RNA–Protein interactions for RNA: ENST00000475344.1

LTN1-204, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 3

Gene LTN1, Length 696 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-204ENST00000475344 FAM212AQ96EL1 285 aa14.45□□□□□ -0.1
LTN1-204ENST00000475344 DCAF8Q5TAQ9 597 aa14.43□□□□□ -0.1
LTN1-204ENST00000475344 CCDC61Q9Y6R9 512 aa14.41□□□□□ -0.1
LTN1-204ENST00000475344 SPOCK2Q92563 424 aa14.4□□□□□ -0.1
LTN1-204ENST00000475344 CLCN6P51797 869 aa14.36□□□□□ -0.11
LTN1-204ENST00000475344 GALR2O43603 387 aaPredicted RBP14.35□□□□□ -0.11
LTN1-204ENST00000475344 KIF12Q96FN5 646 aa14.3□□□□□ -0.12
LTN1-204ENST00000475344 MS4A3Q96HJ5 214 aa14.3□□□□□ -0.12
LTN1-204ENST00000475344 CIZ1Q9ULV3 898 aaPredicted RBP14.3□□□□□ -0.12
LTN1-204ENST00000475344 GSE1Q14687 1217 aa14.29□□□□□ -0.12
LTN1-204ENST00000475344 PYGBP11216 843 aa14.28□□□□□ -0.12
LTN1-204ENST00000475344 MAP3K13O43283 966 aa14.27□□□□□ -0.13
LTN1-204ENST00000475344 DCBLD2Q96PD2 775 aa14.27□□□□□ -0.13
LTN1-204ENST00000475344 PCDHB13Q9Y5F0 798 aa14.23□□□□□ -0.13
LTN1-204ENST00000475344 POTEIP0CG38 1075 aa14.17□□□□□ -0.14
LTN1-204ENST00000475344 TRPC6Q9Y210 931 aa14.14□□□□□ -0.15
LTN1-204ENST00000475344 IFNL1Q8IU54 200 aa14.13□□□□□ -0.15
LTN1-204ENST00000475344 SGIP1Q9BQI5 828 aa14.12□□□□□ -0.15
LTN1-204ENST00000475344 PCDHB8Q9UN66 801 aa14.1□□□□□ -0.15
LTN1-204ENST00000475344 BMP2KQ9NSY1 1161 aaPredicted RBP14.05□□□□□ -0.16
LTN1-204ENST00000475344 ATMINO43313 823 aaPredicted RBP14.04□□□□□ -0.16
LTN1-204ENST00000475344 CHRM1P11229 460 aaPredicted RBP14.04□□□□□ -0.16
LTN1-204ENST00000475344 TIE1P35590 1138 aa14.03□□□□□ -0.16
LTN1-204ENST00000475344 ASTLQ6HA08 431 aaPredicted RBP14.03□□□□□ -0.16
LTN1-204ENST00000475344 ZNF467Q7Z7K2 595 aaPredicted RBP14.02□□□□□ -0.17
LTN1-204ENST00000475344 ATN1P54259 1190 aaPredicted RBP14.01□□□□□ -0.17
LTN1-204ENST00000475344 TRIM41Q8WV44 630 aa14.01□□□□□ -0.17
LTN1-204ENST00000475344 PELP1Q8IZL8 1130 aaKnown RBP14□□□□□ -0.17
LTN1-204ENST00000475344 TTLL13PA6NNM8 815 aa13.99□□□□□ -0.17
LTN1-204ENST00000475344 TMEM106CQ9BVX2 250 aa13.99□□□□□ -0.17
LTN1-204ENST00000475344 ECM2O94769 699 aaPredicted RBP13.94□□□□□ -0.18
LTN1-204ENST00000475344 TRIM35Q9UPQ4 493 aa13.93□□□□□ -0.18
LTN1-204ENST00000475344 SLC39A7Q92504 469 aa13.91□□□□□ -0.18
LTN1-204ENST00000475344 PSEN1P49768 467 aa13.9□□□□□ -0.18
LTN1-204ENST00000475344 METRNQ9UJH8 293 aa13.9□□□□□ -0.18
LTN1-204ENST00000475344 PKD2Q13563 968 aa13.89□□□□□ -0.19
LTN1-204ENST00000475344 PDAP1Q13442 181 aaKnown RBP13.87□□□□□ -0.19
LTN1-204ENST00000475344 C7P10643 843 aa13.86□□□□□ -0.19
LTN1-204ENST00000475344 RNF25Q96BH1 459 aaPredicted RBP13.86□□□□□ -0.19
LTN1-204ENST00000475344 RIOK3O14730 519 aaKnown RBP13.85□□□□□ -0.19
LTN1-204ENST00000475344 LHX8Q68G74 356 aa13.84□□□□□ -0.19
LTN1-204ENST00000475344 GOLGA2Q08379 1002 aa13.83□□□□□ -0.2
LTN1-204ENST00000475344 SEC24BO95487 1268 aa13.81□□□□□ -0.2
LTN1-204ENST00000475344 RGL2O15211 777 aa13.78□□□□□ -0.2
LTN1-204ENST00000475344 CABP2Q9NPB3 220 aa13.77□□□□□ -0.21
LTN1-204ENST00000475344 VGFO15240 615 aaPredicted RBP13.76□□□□□ -0.21
LTN1-204ENST00000475344 IER5LQ5T953 404 aa13.76□□□□□ -0.21
LTN1-204ENST00000475344 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.75□□□□□ -0.21
LTN1-204ENST00000475344 MKRN3Q13064 507 aaKnown RBP13.75□□□□□ -0.21
LTN1-204ENST00000475344 ZFP91Q96JP5 570 aaPredicted RBP13.75□□□□□ -0.21
LTN1-204ENST00000475344 POTEB2H3BUK9 544 aa13.74□□□□□ -0.21
LTN1-204ENST00000475344 COLQQ9Y215 455 aaPredicted RBP13.74□□□□□ -0.21
LTN1-204ENST00000475344 POTEFA5A3E0 1075 aa13.72□□□□□ -0.21
LTN1-204ENST00000475344 TAOK2Q9UL54 1235 aa13.72□□□□□ -0.21
LTN1-204ENST00000475344 PLCG2P16885 1265 aa13.71□□□□□ -0.21
LTN1-204ENST00000475344 IRX5P78411 483 aaPredicted RBP13.67□□□□□ -0.22
LTN1-204ENST00000475344 STK25O00506 426 aa13.66□□□□□ -0.22
LTN1-204ENST00000475344 BCL11BQ9C0K0 894 aaPredicted RBP13.65□□□□□ -0.22
LTN1-204ENST00000475344 OCEL1Q9H607 264 aa13.65□□□□□ -0.22
LTN1-204ENST00000475344 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.65□□□□□ -0.223e-6■■■□□ 15.8
LTN1-204ENST00000475344 STK24Q9Y6E0 443 aa13.65□□□□□ -0.22
LTN1-204ENST00000475344 EFCAB3Q8N7B9 438 aa13.64□□□□□ -0.23
LTN1-204ENST00000475344 POTEJP0CG39 1038 aa13.61□□□□□ -0.23
LTN1-204ENST00000475344 DCAF8L2P0C7V8 631 aa13.59□□□□□ -0.23
LTN1-204ENST00000475344 OTUD5Q96G74 571 aa13.57□□□□□ -0.24
LTN1-204ENST00000475344 PDCD7Q8N8D1 485 aaKnown RBP13.56□□□□□ -0.24
LTN1-204ENST00000475344 SCUBE2Q9NQ36 999 aa13.56□□□□□ -0.24
LTN1-204ENST00000475344 MAMSTRQ6ZN01 415 aa13.54□□□□□ -0.24
LTN1-204ENST00000475344 CHGAP10645 457 aaKnown RBP13.52□□□□□ -0.25
LTN1-204ENST00000475344 AMER1Q5JTC6 1135 aaPredicted RBP13.52□□□□□ -0.25
LTN1-204ENST00000475344 DPY19L2Q6NUT2 758 aa13.51□□□□□ -0.25
LTN1-204ENST00000475344 PHF8Q9UPP1 1060 aa13.5□□□□□ -0.25
LTN1-204ENST00000475344 SOX12O15370 315 aa13.49□□□□□ -0.25
LTN1-204ENST00000475344 RTN4Q9NQC3 1192 aaKnown RBP13.49□□□□□ -0.25
LTN1-204ENST00000475344 G3V3G9 751 aa13.46□□□□□ -0.25
LTN1-204ENST00000475344 ILDR1Q86SU0 546 aaPredicted RBP13.46□□□□□ -0.25
LTN1-204ENST00000475344 L3MBTL3Q96JM7 780 aaPredicted RBP13.46□□□□□ -0.25
LTN1-204ENST00000475344 HS6ST3Q8IZP7 471 aa13.44□□□□□ -0.26
LTN1-204ENST00000475344 NLRP6P59044 892 aa13.43□□□□□ -0.26
LTN1-204ENST00000475344 C3orf67Q6ZVT6 689 aa13.42□□□□□ -0.26
LTN1-204ENST00000475344 MFRPQ9BY79 579 aa13.41□□□□□ -0.26
LTN1-204ENST00000475344 MS4A4AQ96JQ5 239 aa13.4□□□□□ -0.26
LTN1-204ENST00000475344 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.4□□□□□ -0.26
LTN1-204ENST00000475344 BOLA1Q9Y3E2 137 aa13.4□□□□□ -0.26
LTN1-204ENST00000475344 SLAIN1Q8ND83 568 aa13.39□□□□□ -0.27
LTN1-204ENST00000475344 FBXO22Q8NEZ5 403 aa13.36□□□□□ -0.27
LTN1-204ENST00000475344 MICALL2Q8IY33 904 aa13.3□□□□□ -0.28
LTN1-204ENST00000475344 NKX1-1Q15270 411 aaPredicted RBP13.27□□□□□ -0.29
LTN1-204ENST00000475344 TMEM121BQ9BXQ6 578 aaPredicted RBP13.25□□□□□ -0.29
LTN1-204ENST00000475344 PPP1R37O75864 691 aa13.23□□□□□ -0.29
LTN1-204ENST00000475344 FAM163AQ96GL9 167 aaPredicted RBP13.23□□□□□ -0.29
LTN1-204ENST00000475344 DNAJC5Q9H3Z4 198 aa13.22□□□□□ -0.29
LTN1-204ENST00000475344 RYDENQ9NUL5 291 aaKnown RBP13.16□□□□□ -0.3
LTN1-204ENST00000475344 TMEM92Q6UXU6 159 aa13.14□□□□□ -0.31
LTN1-204ENST00000475344 SNPHO15079 494 aa13.12□□□□□ -0.31
LTN1-204ENST00000475344 GTPBP6O43824 516 aaPredicted RBP13.11□□□□□ -0.31
LTN1-204ENST00000475344 BBXQ8WY36 941 aaPredicted RBP13.1□□□□□ -0.31
LTN1-204ENST00000475344 ST18O60284 1047 aa13.06□□□□□ -0.32
LTN1-204ENST00000475344 C2orf72A6NCS6 295 aa13.05□□□□□ -0.32
LTN1-204ENST00000475344 LCE2DQ5TA82 110 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms