RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 CCER2I3L3R5 266 aa14.81□□□□□ -0.04
HPS4-202ENST00000398145 TIMELESSQ9UNS1 1208 aa14.81□□□□□ -0.04
HPS4-202ENST00000398145 BAZ1AQ9NRL2 1556 aaPredicted RBP14.81□□□□□ -0.04
HPS4-202ENST00000398145 NACADO15069 1562 aa14.79□□□□□ -0.04
HPS4-202ENST00000398145 UPF2Q9HAU5 1272 aaKnown RBP14.78□□□□□ -0.04
HPS4-202ENST00000398145 RRP7BPQ9NSQ0 103 aa14.78□□□□□ -0.04
HPS4-202ENST00000398145 CCDC88BA6NC98 1476 aa14.76□□□□□ -0.05
HPS4-202ENST00000398145 FBLN2P98095 1184 aa14.76□□□□□ -0.05
HPS4-202ENST00000398145 KIF27Q86VH2 1401 aa14.76□□□□□ -0.05
HPS4-202ENST00000398145 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.76□□□□□ -0.05
HPS4-202ENST00000398145 NOP58Q9Y2X3 529 aaKnown RBP14.75□□□□□ -0.05
HPS4-202ENST00000398145 MROH2BQ7Z745 1585 aa14.75□□□□□ -0.05
HPS4-202ENST00000398145 B4GALNT3Q6L9W6 998 aa14.73□□□□□ -0.05
HPS4-202ENST00000398145 DDRGK1Q96HY6 314 aa14.72□□□□□ -0.05
HPS4-202ENST00000398145 ABCC8Q09428 1581 aa14.71□□□□□ -0.05
HPS4-202ENST00000398145 GLIPR1L2Q4G1C9 344 aa14.7□□□□□ -0.06
HPS4-202ENST00000398145 KANK4Q5T7N3 995 aaPredicted RBP14.7□□□□□ -0.06
HPS4-202ENST00000398145 KDM2AQ9Y2K7 1162 aa14.69□□□□□ -0.06
HPS4-202ENST00000398145 PPM1GO15355 546 aaPredicted RBP14.69□□□□□ -0.06
HPS4-202ENST00000398145 ANP32BQ92688 251 aaKnown RBP14.68□□□□□ -0.06
HPS4-202ENST00000398145 WDR43Q15061 677 aaKnown RBP eCLIP14.68□□□□□ -0.06
HPS4-202ENST00000398145 ERICH6BQ5W0A0 696 aa14.68□□□□□ -0.06
HPS4-202ENST00000398145 DEKP35659 375 aaKnown RBP14.67□□□□□ -0.06
HPS4-202ENST00000398145 SETD5Q9C0A6 1442 aa14.67□□□□□ -0.06
HPS4-202ENST00000398145 HSP90AA1P07900 732 aaKnown RBP14.66□□□□□ -0.06
HPS4-202ENST00000398145 NEFMP07197 916 aa14.66□□□□□ -0.06
HPS4-202ENST00000398145 SENP3-EIF4A1A0A087X0R7 540 aa14.65□□□□□ -0.06
HPS4-202ENST00000398145 BAZ1BQ9UIG0 1483 aaKnown RBP14.65□□□□□ -0.06
HPS4-202ENST00000398145 TSPY4P0CV99 314 aa14.63□□□□□ -0.07
HPS4-202ENST00000398145 TSPY10P0CW01 314 aa14.63□□□□□ -0.07
HPS4-202ENST00000398145 RAB3GAP2Q9H2M9 1393 aa14.63□□□□□ -0.07
HPS4-202ENST00000398145 ARXQ96QS3 562 aa14.61□□□□□ -0.07
HPS4-202ENST00000398145 LAS1LQ9Y4W2 734 aaKnown RBP14.61□□□□□ -0.07
HPS4-202ENST00000398145 FHAD1B1AJZ9 1412 aa14.61□□□□□ -0.07
HPS4-202ENST00000398145 DHX57Q6P158 1386 aaKnown RBP14.6□□□□□ -0.07
HPS4-202ENST00000398145 PPP1R15AO75807 674 aaPredicted RBP14.59□□□□□ -0.07
HPS4-202ENST00000398145 KCNH8Q96L42 1107 aa14.58□□□□□ -0.08
HPS4-202ENST00000398145 BECN1Q14457 450 aa14.58□□□□□ -0.08
HPS4-202ENST00000398145 RTN4Q9NQC3 1192 aaKnown RBP14.58□□□□□ -0.08
HPS4-202ENST00000398145 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.56□□□□□ -0.086e-6■□□□□ 8.2
HPS4-202ENST00000398145 HSPA5P11021 654 aaKnown RBP14.55□□□□□ -0.08
HPS4-202ENST00000398145 CARD11Q9BXL7 1154 aa14.55□□□□□ -0.08
HPS4-202ENST00000398145 WIZO95785 1651 aa14.53□□□□□ -0.08
HPS4-202ENST00000398145 CARMIL1Q5VZK9 1371 aa14.51□□□□□ -0.09
HPS4-202ENST00000398145 TOP2AP11388 1531 aaKnown RBP14.48□□□□□ -0.09
HPS4-202ENST00000398145 RUSC2Q8N2Y8 1516 aa14.48□□□□□ -0.09
HPS4-202ENST00000398145 ARHGAP35Q9NRY4 1499 aa14.47□□□□□ -0.09
HPS4-202ENST00000398145 RGL3Q3MIN7 710 aa14.47□□□□□ -0.09
HPS4-202ENST00000398145 CFDP1Q9UEE9 299 aaPredicted RBP14.47□□□□□ -0.09
HPS4-202ENST00000398145 RAPGEF2Q9Y4G8 1499 aa14.46□□□□□ -0.09
HPS4-202ENST00000398145 CHGAP10645 457 aaKnown RBP14.46□□□□□ -0.09
HPS4-202ENST00000398145 RGS3P49796 1198 aa14.46□□□□□ -0.1
HPS4-202ENST00000398145 CUX2O14529 1486 aa14.45□□□□□ -0.1
HPS4-202ENST00000398145 TRIM44Q96DX7 344 aaPredicted RBP14.44□□□□□ -0.1
HPS4-202ENST00000398145 KNSTRNQ9Y448 316 aa14.44□□□□□ -0.1
HPS4-202ENST00000398145 IPO9Q96P70 1041 aaKnown RBP14.44□□□□□ -0.1
HPS4-202ENST00000398145 FANCIQ9NVI1 1328 aa14.43□□□□□ -0.1
HPS4-202ENST00000398145 TCERG1O14776 1098 aaKnown RBP14.41□□□□□ -0.1
HPS4-202ENST00000398145 CDCA8Q53HL2 280 aa14.41□□□□□ -0.1
HPS4-202ENST00000398145 PLEKHD1A6NEE1 506 aa14.4□□□□□ -0.1
HPS4-202ENST00000398145 NUDCQ9Y266 331 aa14.4□□□□□ -0.1
HPS4-202ENST00000398145 SLC24A1O60721 1099 aa14.39□□□□□ -0.11
HPS4-202ENST00000398145 RCAN3Q9UKA8 241 aa14.38□□□□□ -0.11
HPS4-202ENST00000398145 CC2D1BQ5T0F9 858 aaKnown RBP14.37□□□□□ -0.11
HPS4-202ENST00000398145 MPHOSPH9Q99550 1183 aa14.37□□□□□ -0.11
HPS4-202ENST00000398145 GOLGA6L22H0YM25 854 aa14.36□□□□□ -0.11
HPS4-202ENST00000398145 FOXD1Q16676 465 aa14.36□□□□□ -0.11
HPS4-202ENST00000398145 CHMP7Q8WUX9 453 aaPredicted RBP14.35□□□□□ -0.11
HPS4-202ENST00000398145 FMN1Q68DA7 1419 aa14.35□□□□□ -0.11
HPS4-202ENST00000398145 L3MBTL2Q969R5 705 aa14.35□□□□□ -0.11
HPS4-202ENST00000398145 DCAF11Q8TEB1 546 aa14.34□□□□□ -0.11
HPS4-202ENST00000398145 NAP1L5Q96NT1 182 aaPredicted RBP14.33□□□□□ -0.11
HPS4-202ENST00000398145 MYH16Q9H6N6 1097 aa14.33□□□□□ -0.12
HPS4-202ENST00000398145 PRKRIP1Q9H875 184 aaPredicted RBP14.31□□□□□ -0.12
HPS4-202ENST00000398145 FRAT1Q92837 279 aaPredicted RBP14.31□□□□□ -0.12
HPS4-202ENST00000398145 ZBED9Q6R2W3 1325 aa14.3□□□□□ -0.12
HPS4-202ENST00000398145 RALBP1Q15311 655 aa14.3□□□□□ -0.12
HPS4-202ENST00000398145 NEUROD2Q15784 382 aa14.3□□□□□ -0.12
HPS4-202ENST00000398145 FTSJ3Q8IY81 847 aaKnown RBP14.3□□□□□ -0.12
HPS4-202ENST00000398145 CFAP53Q96M91 514 aa14.3□□□□□ -0.12
HPS4-202ENST00000398145 USP35Q9P2H5 1018 aa14.29□□□□□ -0.12
HPS4-202ENST00000398145 TMF1P82094 1093 aa14.29□□□□□ -0.12
HPS4-202ENST00000398145 L1TD1Q5T7N2 865 aaKnown RBP14.29□□□□□ -0.12
HPS4-202ENST00000398145 PKD2Q13563 968 aa14.28□□□□□ -0.12
HPS4-202ENST00000398145 KTN1Q86UP2 1357 aaKnown RBP14.28□□□□□ -0.12
HPS4-202ENST00000398145 SMARCA2P51531 1590 aa14.26□□□□□ -0.13
HPS4-202ENST00000398145 PDE3BQ13370 1112 aa14.26□□□□□ -0.13
HPS4-202ENST00000398145 NCLP19338 710 aaKnown RBP14.25□□□□□ -0.13
HPS4-202ENST00000398145 NLRP13Q86W25 1043 aa14.23□□□□□ -0.13
HPS4-202ENST00000398145 STAG3Q9UJ98 1225 aa14.23□□□□□ -0.13
HPS4-202ENST00000398145 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.23□□□□□ -0.13
HPS4-202ENST00000398145 FHOD3Q2V2M9 1422 aa14.22□□□□□ -0.13
HPS4-202ENST00000398145 SMARCA4P51532 1647 aa14.22□□□□□ -0.13
HPS4-202ENST00000398145 MS4A1P11836 297 aa14.21□□□□□ -0.13
HPS4-202ENST00000398145 PDE4AP27815 886 aa14.21□□□□□ -0.13
HPS4-202ENST00000398145 KIF21BO75037 1637 aa14.21□□□□□ -0.14
HPS4-202ENST00000398145 ROCK2O75116 1388 aaKnown RBP14.21□□□□□ -0.14
HPS4-202ENST00000398145 HSP90AB1P08238 724 aaKnown RBP14.19□□□□□ -0.14
HPS4-202ENST00000398145 HSCBQ8IWL3 235 aa14.18□□□□□ -0.14
HPS4-202ENST00000398145 SLKQ9H2G2 1235 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms