RNA–Protein interactions for RNA: ENST00000449476.6

CTC1-202, Transcript of CST telomere replication complex component 1, humanhuman

TSL 2

Gene CTC1, Length 4,797 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1-202ENST00000449476 SOGA1O94964 1423 aa14.09□□□□□ -0.15
CTC1-202ENST00000449476 CCDC136Q96JN2 1154 aa14.05□□□□□ -0.16
CTC1-202ENST00000449476 MROH2BQ7Z745 1585 aa14.05□□□□□ -0.16
CTC1-202ENST00000449476 SLC24A1O60721 1099 aa14.04□□□□□ -0.16
CTC1-202ENST00000449476 IRX6P78412 446 aaPredicted RBP14.03□□□□□ -0.16
CTC1-202ENST00000449476 NPM1P06748 294 aaKnown RBP eCLIP14.02□□□□□ -0.16
CTC1-202ENST00000449476 SIN3AQ96ST3 1273 aa14.01□□□□□ -0.17
CTC1-202ENST00000449476 PLEKHD1A6NEE1 506 aa13.99□□□□□ -0.17
CTC1-202ENST00000449476 STAG3Q9UJ98 1225 aa13.98□□□□□ -0.17
CTC1-202ENST00000449476 CCDC88BA6NC98 1476 aa13.98□□□□□ -0.17
CTC1-202ENST00000449476 CCNB3Q8WWL7 1395 aa13.97□□□□□ -0.17
CTC1-202ENST00000449476 ESF1Q9H501 851 aaKnown RBP13.97□□□□□ -0.17
CTC1-202ENST00000449476 WDR43Q15061 677 aaKnown RBP eCLIP13.96□□□□□ -0.17
CTC1-202ENST00000449476 ABCC8Q09428 1581 aa13.95□□□□□ -0.18
CTC1-202ENST00000449476 CFDP1Q9UEE9 299 aaPredicted RBP13.95□□□□□ -0.18
CTC1-202ENST00000449476 VPS8Q8N3P4 1428 aa13.93□□□□□ -0.18
CTC1-202ENST00000449476 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.93□□□□□ -0.18
CTC1-202ENST00000449476 CARMIL1Q5VZK9 1371 aa13.93□□□□□ -0.18
CTC1-202ENST00000449476 RGL3Q3MIN7 710 aa13.92□□□□□ -0.18
CTC1-202ENST00000449476 KCNH8Q96L42 1107 aa13.92□□□□□ -0.18
CTC1-202ENST00000449476 CUX2O14529 1486 aa13.91□□□□□ -0.18
CTC1-202ENST00000449476 FHAD1B1AJZ9 1412 aa13.91□□□□□ -0.18
CTC1-202ENST00000449476 UPF2Q9HAU5 1272 aaKnown RBP13.9□□□□□ -0.19
CTC1-202ENST00000449476 KANK4Q5T7N3 995 aaPredicted RBP13.88□□□□□ -0.19
CTC1-202ENST00000449476 SUPT16HQ9Y5B9 1047 aaKnown RBP13.88□□□□□ -0.19
CTC1-202ENST00000449476 SENP3-EIF4A1A0A087X0R7 540 aa13.87□□□□□ -0.19
CTC1-202ENST00000449476 NBR1Q14596 966 aa13.85□□□□□ -0.19
CTC1-202ENST00000449476 CARD11Q9BXL7 1154 aa13.85□□□□□ -0.19
CTC1-202ENST00000449476 HSP90AA1P07900 732 aaKnown RBP13.84□□□□□ -0.19
CTC1-202ENST00000449476 TIMELESSQ9UNS1 1208 aa13.84□□□□□ -0.19
CTC1-202ENST00000449476 WIZO95785 1651 aa13.83□□□□□ -0.2
CTC1-202ENST00000449476 PLPPR3Q6T4P5 718 aa13.81□□□□□ -0.2
CTC1-202ENST00000449476 SETD5Q9C0A6 1442 aa13.8□□□□□ -0.2
CTC1-202ENST00000449476 TOP2AP11388 1531 aaKnown RBP13.78□□□□□ -0.2
CTC1-202ENST00000449476 SMARCA2P51531 1590 aa13.77□□□□□ -0.21
CTC1-202ENST00000449476 SENP3Q9H4L4 574 aaPredicted RBP13.77□□□□□ -0.21
CTC1-202ENST00000449476 KNSTRNQ9Y448 316 aa13.77□□□□□ -0.21
CTC1-202ENST00000449476 CDCA8Q53HL2 280 aa13.76□□□□□ -0.21
CTC1-202ENST00000449476 ARHGAP35Q9NRY4 1499 aa13.74□□□□□ -0.21
CTC1-202ENST00000449476 EIF4G1Q04637 1599 aaKnown RBP13.74□□□□□ -0.21
CTC1-202ENST00000449476 RAB3GAP2Q9H2M9 1393 aa13.74□□□□□ -0.21
CTC1-202ENST00000449476 PPP4R2Q9NY27 417 aa13.73□□□□□ -0.21
CTC1-202ENST00000449476 CCER2I3L3R5 266 aa13.72□□□□□ -0.21
CTC1-202ENST00000449476 ANP32BQ92688 251 aaKnown RBP13.72□□□□□ -0.21
CTC1-202ENST00000449476 DCAF11Q8TEB1 546 aa13.7□□□□□ -0.22
CTC1-202ENST00000449476 HSPA5P11021 654 aaKnown RBP13.7□□□□□ -0.22
CTC1-202ENST00000449476 ERCC6Q03468 1493 aa13.69□□□□□ -0.22
CTC1-202ENST00000449476 TDRD9Q8NDG6 1382 aaKnown RBP13.68□□□□□ -0.22
CTC1-202ENST00000449476 CFAP53Q96M91 514 aa13.68□□□□□ -0.22
CTC1-202ENST00000449476 RAPGEF2Q9Y4G8 1499 aa13.68□□□□□ -0.22
CTC1-202ENST00000449476 EIF5BO60841 1220 aaKnown RBP13.67□□□□□ -0.22
CTC1-202ENST00000449476 FOXD1Q16676 465 aa13.67□□□□□ -0.22
CTC1-202ENST00000449476 ANP32EQ9BTT0 268 aa13.67□□□□□ -0.22
CTC1-202ENST00000449476 PPP1R15AO75807 674 aaPredicted RBP13.67□□□□□ -0.22
CTC1-202ENST00000449476 RUSC2Q8N2Y8 1516 aa13.66□□□□□ -0.22
CTC1-202ENST00000449476 FMN1Q68DA7 1419 aa13.66□□□□□ -0.22
CTC1-202ENST00000449476 CC2D1BQ5T0F9 858 aaKnown RBP13.66□□□□□ -0.22
CTC1-202ENST00000449476 B4GALNT3Q6L9W6 998 aa13.66□□□□□ -0.22
CTC1-202ENST00000449476 NEUROD2Q15784 382 aa13.65□□□□□ -0.22
CTC1-202ENST00000449476 DDRGK1Q96HY6 314 aa13.65□□□□□ -0.22
CTC1-202ENST00000449476 ARXQ96QS3 562 aa13.65□□□□□ -0.22
CTC1-202ENST00000449476 MYH16Q9H6N6 1097 aa13.64□□□□□ -0.23
CTC1-202ENST00000449476 PKD2Q13563 968 aa13.64□□□□□ -0.23
CTC1-202ENST00000449476 MPHOSPH9Q99550 1183 aa13.63□□□□□ -0.23
CTC1-202ENST00000449476 ATAD2BQ9ULI0 1458 aa13.63□□□□□ -0.23
CTC1-202ENST00000449476 TMF1P82094 1093 aa13.62□□□□□ -0.23
CTC1-202ENST00000449476 CADPSQ9ULU8 1353 aa13.61□□□□□ -0.23
CTC1-202ENST00000449476 BECN1Q14457 450 aa13.61□□□□□ -0.23
CTC1-202ENST00000449476 SMARCA4P51532 1647 aa13.61□□□□□ -0.23
CTC1-202ENST00000449476 PDS5BQ9NTI5 1447 aa13.6□□□□□ -0.23
CTC1-202ENST00000449476 PPM1GO15355 546 aaPredicted RBP13.6□□□□□ -0.23
CTC1-202ENST00000449476 FHOD3Q2V2M9 1422 aa13.6□□□□□ -0.23
CTC1-202ENST00000449476 TNNT2P45379 298 aaPredicted RBP13.59□□□□□ -0.23
CTC1-202ENST00000449476 RGS3P49796 1198 aa13.57□□□□□ -0.24
CTC1-202ENST00000449476 DHX57Q6P158 1386 aaKnown RBP13.57□□□□□ -0.24
CTC1-202ENST00000449476 FTSJ3Q8IY81 847 aaKnown RBP13.57□□□□□ -0.24
CTC1-202ENST00000449476 FRAT1Q92837 279 aaPredicted RBP13.56□□□□□ -0.24
CTC1-202ENST00000449476 NUDCQ9Y266 331 aa13.56□□□□□ -0.24
CTC1-202ENST00000449476 L3MBTL2Q969R5 705 aa13.55□□□□□ -0.24
CTC1-202ENST00000449476 MAPK8IP3Q9UPT6 1336 aa13.55□□□□□ -0.24
CTC1-202ENST00000449476 POGKQ9P215 609 aa13.55□□□□□ -0.24
CTC1-202ENST00000449476 CARMIL2Q6F5E8 1435 aa13.55□□□□□ -0.24
CTC1-202ENST00000449476 NUP155O75694 1391 aa13.54□□□□□ -0.24
CTC1-202ENST00000449476 C14orf37Q86TY3 774 aa13.54□□□□□ -0.24
CTC1-202ENST00000449476 RBM19Q9Y4C8 960 aaKnown RBP13.53□□□□□ -0.24
CTC1-202ENST00000449476 PLEKHG5O94827 1062 aa13.52□□□□□ -0.24
CTC1-202ENST00000449476 NOP58Q9Y2X3 529 aaKnown RBP13.52□□□□□ -0.24
CTC1-202ENST00000449476 KANK1Q14678 1352 aa13.51□□□□□ -0.25
CTC1-202ENST00000449476 ZBTB7CA1YPR0 619 aa13.51□□□□□ -0.25
CTC1-202ENST00000449476 LAS1LQ9Y4W2 734 aaKnown RBP13.51□□□□□ -0.25
CTC1-202ENST00000449476 ANKRD30AQ9BXX3 1397 aa13.51□□□□□ -0.25
CTC1-202ENST00000449476 U2SURPO15042 1029 aaKnown RBP13.51□□□□□ -0.25
CTC1-202ENST00000449476 ARID4BQ4LE39 1312 aaPredicted RBP13.49□□□□□ -0.25
CTC1-202ENST00000449476 KTN1Q86UP2 1357 aaKnown RBP13.49□□□□□ -0.25
CTC1-202ENST00000449476 ERICH6BQ5W0A0 696 aa13.48□□□□□ -0.25
CTC1-202ENST00000449476 ROCK2O75116 1388 aaKnown RBP13.47□□□□□ -0.25
CTC1-202ENST00000449476 RALBP1Q15311 655 aa13.46□□□□□ -0.25
CTC1-202ENST00000449476 MORC1Q86VD1 984 aa13.46□□□□□ -0.25
CTC1-202ENST00000449476 EFCAB2Q5VUJ9 269 aa13.45□□□□□ -0.26
CTC1-202ENST00000449476 GGT6Q6P531 493 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms