RNA–Protein interactions for RNA: ENST00000413296.1

CBX1P3-201, Transcript of chromobox 1 pseudogene 3, humanhuman

BASIC

Gene CBX1P3, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1P3-201ENST00000413296 P3H3Q8IVL6 736 aa9.46□□□□□ -0.9
CBX1P3-201ENST00000413296 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.45□□□□□ -0.9
CBX1P3-201ENST00000413296 HNRNPUL2Q1KMD3 747 aaKnown RBP9.45□□□□□ -0.9
CBX1P3-201ENST00000413296 ZNF219Q9P2Y4 722 aaPredicted RBP9.44□□□□□ -0.9
CBX1P3-201ENST00000413296 C1orf115Q9H7X2 142 aa9.42□□□□□ -0.9
CBX1P3-201ENST00000413296 HMGB1P09429 215 aaKnown RBP9.41□□□□□ -0.9
CBX1P3-201ENST00000413296 NECTIN2Q92692 538 aa9.41□□□□□ -0.9
CBX1P3-201ENST00000413296 MKRN4PQ13434 485 aaPredicted RBP9.4□□□□□ -0.9
CBX1P3-201ENST00000413296 GTPBP6O43824 516 aaPredicted RBP9.38□□□□□ -0.91
CBX1P3-201ENST00000413296 SLC24A3Q9HC58 644 aa9.38□□□□□ -0.91
CBX1P3-201ENST00000413296 IGSF3O75054 1194 aa9.36□□□□□ -0.91
CBX1P3-201ENST00000413296 ZC3H15Q8WU90 426 aaKnown RBP9.36□□□□□ -0.91
CBX1P3-201ENST00000413296 CDK11BP21127 795 aaKnown RBP9.35□□□□□ -0.91
CBX1P3-201ENST00000413296 NKX1-1Q15270 411 aaPredicted RBP9.35□□□□□ -0.91
CBX1P3-201ENST00000413296 CIZ1Q9ULV3 898 aaPredicted RBP9.35□□□□□ -0.91
CBX1P3-201ENST00000413296 CDK11AQ9UQ88 783 aaPredicted RBP9.35□□□□□ -0.91
CBX1P3-201ENST00000413296 KCTD17Q8N5Z5 321 aa9.32□□□□□ -0.92
CBX1P3-201ENST00000413296 APBB1O00213 710 aa9.31□□□□□ -0.92
CBX1P3-201ENST00000413296 ARID3CA6NKF2 412 aa9.3□□□□□ -0.92
CBX1P3-201ENST00000413296 HSP90B1P14625 803 aaKnown RBP9.3□□□□□ -0.92
CBX1P3-201ENST00000413296 TRIM41Q8WV44 630 aa9.29□□□□□ -0.92
CBX1P3-201ENST00000413296 RAD21O60216 631 aa9.28□□□□□ -0.92
CBX1P3-201ENST00000413296 PLCD3Q8N3E9 789 aa9.28□□□□□ -0.92
CBX1P3-201ENST00000413296 KCNV2Q8TDN2 545 aa9.27□□□□□ -0.93
CBX1P3-201ENST00000413296 DCAF8L1A6NGE4 600 aa9.22□□□□□ -0.93
CBX1P3-201ENST00000413296 RGS22Q8NE09 1264 aa9.22□□□□□ -0.93
CBX1P3-201ENST00000413296 STAG3Q9UJ98 1225 aa9.22□□□□□ -0.93
CBX1P3-201ENST00000413296 WDR70Q9NW82 654 aa9.21□□□□□ -0.94
CBX1P3-201ENST00000413296 PUS7Q96PZ0 661 aaKnown RBP9.2□□□□□ -0.94
CBX1P3-201ENST00000413296 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.2□□□□□ -0.94
CBX1P3-201ENST00000413296 IL27Q8NEV9 243 aa9.19□□□□□ -0.94
CBX1P3-201ENST00000413296 RNF25Q96BH1 459 aaPredicted RBP9.18□□□□□ -0.94
CBX1P3-201ENST00000413296 TRAIPQ9BWF2 469 aa9.18□□□□□ -0.94
CBX1P3-201ENST00000413296 MKRN3Q13064 507 aaKnown RBP9.17□□□□□ -0.94
CBX1P3-201ENST00000413296 MTMR7Q9Y216 660 aa9.17□□□□□ -0.94
CBX1P3-201ENST00000413296 U3KPZ7 1027 aaPredicted RBP9.17□□□□□ -0.94
CBX1P3-201ENST00000413296 ZMYND10O75800 440 aa9.16□□□□□ -0.94
CBX1P3-201ENST00000413296 CCDC82Q8N4S0 544 aa9.16□□□□□ -0.94
CBX1P3-201ENST00000413296 RYDENQ9NUL5 291 aaKnown RBP9.16□□□□□ -0.94
CBX1P3-201ENST00000413296 TMCO4Q5TGY1 634 aa9.15□□□□□ -0.94
CBX1P3-201ENST00000413296 MIER1Q8N108 512 aa9.15□□□□□ -0.94
CBX1P3-201ENST00000413296 RBM25P49756 843 aaKnown RBP9.13□□□□□ -0.95
CBX1P3-201ENST00000413296 AEBP1Q8IUX7 1158 aa9.13□□□□□ -0.95
CBX1P3-201ENST00000413296 CHMP4AQ9BY43 222 aa9.13□□□□□ -0.95
CBX1P3-201ENST00000413296 GPBP1L1Q9HC44 474 aaPredicted RBP9.13□□□□□ -0.95
CBX1P3-201ENST00000413296 STK25O00506 426 aa9.1□□□□□ -0.95
CBX1P3-201ENST00000413296 FLIIQ13045 1269 aa9.1□□□□□ -0.95
CBX1P3-201ENST00000413296 RIOK3O14730 519 aaKnown RBP9.09□□□□□ -0.95
CBX1P3-201ENST00000413296 MFAP1P55081 439 aaKnown RBP9.09□□□□□ -0.95
CBX1P3-201ENST00000413296 FOXD4L5Q5VV16 416 aaPredicted RBP9.09□□□□□ -0.95
CBX1P3-201ENST00000413296 FOXD4L4Q8WXT5 416 aaPredicted RBP9.09□□□□□ -0.95
CBX1P3-201ENST00000413296 PLEKHG5O94827 1062 aa9.08□□□□□ -0.96
CBX1P3-201ENST00000413296 BARGINQ6ZT62 677 aa9.08□□□□□ -0.96
CBX1P3-201ENST00000413296 KDM4CQ9H3R0 1056 aa9.08□□□□□ -0.96
CBX1P3-201ENST00000413296 TESPA1A2RU30 521 aaPredicted RBP9.07□□□□□ -0.96
CBX1P3-201ENST00000413296 ARHGEF1Q92888 912 aaKnown RBP9.07□□□□□ -0.96
CBX1P3-201ENST00000413296 ZNF428Q96B54 188 aa9.07□□□□□ -0.96
CBX1P3-201ENST00000413296 AK7Q96M32 723 aa9.07□□□□□ -0.96
CBX1P3-201ENST00000413296 ZBTB47Q9UFB7 747 aaPredicted RBP9.07□□□□□ -0.96
CBX1P3-201ENST00000413296 E9PSI1 815 aa9.05□□□□□ -0.96
CBX1P3-201ENST00000413296 POLA2Q14181 598 aa9.05□□□□□ -0.96
CBX1P3-201ENST00000413296 GZF1Q9H116 711 aaPredicted RBP9.04□□□□□ -0.96
CBX1P3-201ENST00000413296 SEMA3EO15041 775 aa9.03□□□□□ -0.96
CBX1P3-201ENST00000413296 TRAK2O60296 914 aa9.03□□□□□ -0.96
CBX1P3-201ENST00000413296 A6NJR5 290 aa9.02□□□□□ -0.97
CBX1P3-201ENST00000413296 CADPS2Q86UW7 1296 aa9.02□□□□□ -0.97
CBX1P3-201ENST00000413296 VGFO15240 615 aaPredicted RBP9.01□□□□□ -0.97
CBX1P3-201ENST00000413296 GSE1Q14687 1217 aa9.01□□□□□ -0.97
CBX1P3-201ENST00000413296 SMYD5Q6GMV2 418 aa8.99□□□□□ -0.97
CBX1P3-201ENST00000413296 USP35Q9P2H5 1018 aa8.97□□□□□ -0.97
CBX1P3-201ENST00000413296 STK24Q9Y6E0 443 aa8.97□□□□□ -0.97
CBX1P3-201ENST00000413296 CLUAP1Q96AJ1 413 aa8.96□□□□□ -0.98
CBX1P3-201ENST00000413296 ZNF316A6NFI3 1004 aaPredicted RBP8.95□□□□□ -0.98
CBX1P3-201ENST00000413296 KRI1Q8N9T8 703 aaKnown RBP8.95□□□□□ -0.98
CBX1P3-201ENST00000413296 BCL11BQ9C0K0 894 aaPredicted RBP8.94□□□□□ -0.98
CBX1P3-201ENST00000413296 PDE4DQ08499 809 aa8.93□□□□□ -0.98
CBX1P3-201ENST00000413296 FBXW7Q969H0 707 aa8.92□□□□□ -0.98
CBX1P3-201ENST00000413296 CCDC97Q96F63 343 aaPredicted RBP8.92□□□□□ -0.98
CBX1P3-201ENST00000413296 SGIP1Q9BQI5 828 aa8.92□□□□□ -0.98
CBX1P3-201ENST00000413296 SERPINA10Q9UK55 444 aa8.92□□□□□ -0.98
CBX1P3-201ENST00000413296 TRIM66O15016 1216 aa8.91□□□□□ -0.98
CBX1P3-201ENST00000413296 ONECUT3O60422 494 aaPredicted RBP8.91□□□□□ -0.98
CBX1P3-201ENST00000413296 E2F4Q16254 413 aa8.91□□□□□ -0.98
CBX1P3-201ENST00000413296 RSPH4AQ5TD94 716 aa8.91□□□□□ -0.98
CBX1P3-201ENST00000413296 RETREG2Q8NC44 543 aa8.9□□□□□ -0.98
CBX1P3-201ENST00000413296 FAM117AQ9C073 453 aa8.89□□□□□ -0.99
CBX1P3-201ENST00000413296 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.88□□□□□ -0.99
CBX1P3-201ENST00000413296 ZFP91Q96JP5 570 aaPredicted RBP8.88□□□□□ -0.99
CBX1P3-201ENST00000413296 ZNF777Q9ULD5 760 aaPredicted RBP8.88□□□□□ -0.99
CBX1P3-201ENST00000413296 NISCHQ9Y2I1 1504 aa8.87□□□□□ -0.99
CBX1P3-201ENST00000413296 IRF5Q13568 498 aa8.87□□□□□ -0.99
CBX1P3-201ENST00000413296 BRD2P25440 801 aaKnown RBP8.86□□□□□ -0.99
CBX1P3-201ENST00000413296 FAM177A1Q8N128 213 aaPredicted RBP8.86□□□□□ -0.99
CBX1P3-201ENST00000413296 POLR3GLQ9BT43 218 aa8.86□□□□□ -0.99
CBX1P3-201ENST00000413296 RNF39Q9H2S5 420 aa8.85□□□□□ -0.99
CBX1P3-201ENST00000413296 DDRGK1Q96HY6 314 aa8.84□□□□□ -0.99
CBX1P3-201ENST00000413296 PLEKHG3A1L390 1219 aa8.83□□□□□ -1
CBX1P3-201ENST00000413296 DCAF8Q5TAQ9 597 aa8.83□□□□□ -1
CBX1P3-201ENST00000413296 PATL2C9JE40 543 aaKnown RBP8.82□□□□□ -1
CBX1P3-201ENST00000413296 PROSER2Q86WR7 435 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms