RNA–Protein interactions for RNA: ENST00000428894.1

HMGB3P5-201, Transcript of high mobility group box 3 pseudogene 5, humanhuman

BASIC

Gene HMGB3P5, Length 612 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P5-201ENST00000428894 CLCN6P51797 869 aa15.4■□□□□ 0.06
HMGB3P5-201ENST00000428894 CCDC61Q9Y6R9 512 aa15.37■□□□□ 0.05
HMGB3P5-201ENST00000428894 FAM212AQ96EL1 285 aa15.35■□□□□ 0.05
HMGB3P5-201ENST00000428894 DCAF8Q5TAQ9 597 aa15.32■□□□□ 0.04
HMGB3P5-201ENST00000428894 SPOCK2Q92563 424 aa15.3■□□□□ 0.04
HMGB3P5-201ENST00000428894 GALR2O43603 387 aaPredicted RBP15.29■□□□□ 0.04
HMGB3P5-201ENST00000428894 KIF12Q96FN5 646 aa15.26■□□□□ 0.03
HMGB3P5-201ENST00000428894 MS4A3Q96HJ5 214 aa15.22■□□□□ 0.03
HMGB3P5-201ENST00000428894 GSE1Q14687 1217 aa15.21■□□□□ 0.03
HMGB3P5-201ENST00000428894 MAP3K13O43283 966 aa15.2■□□□□ 0.02
HMGB3P5-201ENST00000428894 DCBLD2Q96PD2 775 aa15.19■□□□□ 0.02
HMGB3P5-201ENST00000428894 POTEIP0CG38 1075 aa15.16■□□□□ 0.02
HMGB3P5-201ENST00000428894 CIZ1Q9ULV3 898 aaPredicted RBP15.15■□□□□ 0.02
HMGB3P5-201ENST00000428894 PYGBP11216 843 aa15.14■□□□□ 0.01
HMGB3P5-201ENST00000428894 PCDHB13Q9Y5F0 798 aa15.12■□□□□ 0.01
HMGB3P5-201ENST00000428894 SGIP1Q9BQI5 828 aa15.1■□□□□ 0.01
HMGB3P5-201ENST00000428894 TRPC6Q9Y210 931 aa15.05■□□□□ -0
HMGB3P5-201ENST00000428894 IFNL1Q8IU54 200 aa15.04■□□□□ -0
HMGB3P5-201ENST00000428894 CHRM1P11229 460 aaPredicted RBP15.02■□□□□ -0
HMGB3P5-201ENST00000428894 ATMINO43313 823 aaPredicted RBP14.99□□□□□ -0.01
HMGB3P5-201ENST00000428894 ASTLQ6HA08 431 aaPredicted RBP14.98□□□□□ -0.01
HMGB3P5-201ENST00000428894 TIE1P35590 1138 aa14.97□□□□□ -0.01
HMGB3P5-201ENST00000428894 BMP2KQ9NSY1 1161 aaPredicted RBP14.97□□□□□ -0.01
HMGB3P5-201ENST00000428894 PCDHB8Q9UN66 801 aa14.97□□□□□ -0.01
HMGB3P5-201ENST00000428894 PELP1Q8IZL8 1130 aaKnown RBP14.95□□□□□ -0.02
HMGB3P5-201ENST00000428894 ATN1P54259 1190 aaPredicted RBP14.93□□□□□ -0.02
HMGB3P5-201ENST00000428894 TRIM41Q8WV44 630 aa14.93□□□□□ -0.02
HMGB3P5-201ENST00000428894 ZNF467Q7Z7K2 595 aaPredicted RBP14.92□□□□□ -0.02
HMGB3P5-201ENST00000428894 TTLL13PA6NNM8 815 aa14.91□□□□□ -0.02
HMGB3P5-201ENST00000428894 TMEM106CQ9BVX2 250 aa14.88□□□□□ -0.03
HMGB3P5-201ENST00000428894 SLC39A7Q92504 469 aa14.84□□□□□ -0.03
HMGB3P5-201ENST00000428894 TRIM35Q9UPQ4 493 aa14.82□□□□□ -0.04
HMGB3P5-201ENST00000428894 C7P10643 843 aa14.81□□□□□ -0.04
HMGB3P5-201ENST00000428894 LHX8Q68G74 356 aa14.8□□□□□ -0.04
HMGB3P5-201ENST00000428894 METRNQ9UJH8 293 aa14.8□□□□□ -0.04
HMGB3P5-201ENST00000428894 PSEN1P49768 467 aa14.79□□□□□ -0.04
HMGB3P5-201ENST00000428894 ECM2O94769 699 aaPredicted RBP14.76□□□□□ -0.05
HMGB3P5-201ENST00000428894 PDAP1Q13442 181 aaKnown RBP14.76□□□□□ -0.05
HMGB3P5-201ENST00000428894 PKD2Q13563 968 aa14.76□□□□□ -0.05
HMGB3P5-201ENST00000428894 RIOK3O14730 519 aaKnown RBP14.72□□□□□ -0.05
HMGB3P5-201ENST00000428894 RNF25Q96BH1 459 aaPredicted RBP14.72□□□□□ -0.05
HMGB3P5-201ENST00000428894 IER5LQ5T953 404 aa14.7□□□□□ -0.06
HMGB3P5-201ENST00000428894 POTEB2H3BUK9 544 aa14.68□□□□□ -0.06
HMGB3P5-201ENST00000428894 SEC24BO95487 1268 aa14.68□□□□□ -0.06
HMGB3P5-201ENST00000428894 POTEFA5A3E0 1075 aa14.66□□□□□ -0.06
HMGB3P5-201ENST00000428894 GOLGA2Q08379 1002 aa14.65□□□□□ -0.06
HMGB3P5-201ENST00000428894 COLQQ9Y215 455 aaPredicted RBP14.65□□□□□ -0.06
HMGB3P5-201ENST00000428894 VGFO15240 615 aaPredicted RBP14.63□□□□□ -0.07
HMGB3P5-201ENST00000428894 RGL2O15211 777 aa14.61□□□□□ -0.07
HMGB3P5-201ENST00000428894 MKRN3Q13064 507 aaKnown RBP14.61□□□□□ -0.07
HMGB3P5-201ENST00000428894 CABP2Q9NPB3 220 aa14.61□□□□□ -0.07
HMGB3P5-201ENST00000428894 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.6□□□□□ -0.07
HMGB3P5-201ENST00000428894 ZFP91Q96JP5 570 aaPredicted RBP14.6□□□□□ -0.07
HMGB3P5-201ENST00000428894 PLCG2P16885 1265 aa14.59□□□□□ -0.07
HMGB3P5-201ENST00000428894 IRX5P78411 483 aaPredicted RBP14.59□□□□□ -0.07
HMGB3P5-201ENST00000428894 TAOK2Q9UL54 1235 aa14.58□□□□□ -0.08
HMGB3P5-201ENST00000428894 OCEL1Q9H607 264 aa14.56□□□□□ -0.08
HMGB3P5-201ENST00000428894 POTEJP0CG39 1038 aa14.54□□□□□ -0.08
HMGB3P5-201ENST00000428894 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.51□□□□□ -0.09
HMGB3P5-201ENST00000428894 OTUD5Q96G74 571 aa14.5□□□□□ -0.09
HMGB3P5-201ENST00000428894 EFCAB3Q8N7B9 438 aa14.49□□□□□ -0.09
HMGB3P5-201ENST00000428894 BCL11BQ9C0K0 894 aaPredicted RBP14.48□□□□□ -0.09
HMGB3P5-201ENST00000428894 MAMSTRQ6ZN01 415 aa14.47□□□□□ -0.09
HMGB3P5-201ENST00000428894 STK24Q9Y6E0 443 aa14.47□□□□□ -0.09
HMGB3P5-201ENST00000428894 STK25O00506 426 aa14.46□□□□□ -0.09
HMGB3P5-201ENST00000428894 PDCD7Q8N8D1 485 aaKnown RBP14.45□□□□□ -0.1
HMGB3P5-201ENST00000428894 SCUBE2Q9NQ36 999 aa14.44□□□□□ -0.1
HMGB3P5-201ENST00000428894 ILDR1Q86SU0 546 aaPredicted RBP14.41□□□□□ -0.1
HMGB3P5-201ENST00000428894 SOX12O15370 315 aa14.39□□□□□ -0.11
HMGB3P5-201ENST00000428894 DPY19L2Q6NUT2 758 aa14.37□□□□□ -0.11
HMGB3P5-201ENST00000428894 L3MBTL3Q96JM7 780 aaPredicted RBP14.36□□□□□ -0.11
HMGB3P5-201ENST00000428894 PHF8Q9UPP1 1060 aa14.34□□□□□ -0.11
HMGB3P5-201ENST00000428894 CHGAP10645 457 aaKnown RBP14.3□□□□□ -0.12
HMGB3P5-201ENST00000428894 AMER1Q5JTC6 1135 aaPredicted RBP14.29□□□□□ -0.12
HMGB3P5-201ENST00000428894 HS6ST3Q8IZP7 471 aa14.29□□□□□ -0.12
HMGB3P5-201ENST00000428894 NLRP6P59044 892 aa14.28□□□□□ -0.12
HMGB3P5-201ENST00000428894 G3V3G9 751 aa14.27□□□□□ -0.13
HMGB3P5-201ENST00000428894 DCAF8L2P0C7V8 631 aa14.27□□□□□ -0.13
HMGB3P5-201ENST00000428894 MS4A4AQ96JQ5 239 aa14.27□□□□□ -0.13
HMGB3P5-201ENST00000428894 MFRPQ9BY79 579 aa14.26□□□□□ -0.13
HMGB3P5-201ENST00000428894 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.26□□□□□ -0.13
HMGB3P5-201ENST00000428894 BOLA1Q9Y3E2 137 aa14.26□□□□□ -0.13
HMGB3P5-201ENST00000428894 C3orf67Q6ZVT6 689 aa14.25□□□□□ -0.13
HMGB3P5-201ENST00000428894 SLAIN1Q8ND83 568 aa14.25□□□□□ -0.13
HMGB3P5-201ENST00000428894 FBXO22Q8NEZ5 403 aa14.24□□□□□ -0.13
HMGB3P5-201ENST00000428894 RTN4Q9NQC3 1192 aaKnown RBP14.24□□□□□ -0.13
HMGB3P5-201ENST00000428894 TMEM121BQ9BXQ6 578 aaPredicted RBP14.16□□□□□ -0.14
HMGB3P5-201ENST00000428894 MICALL2Q8IY33 904 aa14.15□□□□□ -0.14
HMGB3P5-201ENST00000428894 DNAJC5Q9H3Z4 198 aa14.12□□□□□ -0.15
HMGB3P5-201ENST00000428894 NKX1-1Q15270 411 aaPredicted RBP14.09□□□□□ -0.15
HMGB3P5-201ENST00000428894 FAM163AQ96GL9 167 aaPredicted RBP14.09□□□□□ -0.15
HMGB3P5-201ENST00000428894 PPP1R37O75864 691 aa14.06□□□□□ -0.16
HMGB3P5-201ENST00000428894 SNPHO15079 494 aa14.01□□□□□ -0.17
HMGB3P5-201ENST00000428894 TMEM92Q6UXU6 159 aa14□□□□□ -0.17
HMGB3P5-201ENST00000428894 RYDENQ9NUL5 291 aaKnown RBP13.99□□□□□ -0.17
HMGB3P5-201ENST00000428894 LCE2DQ5TA82 110 aaPredicted RBP13.97□□□□□ -0.17
HMGB3P5-201ENST00000428894 GTPBP6O43824 516 aaPredicted RBP13.94□□□□□ -0.18
HMGB3P5-201ENST00000428894 ST18O60284 1047 aa13.93□□□□□ -0.18
HMGB3P5-201ENST00000428894 BBXQ8WY36 941 aaPredicted RBP13.9□□□□□ -0.18
HMGB3P5-201ENST00000428894 POTEMA6NI47 508 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms