RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 HMGXB3Q12766 1538 aa13.54□□□□□ -0.24
UBR4-201ENST00000375218 CCDC136Q96JN2 1154 aa13.53□□□□□ -0.24
UBR4-201ENST00000375218 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
UBR4-201ENST00000375218 PRDM2Q13029 1718 aa13.51□□□□□ -0.25
UBR4-201ENST00000375218 RUSC2Q8N2Y8 1516 aa13.48□□□□□ -0.25
UBR4-201ENST00000375218 IRX6P78412 446 aaPredicted RBP13.46□□□□□ -0.25
UBR4-201ENST00000375218 A0A0U1RQG5 324 aaPredicted RBP13.44□□□□□ -0.26
UBR4-201ENST00000375218 HSP90B1P14625 803 aaKnown RBP13.41□□□□□ -0.26
UBR4-201ENST00000375218 BAZ1BQ9UIG0 1483 aaKnown RBP13.4□□□□□ -0.27
UBR4-201ENST00000375218 BIVM-ERCC5R4GMW8 1640 aa13.37□□□□□ -0.27
UBR4-201ENST00000375218 NBR1Q14596 966 aa13.37□□□□□ -0.27
UBR4-201ENST00000375218 CCDC9Q9Y3X0 531 aaKnown RBP13.37□□□□□ -0.27
UBR4-201ENST00000375218 ANO8Q9HCE9 1232 aaPredicted RBP13.36□□□□□ -0.27
UBR4-201ENST00000375218 CUX1P39880 1505 aa13.33□□□□□ -0.28
UBR4-201ENST00000375218 ZEB1P37275 1124 aaPredicted RBP13.32□□□□□ -0.28
UBR4-201ENST00000375218 NESP48681 1621 aa13.32□□□□□ -0.28
UBR4-201ENST00000375218 CENPBP07199 599 aaPredicted RBP13.31□□□□□ -0.28
UBR4-201ENST00000375218 FGD1P98174 961 aa13.31□□□□□ -0.28
UBR4-201ENST00000375218 SOGA1O94964 1423 aa13.31□□□□□ -0.28
UBR4-201ENST00000375218 CFTRP13569 1480 aa13.3□□□□□ -0.28
UBR4-201ENST00000375218 NPM3O75607 178 aaKnown RBP13.3□□□□□ -0.28
UBR4-201ENST00000375218 PAXIP1Q6ZW49 1069 aaPredicted RBP13.29□□□□□ -0.28
UBR4-201ENST00000375218 TOP2BQ02880 1626 aa13.29□□□□□ -0.28
UBR4-201ENST00000375218 HMGB1P09429 215 aaKnown RBP13.29□□□□□ -0.28
UBR4-201ENST00000375218 KIF21AQ7Z4S6 1674 aa13.26□□□□□ -0.29
UBR4-201ENST00000375218 WDR97A6NE52 1622 aa13.23□□□□□ -0.29
UBR4-201ENST00000375218 TRHP20396 242 aaPredicted RBP13.23□□□□□ -0.29
UBR4-201ENST00000375218 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.2□□□□□ -0.3
UBR4-201ENST00000375218 TSHZ2Q9NRE2 1034 aa13.18□□□□□ -0.3
UBR4-201ENST00000375218 ZNF428Q96B54 188 aa13.17□□□□□ -0.3
UBR4-201ENST00000375218 ZBTB7CA1YPR0 619 aa13.16□□□□□ -0.3
UBR4-201ENST00000375218 NECTIN2Q92692 538 aa13.14□□□□□ -0.31
UBR4-201ENST00000375218 NAP1L5Q96NT1 182 aaPredicted RBP13.12□□□□□ -0.31
UBR4-201ENST00000375218 WRNQ14191 1432 aaPredicted RBP eCLIP13.09□□□□□ -0.31
UBR4-201ENST00000375218 URB2Q14146 1524 aaKnown RBP13.09□□□□□ -0.31
UBR4-201ENST00000375218 BRPF3Q9ULD4 1205 aa13.09□□□□□ -0.31
UBR4-201ENST00000375218 PUS7Q96PZ0 661 aaKnown RBP13.06□□□□□ -0.32
UBR4-201ENST00000375218 TARBP1Q13395 1621 aaKnown RBP13.05□□□□□ -0.32
UBR4-201ENST00000375218 ZNF526Q8TF50 670 aaPredicted RBP13.04□□□□□ -0.32
UBR4-201ENST00000375218 BCCIPQ9P287 314 aaKnown RBP eCLIP13.04□□□□□ -0.32
UBR4-201ENST00000375218 ZNF592Q92610 1267 aa13.04□□□□□ -0.32
UBR4-201ENST00000375218 ZNF326Q5BKZ1 582 aaKnown RBP13.03□□□□□ -0.32
UBR4-201ENST00000375218 ZFP91Q96JP5 570 aaPredicted RBP13.02□□□□□ -0.32
UBR4-201ENST00000375218 CADPSQ9ULU8 1353 aa13.02□□□□□ -0.33
UBR4-201ENST00000375218 LRRIQ1Q96JM4 1722 aa13.01□□□□□ -0.33
UBR4-201ENST00000375218 KIF21BO75037 1637 aa13□□□□□ -0.33
UBR4-201ENST00000375218 ZBTB4Q9P1Z0 1013 aaPredicted RBP13□□□□□ -0.33
UBR4-201ENST00000375218 RBM25P49756 843 aaKnown RBP12.99□□□□□ -0.33
UBR4-201ENST00000375218 LAMC3Q9Y6N6 1575 aa12.99□□□□□ -0.33
UBR4-201ENST00000375218 RAD21O60216 631 aa12.99□□□□□ -0.33
UBR4-201ENST00000375218 RAPGEF2Q9Y4G8 1499 aa12.99□□□□□ -0.33
UBR4-201ENST00000375218 THOC2Q8NI27 1593 aaKnown RBP12.98□□□□□ -0.33
UBR4-201ENST00000375218 USP35Q9P2H5 1018 aa12.98□□□□□ -0.33
UBR4-201ENST00000375218 ARID3CA6NKF2 412 aa12.98□□□□□ -0.33
UBR4-201ENST00000375218 ABCA5Q8WWZ7 1642 aa12.97□□□□□ -0.33
UBR4-201ENST00000375218 SCAF1Q9H7N4 1312 aaKnown RBP12.97□□□□□ -0.33
UBR4-201ENST00000375218 PRXQ9BXM0 1461 aa12.96□□□□□ -0.33
UBR4-201ENST00000375218 RSPH4AQ5TD94 716 aa12.96□□□□□ -0.33
UBR4-201ENST00000375218 FANCD2Q9BXW9 1451 aa12.95□□□□□ -0.34
UBR4-201ENST00000375218 TOPBP1Q92547 1522 aa12.95□□□□□ -0.34
UBR4-201ENST00000375218 FOXD4L5Q5VV16 416 aaPredicted RBP12.95□□□□□ -0.34
UBR4-201ENST00000375218 FOXD4L4Q8WXT5 416 aaPredicted RBP12.95□□□□□ -0.34
UBR4-201ENST00000375218 CWC22Q9HCG8 908 aaKnown RBP12.95□□□□□ -0.34
UBR4-201ENST00000375218 TRIM41Q8WV44 630 aa12.95□□□□□ -0.34
UBR4-201ENST00000375218 FGD5Q6ZNL6 1462 aa12.94□□□□□ -0.34
UBR4-201ENST00000375218 RAD54L2Q9Y4B4 1467 aa12.94□□□□□ -0.34
UBR4-201ENST00000375218 KCTD17Q8N5Z5 321 aa12.94□□□□□ -0.34
UBR4-201ENST00000375218 CUX2O14529 1486 aa12.94□□□□□ -0.34
UBR4-201ENST00000375218 PRDM10Q9NQV6 1147 aa12.94□□□□□ -0.34
UBR4-201ENST00000375218 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.94□□□□□ -0.34
UBR4-201ENST00000375218 POLA1P09884 1462 aaPredicted RBP12.94□□□□□ -0.34
UBR4-201ENST00000375218 AAMPQ13685 434 aa12.93□□□□□ -0.34
UBR4-201ENST00000375218 DNMBPQ6XZF7 1577 aa12.93□□□□□ -0.34
UBR4-201ENST00000375218 C1orf115Q9H7X2 142 aa12.91□□□□□ -0.34
UBR4-201ENST00000375218 ARID4BQ4LE39 1312 aaPredicted RBP12.91□□□□□ -0.34
UBR4-201ENST00000375218 TMED8Q6PL24 325 aaPredicted RBP12.9□□□□□ -0.34
UBR4-201ENST00000375218 PPM1GO15355 546 aaPredicted RBP12.87□□□□□ -0.35
UBR4-201ENST00000375218 PSMD1Q99460 953 aa12.86□□□□□ -0.35
UBR4-201ENST00000375218 MTMR7Q9Y216 660 aa12.86□□□□□ -0.35
UBR4-201ENST00000375218 PBRM1Q86U86 1689 aa12.84□□□□□ -0.35
UBR4-201ENST00000375218 CLSPNQ9HAW4 1339 aa12.84□□□□□ -0.35
UBR4-201ENST00000375218 NPM1P06748 294 aaKnown RBP eCLIP12.84□□□□□ -0.35
UBR4-201ENST00000375218 TICAM2Q86XR7 235 aa12.84□□□□□ -0.35
UBR4-201ENST00000375218 ANP32EQ9BTT0 268 aa12.83□□□□□ -0.36
UBR4-201ENST00000375218 ABCA10Q8WWZ4 1543 aa12.83□□□□□ -0.36
UBR4-201ENST00000375218 WDR62O43379 1518 aa12.82□□□□□ -0.36
UBR4-201ENST00000375218 RBM10P98175 930 aaKnown RBP12.82□□□□□ -0.36
UBR4-201ENST00000375218 BRPF1P55201 1214 aaPredicted RBP12.81□□□□□ -0.36
UBR4-201ENST00000375218 ZNF692Q9BU19 519 aaPredicted RBP12.81□□□□□ -0.36
UBR4-201ENST00000375218 CERS3Q8IU89 383 aa12.81□□□□□ -0.36
UBR4-201ENST00000375218 IGF1RP08069 1367 aa12.8□□□□□ -0.36
UBR4-201ENST00000375218 ARAP1Q96P48 1450 aa12.8□□□□□ -0.36
UBR4-201ENST00000375218 RSPH6AQ9H0K4 717 aa12.8□□□□□ -0.36
UBR4-201ENST00000375218 ZNF608Q9ULD9 1512 aaPredicted RBP12.79□□□□□ -0.36
UBR4-201ENST00000375218 ERICH3Q5RHP9 1530 aa12.78□□□□□ -0.36
UBR4-201ENST00000375218 PIAS4Q8N2W9 510 aaPredicted RBP12.77□□□□□ -0.37
UBR4-201ENST00000375218 AEBP1Q8IUX7 1158 aa12.77□□□□□ -0.37
UBR4-201ENST00000375218 NCLP19338 710 aaKnown RBP12.76□□□□□ -0.37
UBR4-201ENST00000375218 CEP162Q5TB80 1403 aa12.76□□□□□ -0.37
UBR4-201ENST00000375218 SALL2Q9Y467 1007 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms