RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MNX1P50219 401 aaPredicted RBP11.64□□□□□ -0.55
VPS50-216ENST00000484954 FAM163AQ96GL9 167 aaPredicted RBP11.62□□□□□ -0.55
VPS50-216ENST00000484954 MS4A3Q96HJ5 214 aa11.62□□□□□ -0.55
VPS50-216ENST00000484954 METRNQ9UJH8 293 aa11.58□□□□□ -0.56
VPS50-216ENST00000484954 ATMINO43313 823 aaPredicted RBP11.54□□□□□ -0.56
VPS50-216ENST00000484954 ASTLQ6HA08 431 aaPredicted RBP11.54□□□□□ -0.56
VPS50-216ENST00000484954 TSPYL2Q9H2G4 693 aaPredicted RBP11.54□□□□□ -0.56
VPS50-216ENST00000484954 MAMSTRQ6ZN01 415 aa11.52□□□□□ -0.57
VPS50-216ENST00000484954 SLC39A7Q92504 469 aa11.51□□□□□ -0.57
VPS50-216ENST00000484954 CDAN1Q8IWY9 1227 aa11.5□□□□□ -0.57
VPS50-216ENST00000484954 C7P10643 843 aa11.49□□□□□ -0.57
VPS50-216ENST00000484954 ATN1P54259 1190 aaPredicted RBP11.45□□□□□ -0.58
VPS50-216ENST00000484954 CCDC61Q9Y6R9 512 aa11.42□□□□□ -0.58
VPS50-216ENST00000484954 TRPC6Q9Y210 931 aa11.39□□□□□ -0.59
VPS50-216ENST00000484954 KIF12Q96FN5 646 aa11.38□□□□□ -0.59
VPS50-216ENST00000484954 SCUBE2Q9NQ36 999 aa11.38□□□□□ -0.59
VPS50-216ENST00000484954 BMP2KQ9NSY1 1161 aaPredicted RBP11.36□□□□□ -0.59
VPS50-216ENST00000484954 POTEFA5A3E0 1075 aa11.35□□□□□ -0.59
VPS50-216ENST00000484954 MMRN1Q13201 1228 aa11.35□□□□□ -0.59
VPS50-216ENST00000484954 MAP3K13O43283 966 aa11.33□□□□□ -0.6
VPS50-216ENST00000484954 PROM2Q8N271 834 aa11.31□□□□□ -0.6
VPS50-216ENST00000484954 RASEFQ8IZ41 740 aa11.29□□□□□ -0.6
VPS50-216ENST00000484954 SPNS2Q8IVW8 549 aa11.28□□□□□ -0.6
VPS50-216ENST00000484954 MIER1Q8N108 512 aa11.28□□□□□ -0.6
VPS50-216ENST00000484954 TIE1P35590 1138 aa11.26□□□□□ -0.61
VPS50-216ENST00000484954 COLQQ9Y215 455 aaPredicted RBP11.26□□□□□ -0.61
VPS50-216ENST00000484954 PLEKHG5O94827 1062 aa11.25□□□□□ -0.61
VPS50-216ENST00000484954 SEC24BO95487 1268 aa11.25□□□□□ -0.61
VPS50-216ENST00000484954 TTLL13PA6NNM8 815 aa11.23□□□□□ -0.61
VPS50-216ENST00000484954 FKBP8Q14318 412 aa11.23□□□□□ -0.61
VPS50-216ENST00000484954 TRIM35Q9UPQ4 493 aa11.17□□□□□ -0.62
VPS50-216ENST00000484954 PCDHB13Q9Y5F0 798 aa11.17□□□□□ -0.62
VPS50-216ENST00000484954 ST18O60284 1047 aa11.15□□□□□ -0.62
VPS50-216ENST00000484954 PLCD3Q8N3E9 789 aa11.15□□□□□ -0.62
VPS50-216ENST00000484954 SLAIN1Q8ND83 568 aa11.1□□□□□ -0.63
VPS50-216ENST00000484954 IER5LQ5T953 404 aa11.09□□□□□ -0.63
VPS50-216ENST00000484954 IFNL1Q8IU54 200 aa11.09□□□□□ -0.63
VPS50-216ENST00000484954 SGIP1Q9BQI5 828 aa11.07□□□□□ -0.64
VPS50-216ENST00000484954 NUBP1P53384 320 aa11.06□□□□□ -0.64
VPS50-216ENST00000484954 TMEM106CQ9BVX2 250 aa11.06□□□□□ -0.64
VPS50-216ENST00000484954 PLCG2P16885 1265 aa11.03□□□□□ -0.64
VPS50-216ENST00000484954 FAM212AQ96EL1 285 aa10.99□□□□□ -0.65
VPS50-216ENST00000484954 ZBTB47Q9UFB7 747 aaPredicted RBP10.99□□□□□ -0.65
VPS50-216ENST00000484954 IRX5P78411 483 aaPredicted RBP10.96□□□□□ -0.65
VPS50-216ENST00000484954 PYGBP11216 843 aa10.92□□□□□ -0.66
VPS50-216ENST00000484954 DCAF8Q5TAQ9 597 aa10.91□□□□□ -0.66
VPS50-216ENST00000484954 TMEM121BQ9BXQ6 578 aaPredicted RBP10.91□□□□□ -0.66
VPS50-216ENST00000484954 OCEL1Q9H607 264 aa10.9□□□□□ -0.66
VPS50-216ENST00000484954 MARVELD3Q96A59 401 aa10.89□□□□□ -0.67
VPS50-216ENST00000484954 PCDHB8Q9UN66 801 aa10.89□□□□□ -0.67
VPS50-216ENST00000484954 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.87□□□□□ -0.67
VPS50-216ENST00000484954 SNPHO15079 494 aa10.82□□□□□ -0.68
VPS50-216ENST00000484954 KRTAP3-3Q9BYR6 98 aa10.8□□□□□ -0.68
VPS50-216ENST00000484954 KRTAP3-2Q9BYR7 98 aa10.8□□□□□ -0.68
VPS50-216ENST00000484954 FBXO3Q9UK99 471 aa10.77□□□□□ -0.69
VPS50-216ENST00000484954 C3orf67Q6ZVT6 689 aa10.75□□□□□ -0.69
VPS50-216ENST00000484954 POTEB3A0JP26 581 aa10.74□□□□□ -0.69
VPS50-216ENST00000484954 POTEBQ6S5H4 581 aa10.74□□□□□ -0.69
VPS50-216ENST00000484954 PDCD7Q8N8D1 485 aaKnown RBP10.74□□□□□ -0.69
VPS50-216ENST00000484954 EMP3P54852 163 aa10.73□□□□□ -0.69
VPS50-216ENST00000484954 GOLGA2Q08379 1002 aa10.73□□□□□ -0.69
VPS50-216ENST00000484954 VASPP50552 380 aaPredicted RBP10.72□□□□□ -0.69
VPS50-216ENST00000484954 MKRN3Q13064 507 aaKnown RBP10.72□□□□□ -0.69
VPS50-216ENST00000484954 FAM205CA6NFA0 338 aa10.69□□□□□ -0.7
VPS50-216ENST00000484954 KLHL34Q8N239 644 aa10.68□□□□□ -0.7
VPS50-216ENST00000484954 L3MBTL3Q96JM7 780 aaPredicted RBP10.68□□□□□ -0.7
VPS50-216ENST00000484954 ZNF467Q7Z7K2 595 aaPredicted RBP10.67□□□□□ -0.7
VPS50-216ENST00000484954 HS3ST6Q96QI5 342 aa10.67□□□□□ -0.7
VPS50-216ENST00000484954 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.67□□□□□ -0.73e-6■□□□□ 8.1
VPS50-216ENST00000484954 GSE1Q14687 1217 aa10.64□□□□□ -0.71
VPS50-216ENST00000484954 PSEN1P49768 467 aa10.63□□□□□ -0.71
VPS50-216ENST00000484954 DPY19L2Q6NUT2 758 aa10.61□□□□□ -0.71
VPS50-216ENST00000484954 IFNLR1Q8IU57 520 aaPredicted RBP10.6□□□□□ -0.71
VPS50-216ENST00000484954 CHRM1P11229 460 aaPredicted RBP10.55□□□□□ -0.72
VPS50-216ENST00000484954 CABP2Q9NPB3 220 aa10.54□□□□□ -0.72
VPS50-216ENST00000484954 G3V3G9 751 aa10.53□□□□□ -0.72
VPS50-216ENST00000484954 HOXB3P14651 431 aaPredicted RBP10.51□□□□□ -0.73
VPS50-216ENST00000484954 PDAP1Q13442 181 aaKnown RBP10.51□□□□□ -0.73
VPS50-216ENST00000484954 BOLA1Q9Y3E2 137 aa10.51□□□□□ -0.73
VPS50-216ENST00000484954 ILDR1Q86SU0 546 aaPredicted RBP10.5□□□□□ -0.73
VPS50-216ENST00000484954 ZNF710Q8N1W2 664 aa10.49□□□□□ -0.73
VPS50-216ENST00000484954 CIZ1Q9ULV3 898 aaPredicted RBP10.47□□□□□ -0.73
VPS50-216ENST00000484954 RNF166Q96A37 237 aaPredicted RBP10.46□□□□□ -0.73
VPS50-216ENST00000484954 ERBB3P21860 1342 aa10.46□□□□□ -0.73
VPS50-216ENST00000484954 HOXB1P14653 301 aaPredicted RBP10.44□□□□□ -0.74
VPS50-216ENST00000484954 SPOCK2Q92563 424 aa10.44□□□□□ -0.74
VPS50-216ENST00000484954 DOK7Q18PE1 504 aa10.41□□□□□ -0.74
VPS50-216ENST00000484954 VARS2Q5ST30 1063 aaKnown RBP10.38□□□□□ -0.75
VPS50-216ENST00000484954 EFCAB3Q8N7B9 438 aa10.37□□□□□ -0.75
VPS50-216ENST00000484954 RIMBP2O15034 1052 aa10.34□□□□□ -0.75
VPS50-216ENST00000484954 MYT1LQ9UL68 1186 aa10.33□□□□□ -0.76
VPS50-216ENST00000484954 TMEM92Q6UXU6 159 aa10.32□□□□□ -0.76
VPS50-216ENST00000484954 MICALL2Q8IY33 904 aa10.29□□□□□ -0.76
VPS50-216ENST00000484954 ZNF687Q8N1G0 1237 aa10.27□□□□□ -0.77
VPS50-216ENST00000484954 GPR153Q6NV75 609 aa10.24□□□□□ -0.77
VPS50-216ENST00000484954 ZSWIM6Q9HCJ5 1215 aa10.23□□□□□ -0.77
VPS50-216ENST00000484954 ANKRD13DQ6ZTN6 518 aa10.22□□□□□ -0.77
VPS50-216ENST00000484954 ARSIQ5FYB1 569 aa10.21□□□□□ -0.77
VPS50-216ENST00000484954 KHSRPQ92945 711 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS50-216ENST00000484954 MS4A4AQ96JQ5 239 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms