47□□□□□ -0.73
COPS3-208ENST00000486032 PHF12Q96QT6 1004 aa10.46□□□□□ -0.73
COPS3-208ENST00000486032 C7P10643 843 aa10.45□□□□□ -0.74
COPS3-208ENST00000486032 SLC39A7Q92504 469 aa10.45□□□□□ -0.74
COPS3-208ENST00000486032 CREBZFQ9NS37 354 aa10.45□□□□□ -0.74
COPS3-208ENST00000486032 ASTLQ6HA08 431 aaPredicted RBP10.42□□□□□ -0.74
COPS3-208ENST00000486032 SCUBE2Q9NQ36 999 aa10.42□□□□□ -0.74
COPS3-208ENST00000486032 SMARCA4P51532 1647 aa10.39□□□□□ -0.75
COPS3-208ENST00000486032 ATMINO43313 823 aaPredicted RBP10.37□□□□□ -0.75
COPS3-208ENST00000486032 CDAN1Q8IWY9 1227 aa10.37□□□□□ -0.75
COPS3-208ENST00000486032 MROH2BQ7Z745 1585 aa10.36□□□□□ -0.75
COPS3-208ENST00000486032 STAG3Q9UJ98 1225 aa10.34□□□□□ -0.75
COPS3-208ENST00000486032 ATAD2BQ9ULI0 1458 aa10.32□□□□□ -0.76
COPS3-208ENST00000486032 MS4A3Q96HJ5 214 aa10.3□□□□□ -0.76
COPS3-208ENST00000486032 BAZ1AQ9NRL2 1556 aaPredicted RBP10.3□□□□□ -0.76
COPS3-208ENST00000486032 NPM1P06748 294 aaKnown RBP eCLIP10.29□□□□□ -0.76
COPS3-208ENST00000486032 WIZO95785 1651 aa10.27□□□□□ -0.77
COPS3-208ENST00000486032 NCAPD3P42695 1498 aa10.26□□□□□ -0.77
COPS3-208ENST00000486032 PEG3Q9GZU2 1588 aa10.24□□□□□ -0.77
COPS3-208ENST00000486032 SMARCA2P51531 1590 aa10.22□□□□□ -0.77
COPS3-208ENST00000486032 HMGXB3Q12766 1538 aa10.22□□□□□ -0.77
COPS3-208ENST00000486032 ATN1P54259 1190 aaPredicted RBP10.21□□□□□ -0.77
COPS3-208ENST00000486032 BAZ1BQ9UIG0 1483 aaKnown RBP10.2□□□□□ -0.78
COPS3-208ENST00000486032 RSF1Q96T23 1441 aaPredicted RBP10.19□□□□□ -0.78
COPS3-208ENST00000486032 MMRN1Q13201 1228 aa10.18□□□□□ -0.78
COPS3-208ENST00000486032 POTEFA5A3E0 1075 aa10.17□□□□□ -0.78
COPS3-208ENST00000486032 NESP48681 1621 aa10.16□□□□□ -0.78
COPS3-208ENST00000486032 MNX1P50219 401 aaPredicted RBP10.14□□□□□ -0.79
COPS3-208ENST00000486032 SUPT5HO00267 1087 aaKnown RBP10.13□□□□□ -0.79
COPS3-208ENST00000486032 SPNS2Q8IVW8 549 aa10.12□□□□□ -0.79
COPS3-208ENST00000486032 ST18O60284 1047 aa10.09□□□□□ -0.79
COPS3-208ENST00000486032 TOP2AP11388 1531 aaKnown RBP10.08□□□□□ -0.8
COPS3-208ENST00000486032 BMP2KQ9NSY1 1161 aaPredicted RBP10.08□□□□□ -0.8
COPS3-208ENST00000486032 SEC24BO95487 1268 aa10.07□□□□□ -0.8
COPS3-208ENST00000486032 TSPYL2Q9H2G4 693 aaPredicted RBP10.05□□□□□ -0.8
COPS3-208ENST00000486032 COLQQ9Y215 455 aaPredicted RBP10.03□□□□□ -0.8
COPS3-208ENST00000486032 KIF21AQ7Z4S6 1674 aa10.02□□□□□ -0.8
COPS3-208ENST00000486032 TIE1P35590 1138 aa10.02□□□□□ -0.81
COPS3-208ENST00000486032 SLAIN1Q8ND83 568 aa10.02□□□□□ -0.81
COPS3-208ENST00000486032 KIF12Q96FN5 646 aa10.01□□□□□ -0.81
COPS3-208ENST00000486032 CCDC61Q9Y6R9 512 aa10.01□□□□□ -0.81
COPS3-208ENST00000486032 TRPC6Q9Y210 931 aa9.99□□□□□ -0.81
COPS3-208ENST00000486032 CCDC88BA6NC98 1476 aa9.98□□□□□ -0.81
COPS3-208ENST00000486032 THOC2Q8NI27 1593 aaKnown RBP9.98□□□□□ -0.81
COPS3-208ENST00000486032 LAMC3Q9Y6N6 1575 aa9.98□□□□□ -0.81
COPS3-208ENST00000486032 ERCC6Q03468 1493 aa9.98□□□□□ -0.81
COPS3-208ENST00000486032 TMEM121BQ9BXQ6 578 aaPredicted RBP9.95□□□□□ -0.82
COPS3-208ENST00000486032 CADPSQ9ULU8 1353 aa9.95□□□□□ -0.82
COPS3-208ENST00000486032 IER5LQ5T953 404 aa9.93□□□□□ -0.82
COPS3-208ENST00000486032 SPDYE4A6NLX3 237 aa9.92□□□□□ -0.82
COPS3-208ENST00000486032 TTLL13PA6NNM8 815 aa9.92□□□□□ -0.82
COPS3-208ENST00000486032 CFTRP13569 1480 aa9.91□□□□□ -0.82
COPS3-208ENST00000486032 MAP3K13O43283 966 aa9.91□□□□□ -0.82
COPS3-208ENST00000486032 FANCD2Q9BXW9 1451 aa9.88□□□□□ -0.83
COPS3-208ENST00000486032 TRIM35Q9UPQ4 493 aa9.87□□□□□ -0.83
COPS3-208ENST00000486032 PRDM2Q13029 1718 aa9.87□□□□□ -0.83
COPS3-208ENST00000486032 SNPHO15079 494 aa9.86□□□□□ -0.83
COPS3-208ENST00000486032 PDS5BQ9NTI5 1447 aa9.86□□□□□ -0.83
COPS3-208ENST00000486032 MRC2Q9UBG0 1479 aa9.85□□□□□ -0.83
COPS3-208ENST00000486032 URB2Q14146 1524 aaKnown RBP9.85□□□□□ -0.83
COPS3-208ENST00000486032 CUX2O14529 1486 aa9.85□□□□□ -0.83
COPS3-208ENST00000486032 CEP164Q9UPV0 1460 aa9.85□□□□□ -0.83
COPS3-208ENST00000486032 WDR62O43379 1518 aa9.84□□□□□ -0.83
COPS3-208ENST00000486032 MARVELD3Q96A59 401 aa9.84□□□□□ -0.83
COPS3-208ENST00000486032 PLCG2P16885 1265 aa9.79□□□□□ -0.84
COPS3-208ENST00000486032 SGIP1Q9BQI5 828 aa9.76□□□□□ -0.85
COPS3-208ENST00000486032 TOPBP1Q92547 1522 aa9.75□□□□□ -0.85
COPS3-208ENST00000486032 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.73□□□□□ -0.85
COPS3-208ENST00000486032 EMP3P54852 163 aa9.72□□□□□ -0.85
COPS3-208ENST00000486032 KRTAP3-3Q9BYR6 98 aa9.72□□□□□ -0.85
COPS3-208ENST00000486032 KRTAP3-2Q9BYR7 98 aa9.72□□□□□ -0.85
COPS3-208ENST00000486032 PCDHB13Q9Y5F0 798 aa9.72□□□□□ -0.85
COPS3-208ENST00000486032 CUX1P39880 1505 aa9.72□□□□□ -0.85
COPS3-208ENST00000486032 DNMBPQ6XZF7 1577 aa9.71□□□□□ -0.85
COPS3-208ENST00000486032 RASEFQ8IZ41 740 aa9.71□□□□□ -0.86
COPS3-208ENST00000486032 ZNF608Q9ULD9 1512 aaPredicted RBP9.71□□□□□ -0.86
COPS3-208ENST00000486032 IRX5P78411 483 aaPredicted RBP9.7□□□□□ -0.86
COPS3-208ENST00000486032 ABCC8Q09428 1581 aa9.69□□□□□ -0.86
COPS3-208ENST00000486032 HS3ST6Q96QI5 342 aa9.68□□□□□ -0.86
COPS3-208ENST00000486032 RAD54L2Q9Y4B4 1467 aa9.67□□□□□ -0.86
COPS3-208ENST00000486032 PLEKHG5O94827 1062 aa9.67□□□□□ -0.86
COPS3-208ENST00000486032 TMEM106CQ9BVX2 250 aa9.67□□□□□ -0.86
COPS3-208ENST00000486032 TARBP1Q13395 1621 aaKnown RBP9.67□□□□□ -0.86
COPS3-208ENST00000486032 POLA1P09884 1462 aaPredicted RBP9.66□□□□□ -0.86
COPS3-208ENST00000486032 FGD5Q6ZNL6 1462 aa9.66□□□□□ -0.86
COPS3-208ENST00000486032 OCEL1Q9H607 264 aa9.65□□□□□ -0.86
COPS3-208ENST00000486032 SYNJ1O43426 1573 aa9.65□□□□□ -0.86
COPS3-208ENST00000486032 EIF4G3O43432 1585 aaKnown RBP9.64□□□□□ -0.87
COPS3-208ENST00000486032 FAM205CA6NFA0 338 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms