RNA–Protein interactions for RNA: ENST00000438745.1

HMGB3P12-201, Transcript of high mobility group box 3 pseudogene 12, humanhuman

BASIC

Gene HMGB3P12, Length 556 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P12-201ENST00000438745 CLCN6P51797 869 aa10.41□□□□□ -0.74
HMGB3P12-201ENST00000438745 KLHL34Q8N239 644 aa10.41□□□□□ -0.74
HMGB3P12-201ENST00000438745 LHX8Q68G74 356 aa10.39□□□□□ -0.75
HMGB3P12-201ENST00000438745 CCDC61Q9Y6R9 512 aa10.39□□□□□ -0.75
HMGB3P12-201ENST00000438745 TSPYL2Q9H2G4 693 aaPredicted RBP10.38□□□□□ -0.75
HMGB3P12-201ENST00000438745 DCBLD2Q96PD2 775 aa10.36□□□□□ -0.75
HMGB3P12-201ENST00000438745 SPOCK2Q92563 424 aa10.35□□□□□ -0.75
HMGB3P12-201ENST00000438745 FAM212AQ96EL1 285 aa10.32□□□□□ -0.76
HMGB3P12-201ENST00000438745 DCAF8Q5TAQ9 597 aa10.29□□□□□ -0.76
HMGB3P12-201ENST00000438745 KIF12Q96FN5 646 aa10.29□□□□□ -0.76
HMGB3P12-201ENST00000438745 MS4A3Q96HJ5 214 aa10.28□□□□□ -0.76
HMGB3P12-201ENST00000438745 GSE1Q14687 1217 aa10.27□□□□□ -0.77
HMGB3P12-201ENST00000438745 PELP1Q8IZL8 1130 aaKnown RBP10.26□□□□□ -0.77
HMGB3P12-201ENST00000438745 SGIP1Q9BQI5 828 aa10.25□□□□□ -0.77
HMGB3P12-201ENST00000438745 MAP3K13O43283 966 aa10.23□□□□□ -0.77
HMGB3P12-201ENST00000438745 CHRM1P11229 460 aaPredicted RBP10.23□□□□□ -0.77
HMGB3P12-201ENST00000438745 POTEB2H3BUK9 544 aa10.22□□□□□ -0.77
HMGB3P12-201ENST00000438745 TRPC6Q9Y210 931 aa10.19□□□□□ -0.78
HMGB3P12-201ENST00000438745 PYGBP11216 843 aa10.18□□□□□ -0.78
HMGB3P12-201ENST00000438745 CIZ1Q9ULV3 898 aaPredicted RBP10.17□□□□□ -0.78
HMGB3P12-201ENST00000438745 PCDHB13Q9Y5F0 798 aa10.15□□□□□ -0.78
HMGB3P12-201ENST00000438745 ATMINO43313 823 aaPredicted RBP10.14□□□□□ -0.79
HMGB3P12-201ENST00000438745 IFNL1Q8IU54 200 aa10.14□□□□□ -0.79
HMGB3P12-201ENST00000438745 ASTLQ6HA08 431 aaPredicted RBP10.13□□□□□ -0.79
HMGB3P12-201ENST00000438745 TRIM41Q8WV44 630 aa10.13□□□□□ -0.79
HMGB3P12-201ENST00000438745 ATN1P54259 1190 aaPredicted RBP10.11□□□□□ -0.79
HMGB3P12-201ENST00000438745 OTUD5Q96G74 571 aa10.11□□□□□ -0.79
HMGB3P12-201ENST00000438745 TIE1P35590 1138 aa10.09□□□□□ -0.79
HMGB3P12-201ENST00000438745 METRNQ9UJH8 293 aa10.08□□□□□ -0.8
HMGB3P12-201ENST00000438745 POTEJP0CG39 1038 aa10.07□□□□□ -0.8
HMGB3P12-201ENST00000438745 PKD2Q13563 968 aa10.07□□□□□ -0.8
HMGB3P12-201ENST00000438745 BMP2KQ9NSY1 1161 aaPredicted RBP10.07□□□□□ -0.8
HMGB3P12-201ENST00000438745 PCDHB8Q9UN66 801 aa10.07□□□□□ -0.8
HMGB3P12-201ENST00000438745 ZNF467Q7Z7K2 595 aaPredicted RBP10.06□□□□□ -0.8
HMGB3P12-201ENST00000438745 TTLL13PA6NNM8 815 aa10.03□□□□□ -0.8
HMGB3P12-201ENST00000438745 POTEFA5A3E0 1075 aa10.02□□□□□ -0.81
HMGB3P12-201ENST00000438745 SLC39A7Q92504 469 aa10.02□□□□□ -0.81
HMGB3P12-201ENST00000438745 C7P10643 843 aa10□□□□□ -0.81
HMGB3P12-201ENST00000438745 RNF25Q96BH1 459 aaPredicted RBP10□□□□□ -0.81
HMGB3P12-201ENST00000438745 TMEM106CQ9BVX2 250 aa9.98□□□□□ -0.81
HMGB3P12-201ENST00000438745 ECM2O94769 699 aaPredicted RBP9.97□□□□□ -0.81
HMGB3P12-201ENST00000438745 PSEN1P49768 467 aa9.96□□□□□ -0.82
HMGB3P12-201ENST00000438745 PDAP1Q13442 181 aaKnown RBP9.96□□□□□ -0.82
HMGB3P12-201ENST00000438745 RIOK3O14730 519 aaKnown RBP9.95□□□□□ -0.82
HMGB3P12-201ENST00000438745 TRIM35Q9UPQ4 493 aa9.95□□□□□ -0.82
HMGB3P12-201ENST00000438745 COLQQ9Y215 455 aaPredicted RBP9.95□□□□□ -0.82
HMGB3P12-201ENST00000438745 RGL2O15211 777 aa9.91□□□□□ -0.82
HMGB3P12-201ENST00000438745 IER5LQ5T953 404 aa9.91□□□□□ -0.82
HMGB3P12-201ENST00000438745 VGFO15240 615 aaPredicted RBP9.9□□□□□ -0.82
HMGB3P12-201ENST00000438745 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.86□□□□□ -0.83
HMGB3P12-201ENST00000438745 ZFP91Q96JP5 570 aaPredicted RBP9.86□□□□□ -0.83
HMGB3P12-201ENST00000438745 TAOK2Q9UL54 1235 aa9.86□□□□□ -0.83
HMGB3P12-201ENST00000438745 IRX5P78411 483 aaPredicted RBP9.85□□□□□ -0.83
HMGB3P12-201ENST00000438745 SEC24BO95487 1268 aa9.84□□□□□ -0.83
HMGB3P12-201ENST00000438745 ILDR1Q86SU0 546 aaPredicted RBP9.84□□□□□ -0.83
HMGB3P12-201ENST00000438745 CABP2Q9NPB3 220 aa9.82□□□□□ -0.84
HMGB3P12-201ENST00000438745 LCE2DQ5TA82 110 aaPredicted RBP9.81□□□□□ -0.84
HMGB3P12-201ENST00000438745 SCUBE2Q9NQ36 999 aa9.81□□□□□ -0.84
HMGB3P12-201ENST00000438745 MKRN3Q13064 507 aaKnown RBP9.8□□□□□ -0.84
HMGB3P12-201ENST00000438745 MAMSTRQ6ZN01 415 aa9.8□□□□□ -0.84
HMGB3P12-201ENST00000438745 OCEL1Q9H607 264 aa9.8□□□□□ -0.84
HMGB3P12-201ENST00000438745 POTEMA6NI47 508 aa9.79□□□□□ -0.84
HMGB3P12-201ENST00000438745 AMER1Q5JTC6 1135 aaPredicted RBP9.79□□□□□ -0.84
HMGB3P12-201ENST00000438745 GOLGA2Q08379 1002 aa9.78□□□□□ -0.84
HMGB3P12-201ENST00000438745 EFCAB3Q8N7B9 438 aa9.77□□□□□ -0.85
HMGB3P12-201ENST00000438745 BCL11BQ9C0K0 894 aaPredicted RBP9.77□□□□□ -0.85
HMGB3P12-201ENST00000438745 POTEGQ6S5H5 508 aa9.76□□□□□ -0.85
HMGB3P12-201ENST00000438745 PDCD7Q8N8D1 485 aaKnown RBP9.76□□□□□ -0.85
HMGB3P12-201ENST00000438745 FAM163AQ96GL9 167 aaPredicted RBP9.76□□□□□ -0.85
HMGB3P12-201ENST00000438745 SOX12O15370 315 aa9.75□□□□□ -0.85
HMGB3P12-201ENST00000438745 PLCG2P16885 1265 aa9.75□□□□□ -0.85
HMGB3P12-201ENST00000438745 RTN4Q9NQC3 1192 aaKnown RBP9.75□□□□□ -0.85
HMGB3P12-201ENST00000438745 STK25O00506 426 aa9.74□□□□□ -0.85
HMGB3P12-201ENST00000438745 PLSCR2Q9NRY7 297 aa9.74□□□□□ -0.85
HMGB3P12-201ENST00000438745 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.74□□□□□ -0.85
HMGB3P12-201ENST00000438745 STK24Q9Y6E0 443 aa9.73□□□□□ -0.85
HMGB3P12-201ENST00000438745 HS6ST3Q8IZP7 471 aa9.71□□□□□ -0.86
HMGB3P12-201ENST00000438745 DNAJC5Q9H3Z4 198 aa9.71□□□□□ -0.86
HMGB3P12-201ENST00000438745 DPY19L2Q6NUT2 758 aa9.67□□□□□ -0.86
HMGB3P12-201ENST00000438745 SLAIN1Q8ND83 568 aa9.67□□□□□ -0.86
HMGB3P12-201ENST00000438745 FBXO22Q8NEZ5 403 aa9.67□□□□□ -0.86
HMGB3P12-201ENST00000438745 L3MBTL3Q96JM7 780 aaPredicted RBP9.66□□□□□ -0.86
HMGB3P12-201ENST00000438745 MS4A4AQ96JQ5 239 aa9.66□□□□□ -0.86
HMGB3P12-201ENST00000438745 MFRPQ9BY79 579 aa9.66□□□□□ -0.86
HMGB3P12-201ENST00000438745 PHF8Q9UPP1 1060 aa9.66□□□□□ -0.86
HMGB3P12-201ENST00000438745 CHGAP10645 457 aaKnown RBP9.65□□□□□ -0.86
HMGB3P12-201ENST00000438745 NLRP6P59044 892 aa9.64□□□□□ -0.87
HMGB3P12-201ENST00000438745 TMEM121BQ9BXQ6 578 aaPredicted RBP9.63□□□□□ -0.87
HMGB3P12-201ENST00000438745 NKX1-1Q15270 411 aaPredicted RBP9.6□□□□□ -0.87
HMGB3P12-201ENST00000438745 BOLA1Q9Y3E2 137 aa9.6□□□□□ -0.87
HMGB3P12-201ENST00000438745 ST18O60284 1047 aa9.58□□□□□ -0.88
HMGB3P12-201ENST00000438745 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.55□□□□□ -0.88
HMGB3P12-201ENST00000438745 DCAF8L2P0C7V8 631 aa9.54□□□□□ -0.88
HMGB3P12-201ENST00000438745 MICALL2Q8IY33 904 aa9.54□□□□□ -0.88
HMGB3P12-201ENST00000438745 PPP1R37O75864 691 aa9.52□□□□□ -0.89
HMGB3P12-201ENST00000438745 C3orf67Q6ZVT6 689 aa9.51□□□□□ -0.89
HMGB3P12-201ENST00000438745 G3V3G9 751 aa9.5□□□□□ -0.89
HMGB3P12-201ENST00000438745 GTPBP6O43824 516 aaPredicted RBP9.5□□□□□ -0.89
HMGB3P12-201ENST00000438745 RYDENQ9NUL5 291 aaKnown RBP9.49□□□□□ -0.89
HMGB3P12-201ENST00000438745 CDAN1Q8IWY9 1227 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms