RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 HMGB1P09429 215 aaKnown RBP5.93□□□□□ -1.46
PTPN13-202ENST00000411767 ARID4BQ4LE39 1312 aaPredicted RBP5.93□□□□□ -1.46
PTPN13-202ENST00000411767 ARXQ96QS3 562 aa5.92□□□□□ -1.46
PTPN13-202ENST00000411767 MSNP26038 577 aaKnown RBP5.92□□□□□ -1.46
PTPN13-202ENST00000411767 UBTFP17480 764 aaKnown RBP5.92□□□□□ -1.46
PTPN13-202ENST00000411767 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.91□□□□□ -1.46
PTPN13-202ENST00000411767 PHF14O94880 888 aa5.91□□□□□ -1.46
PTPN13-202ENST00000411767 HNRNPUL2Q1KMD3 747 aaKnown RBP5.91□□□□□ -1.46
PTPN13-202ENST00000411767 TPM4P67936 248 aa5.91□□□□□ -1.46
PTPN13-202ENST00000411767 BCCIPQ9P287 314 aaKnown RBP eCLIP5.91□□□□□ -1.46
PTPN13-202ENST00000411767 VGFO15240 615 aaPredicted RBP5.91□□□□□ -1.46
PTPN13-202ENST00000411767 PPM1GO15355 546 aaPredicted RBP5.91□□□□□ -1.46
PTPN13-202ENST00000411767 NOM1Q5C9Z4 860 aaKnown RBP5.9□□□□□ -1.46
PTPN13-202ENST00000411767 CCDC136Q96JN2 1154 aa5.9□□□□□ -1.47
PTPN13-202ENST00000411767 CLGNO14967 610 aa5.9□□□□□ -1.47
PTPN13-202ENST00000411767 CCDC191Q8NCU4 936 aa5.9□□□□□ -1.47
PTPN13-202ENST00000411767 GPS2Q13227 327 aa5.89□□□□□ -1.47
PTPN13-202ENST00000411767 GOLGA6L3A6NEY3 463 aa5.89□□□□□ -1.47
PTPN13-202ENST00000411767 CDR1P51861 262 aa5.88□□□□□ -1.47
PTPN13-202ENST00000411767 ZRSR2Q15696 482 aaKnown RBP5.88□□□□□ -1.47
PTPN13-202ENST00000411767 TEX35Q5T0J7 233 aa5.88□□□□□ -1.47
PTPN13-202ENST00000411767 PPP4R2Q9NY27 417 aa5.87□□□□□ -1.47
PTPN13-202ENST00000411767 GOLGA2Q08379 1002 aa5.87□□□□□ -1.47
PTPN13-202ENST00000411767 CCDC70Q6NSX1 233 aa5.87□□□□□ -1.47
PTPN13-202ENST00000411767 BCANQ96GW7 911 aa5.87□□□□□ -1.47
PTPN13-202ENST00000411767 CCDC34Q96HJ3 373 aa5.87□□□□□ -1.47
PTPN13-202ENST00000411767 HMGB3O15347 200 aaKnown RBP5.86□□□□□ -1.47
PTPN13-202ENST00000411767 TAF7LQ5H9L4 462 aa5.86□□□□□ -1.47
PTPN13-202ENST00000411767 DRC7Q8IY82 874 aa5.86□□□□□ -1.47
PTPN13-202ENST00000411767 CCDC175P0C221 793 aa5.86□□□□□ -1.47
PTPN13-202ENST00000411767 NBR1Q14596 966 aa5.85□□□□□ -1.47
PTPN13-202ENST00000411767 TSPYL1Q9H0U9 437 aa5.85□□□□□ -1.47
PTPN13-202ENST00000411767 DCTN1Q14203 1278 aa5.85□□□□□ -1.47
PTPN13-202ENST00000411767 MNS1Q8NEH6 495 aa5.85□□□□□ -1.47
PTPN13-202ENST00000411767 INCENPQ9NQS7 918 aa5.84□□□□□ -1.47
PTPN13-202ENST00000411767 PATL2C9JE40 543 aaKnown RBP5.84□□□□□ -1.47
PTPN13-202ENST00000411767 ARGLU1Q9NWB6 273 aaPredicted RBP5.84□□□□□ -1.47
PTPN13-202ENST00000411767 ACIN1Q9UKV3 1341 aaKnown RBP5.84□□□□□ -1.47
PTPN13-202ENST00000411767 PLCB2Q00722 1185 aa5.83□□□□□ -1.48
PTPN13-202ENST00000411767 DYDC1Q8WWB3 177 aa5.83□□□□□ -1.48
PTPN13-202ENST00000411767 TPM3P06753 285 aa5.83□□□□□ -1.48
PTPN13-202ENST00000411767 MAP7D2Q96T17 732 aa5.83□□□□□ -1.48
PTPN13-202ENST00000411767 RDXP35241 583 aaKnown RBP5.83□□□□□ -1.48
PTPN13-202ENST00000411767 CHMP4BQ9H444 224 aaKnown RBP5.83□□□□□ -1.48
PTPN13-202ENST00000411767 CAGE1Q8TC20 777 aa5.82□□□□□ -1.48
PTPN13-202ENST00000411767 CHMP3Q9Y3E7 222 aa5.82□□□□□ -1.48
PTPN13-202ENST00000411767 HRCP23327 699 aa5.82□□□□□ -1.48
PTPN13-202ENST00000411767 CALD1Q05682 793 aaKnown RBP5.81□□□□□ -1.48
PTPN13-202ENST00000411767 CFAP44Q96MT7 982 aa5.81□□□□□ -1.48
PTPN13-202ENST00000411767 HMGB1P1B2RPK0 211 aaPredicted RBP5.8□□□□□ -1.48
PTPN13-202ENST00000411767 FYB1O15117 783 aa5.8□□□□□ -1.48
PTPN13-202ENST00000411767 CFAP57Q96MR6 1250 aa5.8□□□□□ -1.48
PTPN13-202ENST00000411767 KIF20AO95235 890 aa5.8□□□□□ -1.48
PTPN13-202ENST00000411767 EIF4G2P78344 907 aaKnown RBP eCLIP5.79□□□□□ -1.48
PTPN13-202ENST00000411767 FGD1P98174 961 aa5.79□□□□□ -1.48
PTPN13-202ENST00000411767 CREBRFQ8IUR6 639 aa5.79□□□□□ -1.48
PTPN13-202ENST00000411767 FBXO3Q9UK99 471 aa5.79□□□□□ -1.48
PTPN13-202ENST00000411767 SPATA24Q86W54 205 aa5.79□□□□□ -1.48
PTPN13-202ENST00000411767 CNKSR2Q8WXI2 1034 aa5.78□□□□□ -1.48
PTPN13-202ENST00000411767 FEZ1Q99689 392 aa5.78□□□□□ -1.48
PTPN13-202ENST00000411767 AK7Q96M32 723 aa5.78□□□□□ -1.48
PTPN13-202ENST00000411767 TRIM41Q8WV44 630 aa5.78□□□□□ -1.48
PTPN13-202ENST00000411767 SEPT10Q9P0V9 454 aa5.78□□□□□ -1.48
PTPN13-202ENST00000411767 GNL2Q13823 731 aaKnown RBP5.78□□□□□ -1.48
PTPN13-202ENST00000411767 IPO9Q96P70 1041 aaKnown RBP5.78□□□□□ -1.48
PTPN13-202ENST00000411767 USP8P40818 1118 aa5.77□□□□□ -1.48
PTPN13-202ENST00000411767 ACBD3Q9H3P7 528 aa5.77□□□□□ -1.48
PTPN13-202ENST00000411767 DIAPH3Q9NSV4 1193 aa5.77□□□□□ -1.48
PTPN13-202ENST00000411767 CWC15Q9P013 229 aaKnown RBP5.77□□□□□ -1.48
PTPN13-202ENST00000411767 GBP4Q96PP9 640 aa5.77□□□□□ -1.49
PTPN13-202ENST00000411767 CCDC112Q8NEF3 446 aa5.77□□□□□ -1.49
PTPN13-202ENST00000411767 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.77□□□□□ -1.49
PTPN13-202ENST00000411767 ITGAEP38570 1179 aa5.77□□□□□ -1.49
PTPN13-202ENST00000411767 SYAP1Q96A49 352 aaPredicted RBP5.77□□□□□ -1.49
PTPN13-202ENST00000411767 ANKRD18AQ8IVF6 992 aa5.76□□□□□ -1.49
PTPN13-202ENST00000411767 GOLGA6L7A0A1B0GV03 622 aa5.76□□□□□ -1.49
PTPN13-202ENST00000411767 ESF1Q9H501 851 aaKnown RBP5.76□□□□□ -1.49
PTPN13-202ENST00000411767 GTF3C3Q9Y5Q9 886 aa5.76□□□□□ -1.49
PTPN13-202ENST00000411767 TPM2P07951 284 aa5.76□□□□□ -1.49
PTPN13-202ENST00000411767 TSR1Q2NL82 804 aaKnown RBP5.76□□□□□ -1.49
PTPN13-202ENST00000411767 AXDND1Q5T1B0 1012 aaPredicted RBP5.76□□□□□ -1.49
PTPN13-202ENST00000411767 NPHP1O15259 732 aa5.75□□□□□ -1.49
PTPN13-202ENST00000411767 MYO6Q9UM54 1294 aa5.75□□□□□ -1.49
PTPN13-202ENST00000411767 TRIM52Q96A61 297 aa5.75□□□□□ -1.49
PTPN13-202ENST00000411767 ISY1Q9ULR0 285 aaKnown RBP5.75□□□□□ -1.49
PTPN13-202ENST00000411767 MCCP23508 829 aa5.74□□□□□ -1.49
PTPN13-202ENST00000411767 FAM193AP78312 1265 aa5.74□□□□□ -1.49
PTPN13-202ENST00000411767 PPM1EQ8WY54 764 aa5.74□□□□□ -1.49
PTPN13-202ENST00000411767 CCDC173Q0VFZ6 552 aa5.74□□□□□ -1.49
PTPN13-202ENST00000411767 NF2P35240 595 aa5.74□□□□□ -1.49
PTPN13-202ENST00000411767 ZNF771Q7L3S4 317 aaPredicted RBP5.74□□□□□ -1.49
PTPN13-202ENST00000411767 RUFY1Q96T51 708 aa5.74□□□□□ -1.49
PTPN13-202ENST00000411767 PDE4CQ08493 712 aa5.73□□□□□ -1.49
PTPN13-202ENST00000411767 ANO8Q9HCE9 1232 aaPredicted RBP5.73□□□□□ -1.49
PTPN13-202ENST00000411767 EZRP15311 586 aaKnown RBP5.73□□□□□ -1.49
PTPN13-202ENST00000411767 CSPP1Q1MSJ5 1256 aa5.73□□□□□ -1.49
PTPN13-202ENST00000411767 HAP1P54257 671 aaPredicted RBP5.73□□□□□ -1.49
PTPN13-202ENST00000411767 TPM1P09493 284 aa5.73□□□□□ -1.49
PTPN13-202ENST00000411767 FAM50AQ14320 339 aaKnown RBP5.73□□□□□ -1.49
PTPN13-202ENST00000411767 PES1O00541 588 aaKnown RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms