RNA–Protein interactions for RNA: ENST00000441799.1

HMGB3P9-201, Transcript of high mobility group box 3 pseudogene 9, humanhuman

BASIC

Gene HMGB3P9, Length 583 nt, Biotype processed pseudogene.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P9-201ENST00000441799 OTUD5Q96G74 571 aa11.26□□□□□ -0.61
HMGB3P9-201ENST00000441799 ATMINO43313 823 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P9-201ENST00000441799 RASEFQ8IZ41 740 aa11.24□□□□□ -0.61
HMGB3P9-201ENST00000441799 KIF12Q96FN5 646 aa11.24□□□□□ -0.61
HMGB3P9-201ENST00000441799 PLEKHG5O94827 1062 aa11.18□□□□□ -0.62
HMGB3P9-201ENST00000441799 TRPC6Q9Y210 931 aa11.18□□□□□ -0.62
HMGB3P9-201ENST00000441799 POTEJP0CG39 1038 aa11.17□□□□□ -0.62
HMGB3P9-201ENST00000441799 FKBP8Q14318 412 aa11.17□□□□□ -0.62
HMGB3P9-201ENST00000441799 METRNQ9UJH8 293 aa11.17□□□□□ -0.62
HMGB3P9-201ENST00000441799 MAP3K13O43283 966 aa11.16□□□□□ -0.62
HMGB3P9-201ENST00000441799 C7P10643 843 aa11.15□□□□□ -0.62
HMGB3P9-201ENST00000441799 ATN1P54259 1190 aaPredicted RBP11.15□□□□□ -0.62
HMGB3P9-201ENST00000441799 PLCD3Q8N3E9 789 aa11.15□□□□□ -0.62
HMGB3P9-201ENST00000441799 SLC39A7Q92504 469 aa11.14□□□□□ -0.63
HMGB3P9-201ENST00000441799 NUBP1P53384 320 aa11.13□□□□□ -0.63
HMGB3P9-201ENST00000441799 BMP2KQ9NSY1 1161 aaPredicted RBP11.13□□□□□ -0.63
HMGB3P9-201ENST00000441799 POTEFA5A3E0 1075 aa11.08□□□□□ -0.64
HMGB3P9-201ENST00000441799 TIE1P35590 1138 aa11.06□□□□□ -0.64
HMGB3P9-201ENST00000441799 ZBTB47Q9UFB7 747 aaPredicted RBP11.04□□□□□ -0.64
HMGB3P9-201ENST00000441799 TTLL13PA6NNM8 815 aa11.03□□□□□ -0.64
HMGB3P9-201ENST00000441799 SGIP1Q9BQI5 828 aa11.01□□□□□ -0.65
HMGB3P9-201ENST00000441799 PCDHB13Q9Y5F0 798 aa11□□□□□ -0.65
HMGB3P9-201ENST00000441799 COLQQ9Y215 455 aaPredicted RBP10.99□□□□□ -0.65
HMGB3P9-201ENST00000441799 IFNL1Q8IU54 200 aa10.98□□□□□ -0.65
HMGB3P9-201ENST00000441799 MAMSTRQ6ZN01 415 aa10.97□□□□□ -0.65
HMGB3P9-201ENST00000441799 FAM212AQ96EL1 285 aa10.96□□□□□ -0.65
HMGB3P9-201ENST00000441799 TRIM35Q9UPQ4 493 aa10.94□□□□□ -0.66
HMGB3P9-201ENST00000441799 POTEMA6NI47 508 aa10.92□□□□□ -0.66
HMGB3P9-201ENST00000441799 POTEGQ6S5H5 508 aa10.91□□□□□ -0.66
HMGB3P9-201ENST00000441799 SCUBE2Q9NQ36 999 aa10.91□□□□□ -0.66
HMGB3P9-201ENST00000441799 FBXO3Q9UK99 471 aa10.91□□□□□ -0.66
HMGB3P9-201ENST00000441799 LCE2DQ5TA82 110 aaPredicted RBP10.9□□□□□ -0.66
HMGB3P9-201ENST00000441799 SEC24BO95487 1268 aa10.89□□□□□ -0.67
HMGB3P9-201ENST00000441799 DCAF8Q5TAQ9 597 aa10.89□□□□□ -0.67
HMGB3P9-201ENST00000441799 PLSCR2Q9NRY7 297 aa10.89□□□□□ -0.67
HMGB3P9-201ENST00000441799 IER5LQ5T953 404 aa10.88□□□□□ -0.67
HMGB3P9-201ENST00000441799 TMEM106CQ9BVX2 250 aa10.88□□□□□ -0.67
HMGB3P9-201ENST00000441799 PYGBP11216 843 aa10.87□□□□□ -0.67
HMGB3P9-201ENST00000441799 VASPP50552 380 aaPredicted RBP10.84□□□□□ -0.67
HMGB3P9-201ENST00000441799 FAM163AQ96GL9 167 aaPredicted RBP10.84□□□□□ -0.67
HMGB3P9-201ENST00000441799 PCDHB8Q9UN66 801 aa10.82□□□□□ -0.68
HMGB3P9-201ENST00000441799 IRX5P78411 483 aaPredicted RBP10.8□□□□□ -0.68
HMGB3P9-201ENST00000441799 KLHL34Q8N239 644 aa10.78□□□□□ -0.68
HMGB3P9-201ENST00000441799 PLCG2P16885 1265 aa10.75□□□□□ -0.69
HMGB3P9-201ENST00000441799 GSE1Q14687 1217 aa10.72□□□□□ -0.69
HMGB3P9-201ENST00000441799 PCDH10Q9P2E7 1040 aa10.72□□□□□ -0.69
HMGB3P9-201ENST00000441799 CHRM1P11229 460 aaPredicted RBP10.71□□□□□ -0.69
HMGB3P9-201ENST00000441799 SLAIN1Q8ND83 568 aa10.71□□□□□ -0.69
HMGB3P9-201ENST00000441799 OCEL1Q9H607 264 aa10.71□□□□□ -0.69
HMGB3P9-201ENST00000441799 IFNLR1Q8IU57 520 aaPredicted RBP10.68□□□□□ -0.7
HMGB3P9-201ENST00000441799 ZNF467Q7Z7K2 595 aaPredicted RBP10.65□□□□□ -0.7
HMGB3P9-201ENST00000441799 ST18O60284 1047 aa10.63□□□□□ -0.71
HMGB3P9-201ENST00000441799 PDCD7Q8N8D1 485 aaKnown RBP10.63□□□□□ -0.71
HMGB3P9-201ENST00000441799 PSEN1P49768 467 aa10.61□□□□□ -0.71
HMGB3P9-201ENST00000441799 SPOCK2Q92563 424 aa10.61□□□□□ -0.71
HMGB3P9-201ENST00000441799 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
HMGB3P9-201ENST00000441799 CDAN1Q8IWY9 1227 aa10.56□□□□□ -0.72
HMGB3P9-201ENST00000441799 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.56□□□□□ -0.72
HMGB3P9-201ENST00000441799 CIZ1Q9ULV3 898 aaPredicted RBP10.56□□□□□ -0.72
HMGB3P9-201ENST00000441799 PDAP1Q13442 181 aaKnown RBP10.54□□□□□ -0.72
HMGB3P9-201ENST00000441799 ILDR1Q86SU0 546 aaPredicted RBP10.54□□□□□ -0.72
HMGB3P9-201ENST00000441799 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.54□□□□□ -0.72
HMGB3P9-201ENST00000441799 GOLGA2Q08379 1002 aa10.53□□□□□ -0.72
HMGB3P9-201ENST00000441799 DPY19L2Q6NUT2 758 aa10.51□□□□□ -0.73
HMGB3P9-201ENST00000441799 L3MBTL3Q96JM7 780 aaPredicted RBP10.5□□□□□ -0.73
HMGB3P9-201ENST00000441799 CABP2Q9NPB3 220 aa10.48□□□□□ -0.73
HMGB3P9-201ENST00000441799 SNPHO15079 494 aa10.47□□□□□ -0.73
HMGB3P9-201ENST00000441799 C3orf67Q6ZVT6 689 aa10.46□□□□□ -0.73
HMGB3P9-201ENST00000441799 TMEM121BQ9BXQ6 578 aaPredicted RBP10.46□□□□□ -0.73
HMGB3P9-201ENST00000441799 MARVELD3Q96A59 401 aa10.45□□□□□ -0.74
HMGB3P9-201ENST00000441799 EFCAB3Q8N7B9 438 aa10.38□□□□□ -0.75
HMGB3P9-201ENST00000441799 TRIM41Q8WV44 630 aa10.38□□□□□ -0.75
HMGB3P9-201ENST00000441799 BOLA1Q9Y3E2 137 aa10.38□□□□□ -0.75
HMGB3P9-201ENST00000441799 POTEB3A0JP26 581 aa10.36□□□□□ -0.75
HMGB3P9-201ENST00000441799 POTEBQ6S5H4 581 aa10.36□□□□□ -0.75
HMGB3P9-201ENST00000441799 RNF25Q96BH1 459 aaPredicted RBP10.34□□□□□ -0.75
HMGB3P9-201ENST00000441799 HOXB3P14651 431 aaPredicted RBP10.33□□□□□ -0.76
HMGB3P9-201ENST00000441799 SPNS2Q8IVW8 549 aa10.32□□□□□ -0.76
HMGB3P9-201ENST00000441799 EMP3P54852 163 aa10.31□□□□□ -0.76
HMGB3P9-201ENST00000441799 RIOK3O14730 519 aaKnown RBP10.29□□□□□ -0.76
HMGB3P9-201ENST00000441799 MMRN1Q13201 1228 aa10.29□□□□□ -0.76
HMGB3P9-201ENST00000441799 G3V3G9 751 aa10.28□□□□□ -0.76
HMGB3P9-201ENST00000441799 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.27□□□□□ -0.77
HMGB3P9-201ENST00000441799 FAM205CA6NFA0 338 aa10.27□□□□□ -0.77
HMGB3P9-201ENST00000441799 ZFP91Q96JP5 570 aaPredicted RBP10.27□□□□□ -0.77
HMGB3P9-201ENST00000441799 HS3ST6Q96QI5 342 aa10.27□□□□□ -0.77
HMGB3P9-201ENST00000441799 MS4A4AQ96JQ5 239 aa10.26□□□□□ -0.77
HMGB3P9-201ENST00000441799 KRTAP3-3Q9BYR6 98 aa10.26□□□□□ -0.77
HMGB3P9-201ENST00000441799 KRTAP3-2Q9BYR7 98 aa10.26□□□□□ -0.77
HMGB3P9-201ENST00000441799 TMEM92Q6UXU6 159 aa10.25□□□□□ -0.77
HMGB3P9-201ENST00000441799 SOX12O15370 315 aa10.24□□□□□ -0.77
HMGB3P9-201ENST00000441799 MICALL2Q8IY33 904 aa10.23□□□□□ -0.77
HMGB3P9-201ENST00000441799 VGFO15240 615 aaPredicted RBP10.22□□□□□ -0.77
HMGB3P9-201ENST00000441799 PHF8Q9UPP1 1060 aa10.22□□□□□ -0.77
HMGB3P9-201ENST00000441799 HOXB1P14653 301 aaPredicted RBP10.21□□□□□ -0.77
HMGB3P9-201ENST00000441799 DOK7Q18PE1 504 aa10.18□□□□□ -0.78
HMGB3P9-201ENST00000441799 ZNF710Q8N1W2 664 aa10.17□□□□□ -0.78
HMGB3P9-201ENST00000441799 FBXO22Q8NEZ5 403 aa10.14□□□□□ -0.79
HMGB3P9-201ENST00000441799 BCL11BQ9C0K0 894 aaPredicted RBP10.13□□□□□ -0.79
HMGB3P9-201ENST00000441799 ERBB3P21860 1342 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms