RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 CIZ1Q9ULV3 898 aaPredicted RBP18.45■□□□□ 0.54
SMC5-203ENST00000475540 EVX2Q03828 476 aa18.37■□□□□ 0.53
SMC5-203ENST00000475540 CCDC61Q9Y6R9 512 aa18.32■□□□□ 0.52
SMC5-203ENST00000475540 AMER1Q5JTC6 1135 aaPredicted RBP18.27■□□□□ 0.52
SMC5-203ENST00000475540 ZNF579Q8NAF0 562 aaKnown RBP18.27■□□□□ 0.52
SMC5-203ENST00000475540 TRIM41Q8WV44 630 aa18.25■□□□□ 0.51
SMC5-203ENST00000475540 PYGBP11216 843 aa18.22■□□□□ 0.51
SMC5-203ENST00000475540 PHF12Q96QT6 1004 aa18.22■□□□□ 0.51
SMC5-203ENST00000475540 PKD2Q13563 968 aa18.21■□□□□ 0.51
SMC5-203ENST00000475540 CHRM1P11229 460 aaPredicted RBP18.18■□□□□ 0.5
SMC5-203ENST00000475540 CLCN6P51797 869 aa18.18■□□□□ 0.5
SMC5-203ENST00000475540 ECM2O94769 699 aaPredicted RBP18.16■□□□□ 0.5
SMC5-203ENST00000475540 KIF12Q96FN5 646 aa18.16■□□□□ 0.5
SMC5-203ENST00000475540 RTN4Q9NQC3 1192 aaKnown RBP18.15■□□□□ 0.5
SMC5-203ENST00000475540 MAP3K13O43283 966 aa18.12■□□□□ 0.49
SMC5-203ENST00000475540 SGIP1Q9BQI5 828 aa18.09■□□□□ 0.49
SMC5-203ENST00000475540 PCDHB13Q9Y5F0 798 aa18.09■□□□□ 0.49
SMC5-203ENST00000475540 GABBR2O75899 941 aa18.06■□□□□ 0.48
SMC5-203ENST00000475540 ZNF467Q7Z7K2 595 aaPredicted RBP18.01■□□□□ 0.47
SMC5-203ENST00000475540 MS4A3Q96HJ5 214 aa18.01■□□□□ 0.47
SMC5-203ENST00000475540 GALR2O43603 387 aaPredicted RBP17.98■□□□□ 0.47
SMC5-203ENST00000475540 IFNL1Q8IU54 200 aa17.98■□□□□ 0.47
SMC5-203ENST00000475540 PCDHB8Q9UN66 801 aa17.97■□□□□ 0.47
SMC5-203ENST00000475540 RGL2O15211 777 aa17.94■□□□□ 0.46
SMC5-203ENST00000475540 RIOK3O14730 519 aaKnown RBP17.93■□□□□ 0.46
SMC5-203ENST00000475540 RNF25Q96BH1 459 aaPredicted RBP17.91■□□□□ 0.46
SMC5-203ENST00000475540 TAOK2Q9UL54 1235 aa17.9■□□□□ 0.46
SMC5-203ENST00000475540 VGFO15240 615 aaPredicted RBP17.83■□□□□ 0.44
SMC5-203ENST00000475540 DCBLD2Q96PD2 775 aa17.83■□□□□ 0.44
SMC5-203ENST00000475540 PDAP1Q13442 181 aaKnown RBP17.82■□□□□ 0.44
SMC5-203ENST00000475540 DCAF8L2P0C7V8 631 aa17.81■□□□□ 0.44
SMC5-203ENST00000475540 TRPC6Q9Y210 931 aa17.81■□□□□ 0.44
SMC5-203ENST00000475540 PSEN1P49768 467 aa17.8■□□□□ 0.44
SMC5-203ENST00000475540 TIE1P35590 1138 aa17.79■□□□□ 0.44
SMC5-203ENST00000475540 TMEM106CQ9BVX2 250 aa17.75■□□□□ 0.43
SMC5-203ENST00000475540 BMP2KQ9NSY1 1161 aaPredicted RBP17.73■□□□□ 0.43
SMC5-203ENST00000475540 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.72■□□□□ 0.43
SMC5-203ENST00000475540 ZFP91Q96JP5 570 aaPredicted RBP17.72■□□□□ 0.43
SMC5-203ENST00000475540 TTLL13PA6NNM8 815 aa17.7■□□□□ 0.42
SMC5-203ENST00000475540 ATMINO43313 823 aaPredicted RBP17.68■□□□□ 0.42
SMC5-203ENST00000475540 ASTLQ6HA08 431 aaPredicted RBP17.68■□□□□ 0.42
SMC5-203ENST00000475540 STK25O00506 426 aa17.66■□□□□ 0.42
SMC5-203ENST00000475540 ATN1P54259 1190 aaPredicted RBP17.64■□□□□ 0.41
SMC5-203ENST00000475540 POTEIP0CG38 1075 aa17.63■□□□□ 0.41
SMC5-203ENST00000475540 CHGAP10645 457 aaKnown RBP17.63■□□□□ 0.41
SMC5-203ENST00000475540 BCL11BQ9C0K0 894 aaPredicted RBP17.62■□□□□ 0.41
SMC5-203ENST00000475540 STK24Q9Y6E0 443 aa17.62■□□□□ 0.41
SMC5-203ENST00000475540 GOLGA2Q08379 1002 aa17.61■□□□□ 0.41
SMC5-203ENST00000475540 TRIM35Q9UPQ4 493 aa17.6■□□□□ 0.41
SMC5-203ENST00000475540 CABP2Q9NPB3 220 aa17.58■□□□□ 0.4
SMC5-203ENST00000475540 HS6ST3Q8IZP7 471 aa17.57■□□□□ 0.4
SMC5-203ENST00000475540 PELP1Q8IZL8 1130 aaKnown RBP17.54■□□□□ 0.4
SMC5-203ENST00000475540 MKRN3Q13064 507 aaKnown RBP17.53■□□□□ 0.4
SMC5-203ENST00000475540 SLC39A7Q92504 469 aa17.49■□□□□ 0.39
SMC5-203ENST00000475540 EFCAB3Q8N7B9 438 aa17.47■□□□□ 0.39
SMC5-203ENST00000475540 C7P10643 843 aa17.46■□□□□ 0.39
SMC5-203ENST00000475540 IER5LQ5T953 404 aa17.46■□□□□ 0.39
SMC5-203ENST00000475540 LHX8Q68G74 356 aa17.46■□□□□ 0.39
SMC5-203ENST00000475540 SOX12O15370 315 aa17.42■□□□□ 0.38
SMC5-203ENST00000475540 DNAJC5Q9H3Z4 198 aa17.4■□□□□ 0.38
SMC5-203ENST00000475540 METRNQ9UJH8 293 aa17.4■□□□□ 0.38
SMC5-203ENST00000475540 SEC24BO95487 1268 aa17.38■□□□□ 0.37
SMC5-203ENST00000475540 BBXQ8WY36 941 aaPredicted RBP17.37■□□□□ 0.37
SMC5-203ENST00000475540 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.37■□□□□ 0.37
SMC5-203ENST00000475540 OCEL1Q9H607 264 aa17.34■□□□□ 0.37
SMC5-203ENST00000475540 PLCG2P16885 1265 aa17.33■□□□□ 0.36
SMC5-203ENST00000475540 IRX5P78411 483 aaPredicted RBP17.33■□□□□ 0.36
SMC5-203ENST00000475540 NLRP6P59044 892 aa17.31■□□□□ 0.36
SMC5-203ENST00000475540 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.3■□□□□ 0.36
SMC5-203ENST00000475540 PHF8Q9UPP1 1060 aa17.3■□□□□ 0.36
SMC5-203ENST00000475540 COLQQ9Y215 455 aaPredicted RBP17.29■□□□□ 0.36
SMC5-203ENST00000475540 NKX1-1Q15270 411 aaPredicted RBP17.28■□□□□ 0.36
SMC5-203ENST00000475540 MFRPQ9BY79 579 aa17.28■□□□□ 0.36
SMC5-203ENST00000475540 ILDR1Q86SU0 546 aaPredicted RBP17.26■□□□□ 0.35
SMC5-203ENST00000475540 RYDENQ9NUL5 291 aaKnown RBP17.25■□□□□ 0.35
SMC5-203ENST00000475540 POTEFA5A3E0 1075 aa17.24■□□□□ 0.35
SMC5-203ENST00000475540 FBXO22Q8NEZ5 403 aa17.22■□□□□ 0.35
SMC5-203ENST00000475540 PDCD7Q8N8D1 485 aaKnown RBP17.21■□□□□ 0.35
SMC5-203ENST00000475540 MS4A4AQ96JQ5 239 aa17.17■□□□□ 0.34
SMC5-203ENST00000475540 GTPBP6O43824 516 aaPredicted RBP17.16■□□□□ 0.34
SMC5-203ENST00000475540 DPY19L2Q6NUT2 758 aa17.16■□□□□ 0.34
SMC5-203ENST00000475540 SPRYD3Q8NCJ5 442 aa17.16■□□□□ 0.34
SMC5-203ENST00000475540 L3MBTL3Q96JM7 780 aaPredicted RBP17.14■□□□□ 0.33
SMC5-203ENST00000475540 PAXIP1Q6ZW49 1069 aaPredicted RBP17.12■□□□□ 0.33
SMC5-203ENST00000475540 G3V3G9 751 aa17.11■□□□□ 0.33
SMC5-203ENST00000475540 CFAP44Q96MT7 982 aa17.11■□□□□ 0.33
SMC5-203ENST00000475540 POTEB2H3BUK9 544 aa17.08■□□□□ 0.32
SMC5-203ENST00000475540 BOLA1Q9Y3E2 137 aa17.06■□□□□ 0.32
SMC5-203ENST00000475540 PPP1R37O75864 691 aa17.04■□□□□ 0.32
SMC5-203ENST00000475540 MAMSTRQ6ZN01 415 aa16.99■□□□□ 0.31
SMC5-203ENST00000475540 POTEJP0CG39 1038 aa16.98■□□□□ 0.31
SMC5-203ENST00000475540 MICALL2Q8IY33 904 aa16.97■□□□□ 0.31
SMC5-203ENST00000475540 TMEM121BQ9BXQ6 578 aaPredicted RBP16.96■□□□□ 0.31
SMC5-203ENST00000475540 PLCB2Q00722 1185 aa16.95■□□□□ 0.3
SMC5-203ENST00000475540 SCUBE2Q9NQ36 999 aa16.95■□□□□ 0.3
SMC5-203ENST00000475540 C3orf67Q6ZVT6 689 aa16.94■□□□□ 0.3
SMC5-203ENST00000475540 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.92■□□□□ 0.3
SMC5-203ENST00000475540 OTUD5Q96G74 571 aa16.83■□□□□ 0.28
SMC5-203ENST00000475540 SLAIN1Q8ND83 568 aa16.78■□□□□ 0.28
SMC5-203ENST00000475540 PLSCR2Q9NRY7 297 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms