RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TRIM44Q96DX7 344 aaPredicted RBP9□□□□□ -0.97
SCN1A-204ENST00000423058 GOLGA6L6A8MZA4 724 aa9□□□□□ -0.97
SCN1A-204ENST00000423058 HNRNPUQ00839 825 aaKnown RBP eCLIP9□□□□□ -0.97
SCN1A-204ENST00000423058 FAM9BQ8IZU0 186 aa9□□□□□ -0.97
SCN1A-204ENST00000423058 CFAP53Q96M91 514 aa8.99□□□□□ -0.97
SCN1A-204ENST00000423058 PLEKHG5O94827 1062 aa8.99□□□□□ -0.97
SCN1A-204ENST00000423058 SCRIBQ14160 1630 aa8.98□□□□□ -0.97
SCN1A-204ENST00000423058 SALL2Q9Y467 1007 aaPredicted RBP8.98□□□□□ -0.97
SCN1A-204ENST00000423058 CDCA8Q53HL2 280 aa8.98□□□□□ -0.97
SCN1A-204ENST00000423058 DDRGK1Q96HY6 314 aa8.98□□□□□ -0.97
SCN1A-204ENST00000423058 CSRNP3Q8WYN3 585 aa8.96□□□□□ -0.97
SCN1A-204ENST00000423058 CHMP4BQ9H444 224 aaKnown RBP8.96□□□□□ -0.97
SCN1A-204ENST00000423058 KDM2AQ9Y2K7 1162 aa8.96□□□□□ -0.98
SCN1A-204ENST00000423058 NRDCO43847 1150 aa8.95□□□□□ -0.98
SCN1A-204ENST00000423058 PNNQ9H307 717 aaKnown RBP8.95□□□□□ -0.98
SCN1A-204ENST00000423058 MTUS2Q5JR59 1369 aa8.94□□□□□ -0.98
SCN1A-204ENST00000423058 FKBP8Q14318 412 aa8.94□□□□□ -0.98
SCN1A-204ENST00000423058 L1TD1Q5T7N2 865 aaKnown RBP8.94□□□□□ -0.98
SCN1A-204ENST00000423058 PTMAP06454 111 aaKnown RBP8.94□□□□□ -0.98
SCN1A-204ENST00000423058 FTSJ3Q8IY81 847 aaKnown RBP8.93□□□□□ -0.98
SCN1A-204ENST00000423058 TMX4Q9H1E5 349 aaPredicted RBP8.93□□□□□ -0.98
SCN1A-204ENST00000423058 CLSTN1O94985 981 aa8.93□□□□□ -0.98
SCN1A-204ENST00000423058 FGD1P98174 961 aa8.92□□□□□ -0.98
SCN1A-204ENST00000423058 CCDC180Q9P1Z9 1646 aa8.92□□□□□ -0.98
SCN1A-204ENST00000423058 HDGFP51858 240 aaKnown RBP8.91□□□□□ -0.98
SCN1A-204ENST00000423058 DNTTIP2Q5QJE6 756 aaKnown RBP8.91□□□□□ -0.98
SCN1A-204ENST00000423058 RSF1Q96T23 1441 aaPredicted RBP8.91□□□□□ -0.98
SCN1A-204ENST00000423058 LMOD2Q6P5Q4 547 aa8.9□□□□□ -0.98
SCN1A-204ENST00000423058 NCBP3Q53F19 620 aaKnown RBP8.9□□□□□ -0.98
SCN1A-204ENST00000423058 OS9Q13438 667 aaPredicted RBP8.9□□□□□ -0.99
SCN1A-204ENST00000423058 CHIC2Q9UKJ5 165 aa8.9□□□□□ -0.99
SCN1A-204ENST00000423058 MRS2Q9HD23 443 aa8.89□□□□□ -0.99
SCN1A-204ENST00000423058 NUDCQ9Y266 331 aa8.89□□□□□ -0.99
SCN1A-204ENST00000423058 MAPK8IP3Q9UPT6 1336 aa8.89□□□□□ -0.99
SCN1A-204ENST00000423058 KNSTRNQ9Y448 316 aa8.89□□□□□ -0.99
SCN1A-204ENST00000423058 PPM1GO15355 546 aaPredicted RBP8.88□□□□□ -0.99
SCN1A-204ENST00000423058 KIAA2012Q0VF49 1180 aa8.88□□□□□ -0.99
SCN1A-204ENST00000423058 MS4A1P11836 297 aa8.88□□□□□ -0.99
SCN1A-204ENST00000423058 PLEKHD1A6NEE1 506 aa8.87□□□□□ -0.99
SCN1A-204ENST00000423058 KCNJ4P48050 445 aa8.87□□□□□ -0.99
SCN1A-204ENST00000423058 NBR1Q14596 966 aa8.87□□□□□ -0.99
SCN1A-204ENST00000423058 DDX10Q13206 875 aaKnown RBP8.87□□□□□ -0.99
SCN1A-204ENST00000423058 KCNH8Q96L42 1107 aa8.87□□□□□ -0.99
SCN1A-204ENST00000423058 POGKQ9P215 609 aa8.86□□□□□ -0.99
SCN1A-204ENST00000423058 DCAF1Q9Y4B6 1507 aa8.86□□□□□ -0.99
SCN1A-204ENST00000423058 CHAF1AQ13111 956 aaPredicted RBP8.85□□□□□ -0.99
SCN1A-204ENST00000423058 CFAP44Q96MT7 982 aa8.85□□□□□ -0.99
SCN1A-204ENST00000423058 ERCC6Q03468 1493 aa8.85□□□□□ -0.99
SCN1A-204ENST00000423058 NAP1L2Q9ULW6 460 aaPredicted RBP8.85□□□□□ -0.99
SCN1A-204ENST00000423058 ISY1Q9ULR0 285 aaKnown RBP8.84□□□□□ -0.99
SCN1A-204ENST00000423058 LAS1LQ9Y4W2 734 aaKnown RBP8.84□□□□□ -0.99
SCN1A-204ENST00000423058 PRM3Q9NNZ6 103 aa8.83□□□□□ -1
SCN1A-204ENST00000423058 KANK1Q14678 1352 aa8.83□□□□□ -1
SCN1A-204ENST00000423058 RB1CC1Q8TDY2 1594 aa8.83□□□□□ -1
SCN1A-204ENST00000423058 GOLGA6L4A6NEF3 574 aa8.82□□□□□ -1
SCN1A-204ENST00000423058 TRHP20396 242 aaPredicted RBP8.82□□□□□ -1
SCN1A-204ENST00000423058 MCCP23508 829 aa8.82□□□□□ -1
SCN1A-204ENST00000423058 SENP3Q9H4L4 574 aaPredicted RBP8.82□□□□□ -1
SCN1A-204ENST00000423058 GNL2Q13823 731 aaKnown RBP8.82□□□□□ -1
SCN1A-204ENST00000423058 TAOK2Q9UL54 1235 aa8.81□□□□□ -1
SCN1A-204ENST00000423058 KRI1Q8N9T8 703 aaKnown RBP8.8□□□□□ -1
SCN1A-204ENST00000423058 HSP90AB1P08238 724 aaKnown RBP8.79□□□□□ -1
SCN1A-204ENST00000423058 TPRNQ4KMQ1 711 aa8.79□□□□□ -1
SCN1A-204ENST00000423058 NOC3LQ8WTT2 800 aaKnown RBP8.79□□□□□ -1
SCN1A-204ENST00000423058 CHMP4AQ9BY43 222 aa8.79□□□□□ -1
SCN1A-204ENST00000423058 PLCB2Q00722 1185 aa8.77□□□□□ -1
SCN1A-204ENST00000423058 G3V3G9 751 aa8.77□□□□□ -1.01
SCN1A-204ENST00000423058 DCAF8Q5TAQ9 597 aa8.77□□□□□ -1.01
SCN1A-204ENST00000423058 RTF1Q92541 710 aaKnown RBP8.77□□□□□ -1.01
SCN1A-204ENST00000423058 RGL3Q3MIN7 710 aa8.77□□□□□ -1.01
SCN1A-204ENST00000423058 CCDC34Q96HJ3 373 aa8.76□□□□□ -1.01
SCN1A-204ENST00000423058 CFDP1Q9UEE9 299 aaPredicted RBP8.75□□□□□ -1.01
SCN1A-204ENST00000423058 ERICH6BQ5W0A0 696 aa8.75□□□□□ -1.01
SCN1A-204ENST00000423058 CLIP1P30622 1438 aa8.75□□□□□ -1.01
SCN1A-204ENST00000423058 USP35Q9P2H5 1018 aa8.75□□□□□ -1.01
SCN1A-204ENST00000423058 DRC7Q8IY82 874 aa8.74□□□□□ -1.01
SCN1A-204ENST00000423058 RRP7BPQ9NSQ0 103 aa8.74□□□□□ -1.01
SCN1A-204ENST00000423058 KIAA1211Q6ZU35 1233 aa8.74□□□□□ -1.01
SCN1A-204ENST00000423058 HTATSF1O43719 755 aaKnown RBP8.73□□□□□ -1.01
SCN1A-204ENST00000423058 CARD11Q9BXL7 1154 aa8.73□□□□□ -1.01
SCN1A-204ENST00000423058 U2SURPO15042 1029 aaKnown RBP8.72□□□□□ -1.01
SCN1A-204ENST00000423058 CALD1Q05682 793 aaKnown RBP8.72□□□□□ -1.01
SCN1A-204ENST00000423058 GPATCH3Q96I76 525 aa8.72□□□□□ -1.01
SCN1A-204ENST00000423058 HDAC5Q9UQL6 1122 aa8.72□□□□□ -1.01
SCN1A-204ENST00000423058 TPM4P67936 248 aa8.71□□□□□ -1.01
SCN1A-204ENST00000423058 HSCBQ8IWL3 235 aa8.71□□□□□ -1.01
SCN1A-204ENST00000423058 PTMSP20962 102 aa8.71□□□□□ -1.01
SCN1A-204ENST00000423058 ZCCHC6Q5VYS8 1495 aaKnown RBP8.71□□□□□ -1.02
SCN1A-204ENST00000423058 NEUROD2Q15784 382 aa8.7□□□□□ -1.02
SCN1A-204ENST00000423058 EEA1Q15075 1411 aa8.7□□□□□ -1.02
SCN1A-204ENST00000423058 CEP89Q96ST8 783 aa8.7□□□□□ -1.02
SCN1A-204ENST00000423058 SRPK2P78362 688 aaKnown RBP8.69□□□□□ -1.02
SCN1A-204ENST00000423058 FRAT1Q92837 279 aaPredicted RBP8.69□□□□□ -1.02
SCN1A-204ENST00000423058 CCDC9Q9Y3X0 531 aaKnown RBP8.69□□□□□ -1.02
SCN1A-204ENST00000423058 MSNP26038 577 aaKnown RBP8.69□□□□□ -1.02
SCN1A-204ENST00000423058 CSB-PGBD3P0DP91 1061 aa8.69□□□□□ -1.02
SCN1A-204ENST00000423058 TMF1P82094 1093 aa8.68□□□□□ -1.02
SCN1A-204ENST00000423058 TAF7LQ5H9L4 462 aa8.68□□□□□ -1.02
SCN1A-204ENST00000423058 A0A0U1RQG5 324 aaPredicted RBP8.68□□□□□ -1.02
SCN1A-204ENST00000423058 GORABQ5T7V8 394 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms