RNA–Protein interactions for RNA: ENST00000471297.1

SMNDC1-204, Transcript of survival motor neuron domain containing 1, humanhuman

TSL 3

Gene SMNDC1, Length 823 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-204ENST00000471297 NUBP1P53384 320 aa10.74□□□□□ -0.69
SMNDC1-204ENST00000471297 SUPT5HO00267 1087 aaKnown RBP10.7□□□□□ -0.7
SMNDC1-204ENST00000471297 UNC13AQ9UPW8 1703 aa10.7□□□□□ -0.7
SMNDC1-204ENST00000471297 DCAF8Q5TAQ9 597 aa10.69□□□□□ -0.7
SMNDC1-204ENST00000471297 CIZ1Q9ULV3 898 aaPredicted RBP10.69□□□□□ -0.7
SMNDC1-204ENST00000471297 PKD2Q13563 968 aa10.66□□□□□ -0.7
SMNDC1-204ENST00000471297 RASEFQ8IZ41 740 aa10.66□□□□□ -0.7
SMNDC1-204ENST00000471297 GSE1Q14687 1217 aa10.65□□□□□ -0.7
SMNDC1-204ENST00000471297 BICRAQ9NZM4 1560 aa10.65□□□□□ -0.71
SMNDC1-204ENST00000471297 FAM212AQ96EL1 285 aa10.63□□□□□ -0.71
SMNDC1-204ENST00000471297 TSPYL2Q9H2G4 693 aaPredicted RBP10.61□□□□□ -0.71
SMNDC1-204ENST00000471297 RSF1Q96T23 1441 aaPredicted RBP10.59□□□□□ -0.71
SMNDC1-204ENST00000471297 ECM2O94769 699 aaPredicted RBP10.59□□□□□ -0.71
SMNDC1-204ENST00000471297 CECR2Q9BXF3 1484 aa10.59□□□□□ -0.71
SMNDC1-204ENST00000471297 BAZ1AQ9NRL2 1556 aaPredicted RBP10.56□□□□□ -0.72
SMNDC1-204ENST00000471297 PAK3O75914 559 aaPredicted RBP10.54□□□□□ -0.72
SMNDC1-204ENST00000471297 TRIM41Q8WV44 630 aa10.54□□□□□ -0.72
SMNDC1-204ENST00000471297 MROH2BQ7Z745 1585 aa10.53□□□□□ -0.72
SMNDC1-204ENST00000471297 CD44P16070 742 aaKnown RBP10.52□□□□□ -0.73
SMNDC1-204ENST00000471297 C19orf67A6NJJ6 358 aa10.51□□□□□ -0.73
SMNDC1-204ENST00000471297 PYGBP11216 843 aa10.5□□□□□ -0.73
SMNDC1-204ENST00000471297 POTEHQ6S545 545 aa10.5□□□□□ -0.73
SMNDC1-204ENST00000471297 ZRANB1Q9UGI0 708 aa10.5□□□□□ -0.73
SMNDC1-204ENST00000471297 HAX1O00165 279 aa10.49□□□□□ -0.73
SMNDC1-204ENST00000471297 CHRM1P11229 460 aaPredicted RBP10.49□□□□□ -0.73
SMNDC1-204ENST00000471297 CCDC61Q9Y6R9 512 aa10.49□□□□□ -0.73
SMNDC1-204ENST00000471297 SMARCA4P51532 1647 aa10.48□□□□□ -0.73
SMNDC1-204ENST00000471297 RGL2O15211 777 aa10.48□□□□□ -0.73
SMNDC1-204ENST00000471297 WIZO95785 1651 aa10.42□□□□□ -0.74
SMNDC1-204ENST00000471297 EVX2Q03828 476 aa10.41□□□□□ -0.74
SMNDC1-204ENST00000471297 RNF25Q96BH1 459 aaPredicted RBP10.4□□□□□ -0.74
SMNDC1-204ENST00000471297 KIF12Q96FN5 646 aa10.4□□□□□ -0.74
SMNDC1-204ENST00000471297 PHF12Q96QT6 1004 aa10.39□□□□□ -0.75
SMNDC1-204ENST00000471297 RIOK3O14730 519 aaKnown RBP10.38□□□□□ -0.75
SMNDC1-204ENST00000471297 MAP3K13O43283 966 aa10.38□□□□□ -0.75
SMNDC1-204ENST00000471297 PEG3Q9GZU2 1588 aa10.38□□□□□ -0.75
SMNDC1-204ENST00000471297 ZNF579Q8NAF0 562 aaKnown RBP10.37□□□□□ -0.75
SMNDC1-204ENST00000471297 PCDHB13Q9Y5F0 798 aa10.36□□□□□ -0.75
SMNDC1-204ENST00000471297 SMARCA2P51531 1590 aa10.35□□□□□ -0.75
SMNDC1-204ENST00000471297 TOP2AP11388 1531 aaKnown RBP10.35□□□□□ -0.75
SMNDC1-204ENST00000471297 SGIP1Q9BQI5 828 aa10.35□□□□□ -0.75
SMNDC1-204ENST00000471297 PCDHB8Q9UN66 801 aa10.35□□□□□ -0.75
SMNDC1-204ENST00000471297 ATAD2BQ9ULI0 1458 aa10.35□□□□□ -0.75
SMNDC1-204ENST00000471297 EIF4G1Q04637 1599 aaKnown RBP10.35□□□□□ -0.75
SMNDC1-204ENST00000471297 ZNF467Q7Z7K2 595 aaPredicted RBP10.34□□□□□ -0.75
SMNDC1-204ENST00000471297 TAOK2Q9UL54 1235 aa10.34□□□□□ -0.75
SMNDC1-204ENST00000471297 IFNL1Q8IU54 200 aa10.32□□□□□ -0.76
SMNDC1-204ENST00000471297 VGFO15240 615 aaPredicted RBP10.31□□□□□ -0.76
SMNDC1-204ENST00000471297 NCAPD3P42695 1498 aa10.3□□□□□ -0.76
SMNDC1-204ENST00000471297 CHGAP10645 457 aaKnown RBP10.29□□□□□ -0.76
SMNDC1-204ENST00000471297 BAZ1BQ9UIG0 1483 aaKnown RBP10.28□□□□□ -0.76
SMNDC1-204ENST00000471297 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.27□□□□□ -0.77
SMNDC1-204ENST00000471297 CLCN6P51797 869 aa10.27□□□□□ -0.77
SMNDC1-204ENST00000471297 ZFP91Q96JP5 570 aaPredicted RBP10.27□□□□□ -0.77
SMNDC1-204ENST00000471297 PDAP1Q13442 181 aaKnown RBP10.26□□□□□ -0.77
SMNDC1-204ENST00000471297 MS4A3Q96HJ5 214 aa10.26□□□□□ -0.77
SMNDC1-204ENST00000471297 CCDC88BA6NC98 1476 aa10.25□□□□□ -0.77
SMNDC1-204ENST00000471297 PSEN1P49768 467 aa10.25□□□□□ -0.77
SMNDC1-204ENST00000471297 HMGXB3Q12766 1538 aa10.24□□□□□ -0.77
SMNDC1-204ENST00000471297 STK25O00506 426 aa10.24□□□□□ -0.77
SMNDC1-204ENST00000471297 GALR2O43603 387 aaPredicted RBP10.23□□□□□ -0.77
SMNDC1-204ENST00000471297 HS6ST3Q8IZP7 471 aa10.23□□□□□ -0.77
SMNDC1-204ENST00000471297 STK24Q9Y6E0 443 aa10.22□□□□□ -0.77
SMNDC1-204ENST00000471297 GABBR2O75899 941 aa10.21□□□□□ -0.77
SMNDC1-204ENST00000471297 BBXQ8WY36 941 aaPredicted RBP10.21□□□□□ -0.77
SMNDC1-204ENST00000471297 BCL11BQ9C0K0 894 aaPredicted RBP10.21□□□□□ -0.77
SMNDC1-204ENST00000471297 TRPC6Q9Y210 931 aa10.21□□□□□ -0.77
SMNDC1-204ENST00000471297 CC2D2AQ9P2K1 1620 aa10.19□□□□□ -0.78
SMNDC1-204ENST00000471297 TMEM106CQ9BVX2 250 aa10.16□□□□□ -0.78
SMNDC1-204ENST00000471297 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.16□□□□□ -0.78
SMNDC1-204ENST00000471297 TIE1P35590 1138 aa10.15□□□□□ -0.78
SMNDC1-204ENST00000471297 SP7Q8TDD2 431 aaPredicted RBP10.15□□□□□ -0.78
SMNDC1-204ENST00000471297 DNAJC5Q9H3Z4 198 aa10.15□□□□□ -0.78
SMNDC1-204ENST00000471297 CABP2Q9NPB3 220 aa10.12□□□□□ -0.79
SMNDC1-204ENST00000471297 BMP2KQ9NSY1 1161 aaPredicted RBP10.12□□□□□ -0.79
SMNDC1-204ENST00000471297 TTLL13PA6NNM8 815 aa10.11□□□□□ -0.79
SMNDC1-204ENST00000471297 NKX1-1Q15270 411 aaPredicted RBP10.1□□□□□ -0.79
SMNDC1-204ENST00000471297 PAXIP1Q6ZW49 1069 aaPredicted RBP10.09□□□□□ -0.79
SMNDC1-204ENST00000471297 EFCAB3Q8N7B9 438 aa10.08□□□□□ -0.8
SMNDC1-204ENST00000471297 SPRYD3Q8NCJ5 442 aa10.08□□□□□ -0.8
SMNDC1-204ENST00000471297 CFAP44Q96MT7 982 aa10.08□□□□□ -0.8
SMNDC1-204ENST00000471297 DCBLD2Q96PD2 775 aa10.08□□□□□ -0.8
SMNDC1-204ENST00000471297 PLCB2Q00722 1185 aa10.07□□□□□ -0.8
SMNDC1-204ENST00000471297 GOLGA2Q08379 1002 aa10.07□□□□□ -0.8
SMNDC1-204ENST00000471297 ATMINO43313 823 aaPredicted RBP10.06□□□□□ -0.8
SMNDC1-204ENST00000471297 ATN1P54259 1190 aaPredicted RBP10.06□□□□□ -0.8
SMNDC1-204ENST00000471297 ASTLQ6HA08 431 aaPredicted RBP10.05□□□□□ -0.8
SMNDC1-204ENST00000471297 TRIM35Q9UPQ4 493 aa10.05□□□□□ -0.8
SMNDC1-204ENST00000471297 SOX12O15370 315 aa10.04□□□□□ -0.8
SMNDC1-204ENST00000471297 MKRN3Q13064 507 aaKnown RBP10.04□□□□□ -0.8
SMNDC1-204ENST00000471297 CFTRP13569 1480 aa10.04□□□□□ -0.8
SMNDC1-204ENST00000471297 CADPSQ9ULU8 1353 aa10.03□□□□□ -0.8
SMNDC1-204ENST00000471297 GTPBP6O43824 516 aaPredicted RBP10.03□□□□□ -0.8
SMNDC1-204ENST00000471297 MFRPQ9BY79 579 aa10□□□□□ -0.81
SMNDC1-204ENST00000471297 PHF8Q9UPP1 1060 aa10□□□□□ -0.81
SMNDC1-204ENST00000471297 POTEIP0CG38 1075 aa9.99□□□□□ -0.81
SMNDC1-204ENST00000471297 PELP1Q8IZL8 1130 aaKnown RBP9.99□□□□□ -0.81
SMNDC1-204ENST00000471297 RYDENQ9NUL5 291 aaKnown RBP9.99□□□□□ -0.81
SMNDC1-204ENST00000471297 NLRP6P59044 892 aa9.98□□□□□ -0.81
SMNDC1-204ENST00000471297 WRNQ14191 1432 aaPredicted RBP eCLIP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms