RNA–Protein interactions for RNA: ENST00000400000.6

VAPA-202, Transcript of VAMP associated protein A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPA, Length 6,815 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-202ENST00000400000 PPM1GO15355 546 aaPredicted RBP18.45■□□□□ 0.54
VAPA-202ENST00000400000 LMOD2Q6P5Q4 547 aa18.45■□□□□ 0.54
VAPA-202ENST00000400000 SCRIBQ14160 1630 aa18.45■□□□□ 0.54
VAPA-202ENST00000400000 CHMP7Q8WUX9 453 aaPredicted RBP18.43■□□□□ 0.54
VAPA-202ENST00000400000 RGL3Q3MIN7 710 aa18.4■□□□□ 0.54
VAPA-202ENST00000400000 CDK11BP21127 795 aaKnown RBP18.4■□□□□ 0.54
VAPA-202ENST00000400000 MRS2Q9HD23 443 aa18.38■□□□□ 0.53
VAPA-202ENST00000400000 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.37■□□□□ 0.53
VAPA-202ENST00000400000 NCBP3Q53F19 620 aaKnown RBP18.37■□□□□ 0.53
VAPA-202ENST00000400000 RRP7BPQ9NSQ0 103 aa18.37■□□□□ 0.53
VAPA-202ENST00000400000 LAS1LQ9Y4W2 734 aaKnown RBP18.35■□□□□ 0.53
VAPA-202ENST00000400000 MYH16Q9H6N6 1097 aa18.33■□□□□ 0.52
VAPA-202ENST00000400000 NPHP1O15259 732 aa18.32■□□□□ 0.52
VAPA-202ENST00000400000 TSPY4P0CV99 314 aa18.31■□□□□ 0.52
VAPA-202ENST00000400000 TSPY10P0CW01 314 aa18.31■□□□□ 0.52
VAPA-202ENST00000400000 TRHP20396 242 aaPredicted RBP18.31■□□□□ 0.52
VAPA-202ENST00000400000 NCLP19338 710 aaKnown RBP18.3■□□□□ 0.52
VAPA-202ENST00000400000 NEUROD2Q15784 382 aa18.3■□□□□ 0.52
VAPA-202ENST00000400000 TNNT2P45379 298 aaPredicted RBP18.28■□□□□ 0.52
VAPA-202ENST00000400000 SOX12O15370 315 aa18.25■□□□□ 0.51
VAPA-202ENST00000400000 MLECQ14165 292 aa18.23■□□□□ 0.51
VAPA-202ENST00000400000 AMER1Q5JTC6 1135 aaPredicted RBP18.2■□□□□ 0.5
VAPA-202ENST00000400000 MTUS2Q5JR59 1369 aa18.19■□□□□ 0.5
VAPA-202ENST00000400000 MIER1Q8N108 512 aa18.18■□□□□ 0.5
VAPA-202ENST00000400000 NAP1L2Q9ULW6 460 aaPredicted RBP18.14■□□□□ 0.49
VAPA-202ENST00000400000 PLCB2Q00722 1185 aa18.11■□□□□ 0.49
VAPA-202ENST00000400000 RTN4Q9NQC3 1192 aaKnown RBP18.08■□□□□ 0.48
VAPA-202ENST00000400000 SAFB2Q14151 953 aaKnown RBP eCLIP18.07■□□□□ 0.48
VAPA-202ENST00000400000 FTSJ3Q8IY81 847 aaKnown RBP18.07■□□□□ 0.48
VAPA-202ENST00000400000 FRAT1Q92837 279 aaPredicted RBP18.07■□□□□ 0.48
VAPA-202ENST00000400000 CC2D1BQ5T0F9 858 aaKnown RBP18.06■□□□□ 0.48
VAPA-202ENST00000400000 PTMAP06454 111 aaKnown RBP18.06■□□□□ 0.48
VAPA-202ENST00000400000 CLSTN1O94985 981 aa18.06■□□□□ 0.48
VAPA-202ENST00000400000 TRIM44Q96DX7 344 aaPredicted RBP18.04■□□□□ 0.48
VAPA-202ENST00000400000 POGKQ9P215 609 aa18.04■□□□□ 0.48
VAPA-202ENST00000400000 ZRSR1Q15695 479 aaKnown RBP18.03■□□□□ 0.48
VAPA-202ENST00000400000 EIF4G2P78344 907 aaKnown RBP eCLIP18.03■□□□□ 0.48
VAPA-202ENST00000400000 DNTTIP2Q5QJE6 756 aaKnown RBP18.03■□□□□ 0.48
VAPA-202ENST00000400000 RGS3P49796 1198 aa18.03■□□□□ 0.48
VAPA-202ENST00000400000 OS9Q13438 667 aaPredicted RBP18.02■□□□□ 0.48
VAPA-202ENST00000400000 ISY1Q9ULR0 285 aaKnown RBP18.02■□□□□ 0.47
VAPA-202ENST00000400000 PLEKHD1A6NEE1 506 aa18.01■□□□□ 0.47
VAPA-202ENST00000400000 U2SURPO15042 1029 aaKnown RBP18.01■□□□□ 0.47
VAPA-202ENST00000400000 GLIPR1L2Q4G1C9 344 aa18.01■□□□□ 0.47
VAPA-202ENST00000400000 SPRYD3Q8NCJ5 442 aa18■□□□□ 0.47
VAPA-202ENST00000400000 SUPT16HQ9Y5B9 1047 aaKnown RBP17.99■□□□□ 0.47
VAPA-202ENST00000400000 KNSTRNQ9Y448 316 aa17.98■□□□□ 0.47
VAPA-202ENST00000400000 BECN1Q14457 450 aa17.97■□□□□ 0.47
VAPA-202ENST00000400000 GOLGA2Q08379 1002 aa17.95■□□□□ 0.46
VAPA-202ENST00000400000 CFAP53Q96M91 514 aa17.95■□□□□ 0.46
VAPA-202ENST00000400000 FGD1P98174 961 aa17.95■□□□□ 0.46
VAPA-202ENST00000400000 CARD11Q9BXL7 1154 aa17.95■□□□□ 0.46
VAPA-202ENST00000400000 ZNF330Q9Y3S2 320 aaPredicted RBP17.95■□□□□ 0.46
VAPA-202ENST00000400000 CASC1Q6TDU7 716 aa17.94■□□□□ 0.46
VAPA-202ENST00000400000 MAPK8IP3Q9UPT6 1336 aa17.93■□□□□ 0.46
VAPA-202ENST00000400000 APBB1O00213 710 aa17.91■□□□□ 0.46
VAPA-202ENST00000400000 CFDP1Q9UEE9 299 aaPredicted RBP17.91■□□□□ 0.46
VAPA-202ENST00000400000 KCNJ4P48050 445 aa17.91■□□□□ 0.46
VAPA-202ENST00000400000 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.91■□□□□ 0.46
VAPA-202ENST00000400000 GOLGA6L22H0YM25 854 aa17.91■□□□□ 0.46
VAPA-202ENST00000400000 ERCC6Q03468 1493 aa17.91■□□□□ 0.46
VAPA-202ENST00000400000 STK26Q9P289 416 aa17.9■□□□□ 0.46
VAPA-202ENST00000400000 ZCCHC6Q5VYS8 1495 aaKnown RBP17.89■□□□□ 0.45
VAPA-202ENST00000400000 SIN3AQ96ST3 1273 aa17.88■□□□□ 0.45
VAPA-202ENST00000400000 PAK3O75914 559 aaPredicted RBP17.88■□□□□ 0.45
VAPA-202ENST00000400000 ANO8Q9HCE9 1232 aaPredicted RBP17.87■□□□□ 0.45
VAPA-202ENST00000400000 CCDC9Q9Y3X0 531 aaKnown RBP17.86■□□□□ 0.45
VAPA-202ENST00000400000 DDRGK1Q96HY6 314 aa17.86■□□□□ 0.45
VAPA-202ENST00000400000 HSP90AB1P08238 724 aaKnown RBP17.84■□□□□ 0.45
VAPA-202ENST00000400000 NAP1L5Q96NT1 182 aaPredicted RBP17.83■□□□□ 0.45
VAPA-202ENST00000400000 ERICH6BQ5W0A0 696 aa17.82■□□□□ 0.44
VAPA-202ENST00000400000 SRPK2P78362 688 aaKnown RBP17.82■□□□□ 0.44
VAPA-202ENST00000400000 PDE4CQ08493 712 aa17.8■□□□□ 0.44
VAPA-202ENST00000400000 CLIP1P30622 1438 aa17.79■□□□□ 0.44
VAPA-202ENST00000400000 B4GALNT3Q6L9W6 998 aa17.79■□□□□ 0.44
VAPA-202ENST00000400000 GGT6Q6P531 493 aa17.78■□□□□ 0.44
VAPA-202ENST00000400000 EIF4G1Q04637 1599 aaKnown RBP17.77■□□□□ 0.44
VAPA-202ENST00000400000 NUTM2DQ5VT03 806 aaPredicted RBP17.77■□□□□ 0.43
VAPA-202ENST00000400000 ARID3AQ99856 593 aa17.76■□□□□ 0.43
VAPA-202ENST00000400000 NUDCQ9Y266 331 aa17.76■□□□□ 0.43
VAPA-202ENST00000400000 CSB-PGBD3P0DP91 1061 aa17.74■□□□□ 0.43
VAPA-202ENST00000400000 DCAF11Q8TEB1 546 aa17.74■□□□□ 0.43
VAPA-202ENST00000400000 FOXD1Q16676 465 aa17.72■□□□□ 0.43
VAPA-202ENST00000400000 NUTM2FA1L443 756 aa17.7■□□□□ 0.42
VAPA-202ENST00000400000 DRC7Q8IY82 874 aa17.69■□□□□ 0.42
VAPA-202ENST00000400000 CDCA8Q53HL2 280 aa17.68■□□□□ 0.42
VAPA-202ENST00000400000 GOLGA6L4A6NEF3 574 aa17.67■□□□□ 0.42
VAPA-202ENST00000400000 PRM3Q9NNZ6 103 aa17.66■□□□□ 0.42
VAPA-202ENST00000400000 CHMP3Q9Y3E7 222 aa17.66■□□□□ 0.42
VAPA-202ENST00000400000 GNL2Q13823 731 aaKnown RBP17.66■□□□□ 0.42
VAPA-202ENST00000400000 RSF1Q96T23 1441 aaPredicted RBP17.65■□□□□ 0.42
VAPA-202ENST00000400000 RTF1Q92541 710 aaKnown RBP17.63■□□□□ 0.41
VAPA-202ENST00000400000 MORC1Q86VD1 984 aa17.63■□□□□ 0.41
VAPA-202ENST00000400000 GOLGA6L6A8MZA4 724 aa17.59■□□□□ 0.41
VAPA-202ENST00000400000 LTV1Q96GA3 475 aaPredicted RBP17.59■□□□□ 0.41
VAPA-202ENST00000400000 GZF1Q9H116 711 aaPredicted RBP17.59■□□□□ 0.41
VAPA-202ENST00000400000 NOL8Q76FK4 1167 aaKnown RBP17.59■□□□□ 0.41
VAPA-202ENST00000400000 HSCBQ8IWL3 235 aa17.57■□□□□ 0.4
VAPA-202ENST00000400000 CREBRFQ8IUR6 639 aa17.57■□□□□ 0.4
VAPA-202ENST00000400000 DCAF1Q9Y4B6 1507 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms