RNA–Protein interactions for RNA: ENST00000357207.8

TRAPPC11-202, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best) BASIC

Gene TRAPPC11, Length 4,435 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-202ENST00000357207 SIN3AQ96ST3 1273 aa20.79■□□□□ 0.92
TRAPPC11-202ENST00000357207 RB1CC1Q8TDY2 1594 aa20.77■□□□□ 0.91
TRAPPC11-202ENST00000357207 PPP4R2Q9NY27 417 aa20.77■□□□□ 0.91
TRAPPC11-202ENST00000357207 TSPY4P0CV99 314 aa20.75■□□□□ 0.91
TRAPPC11-202ENST00000357207 TSPY10P0CW01 314 aa20.75■□□□□ 0.91
TRAPPC11-202ENST00000357207 GLIPR1L2Q4G1C9 344 aa20.75■□□□□ 0.91
TRAPPC11-202ENST00000357207 SLC24A1O60721 1099 aa20.74■□□□□ 0.91
TRAPPC11-202ENST00000357207 DDRGK1Q96HY6 314 aa20.71■□□□□ 0.91
TRAPPC11-202ENST00000357207 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.71■□□□□ 0.91
TRAPPC11-202ENST00000357207 ARXQ96QS3 562 aa20.7■□□□□ 0.9
TRAPPC11-202ENST00000357207 CHGAP10645 457 aaKnown RBP20.69■□□□□ 0.9
TRAPPC11-202ENST00000357207 SENP3-EIF4A1A0A087X0R7 540 aa20.66■□□□□ 0.9
TRAPPC11-202ENST00000357207 CCNB3Q8WWL7 1395 aa20.65■□□□□ 0.9
TRAPPC11-202ENST00000357207 TIMELESSQ9UNS1 1208 aa20.64■□□□□ 0.89
TRAPPC11-202ENST00000357207 RBM19Q9Y4C8 960 aaKnown RBP20.64■□□□□ 0.89
TRAPPC11-202ENST00000357207 KIF27Q86VH2 1401 aa20.63■□□□□ 0.89
TRAPPC11-202ENST00000357207 SOGA1O94964 1423 aa20.63■□□□□ 0.89
TRAPPC11-202ENST00000357207 CCER2I3L3R5 266 aa20.62■□□□□ 0.89
TRAPPC11-202ENST00000357207 PPM1GO15355 546 aaPredicted RBP20.62■□□□□ 0.89
TRAPPC11-202ENST00000357207 NOP58Q9Y2X3 529 aaKnown RBP20.61■□□□□ 0.89
TRAPPC11-202ENST00000357207 B4GALNT3Q6L9W6 998 aa20.61■□□□□ 0.89
TRAPPC11-202ENST00000357207 BECN1Q14457 450 aa20.59■□□□□ 0.89
TRAPPC11-202ENST00000357207 CECR2Q9BXF3 1484 aa20.59■□□□□ 0.89
TRAPPC11-202ENST00000357207 VPS8Q8N3P4 1428 aa20.54■□□□□ 0.88
TRAPPC11-202ENST00000357207 TSHZ2Q9NRE2 1034 aa20.53■□□□□ 0.88
TRAPPC11-202ENST00000357207 LAS1LQ9Y4W2 734 aaKnown RBP20.51■□□□□ 0.87
TRAPPC11-202ENST00000357207 CARD11Q9BXL7 1154 aa20.51■□□□□ 0.87
TRAPPC11-202ENST00000357207 BAZ1AQ9NRL2 1556 aaPredicted RBP20.5■□□□□ 0.87
TRAPPC11-202ENST00000357207 RGL3Q3MIN7 710 aa20.5■□□□□ 0.87
TRAPPC11-202ENST00000357207 NACADO15069 1562 aa20.49■□□□□ 0.87
TRAPPC11-202ENST00000357207 BAZ1BQ9UIG0 1483 aaKnown RBP20.46■□□□□ 0.87
TRAPPC11-202ENST00000357207 ERICH6BQ5W0A0 696 aa20.44■□□□□ 0.86
TRAPPC11-202ENST00000357207 KANK4Q5T7N3 995 aaPredicted RBP20.44■□□□□ 0.86
TRAPPC11-202ENST00000357207 DEKP35659 375 aaKnown RBP20.44■□□□□ 0.86
TRAPPC11-202ENST00000357207 SETD5Q9C0A6 1442 aa20.44■□□□□ 0.86
TRAPPC11-202ENST00000357207 STAG3Q9UJ98 1225 aa20.43■□□□□ 0.86
TRAPPC11-202ENST00000357207 RTN4Q9NQC3 1192 aaKnown RBP20.43■□□□□ 0.86
TRAPPC11-202ENST00000357207 CFDP1Q9UEE9 299 aaPredicted RBP20.43■□□□□ 0.86
TRAPPC11-202ENST00000357207 TRIM44Q96DX7 344 aaPredicted RBP20.42■□□□□ 0.86
TRAPPC11-202ENST00000357207 KNSTRNQ9Y448 316 aa20.42■□□□□ 0.86
TRAPPC11-202ENST00000357207 FHAD1B1AJZ9 1412 aa20.41■□□□□ 0.86
TRAPPC11-202ENST00000357207 PLEKHD1A6NEE1 506 aa20.41■□□□□ 0.86
TRAPPC11-202ENST00000357207 CHMP7Q8WUX9 453 aaPredicted RBP20.4■□□□□ 0.86
TRAPPC11-202ENST00000357207 RGS3P49796 1198 aa20.39■□□□□ 0.85
TRAPPC11-202ENST00000357207 CCDC88BA6NC98 1476 aa20.39■□□□□ 0.85
TRAPPC11-202ENST00000357207 CDCA8Q53HL2 280 aa20.39■□□□□ 0.85
TRAPPC11-202ENST00000357207 MYH16Q9H6N6 1097 aa20.39■□□□□ 0.85
TRAPPC11-202ENST00000357207 HSPA5P11021 654 aaKnown RBP20.36■□□□□ 0.85
TRAPPC11-202ENST00000357207 GOLGA6L22H0YM25 854 aa20.35■□□□□ 0.85
TRAPPC11-202ENST00000357207 RAB3GAP2Q9H2M9 1393 aa20.34■□□□□ 0.85
TRAPPC11-202ENST00000357207 ABCC8Q09428 1581 aa20.33■□□□□ 0.85
TRAPPC11-202ENST00000357207 MROH2BQ7Z745 1585 aa20.33■□□□□ 0.85
TRAPPC11-202ENST00000357207 PPP1R15AO75807 674 aaPredicted RBP20.32■□□□□ 0.84
TRAPPC11-202ENST00000357207 ESF1Q9H501 851 aaKnown RBP20.32■□□□□ 0.84
TRAPPC11-202ENST00000357207 CARMIL1Q5VZK9 1371 aa20.3■□□□□ 0.84
TRAPPC11-202ENST00000357207 CFAP53Q96M91 514 aa20.3■□□□□ 0.84
TRAPPC11-202ENST00000357207 NPM1P06748 294 aaKnown RBP eCLIP20.29■□□□□ 0.84
TRAPPC11-202ENST00000357207 NEUROD2Q15784 382 aa20.27■□□□□ 0.84
TRAPPC11-202ENST00000357207 CC2D1BQ5T0F9 858 aaKnown RBP20.26■□□□□ 0.83
TRAPPC11-202ENST00000357207 FTSJ3Q8IY81 847 aaKnown RBP20.25■□□□□ 0.83
TRAPPC11-202ENST00000357207 FRAT1Q92837 279 aaPredicted RBP20.23■□□□□ 0.83
TRAPPC11-202ENST00000357207 KCNH8Q96L42 1107 aa20.22■□□□□ 0.83
TRAPPC11-202ENST00000357207 NCLP19338 710 aaKnown RBP20.22■□□□□ 0.83
TRAPPC11-202ENST00000357207 CUX2O14529 1486 aa20.21■□□□□ 0.83
TRAPPC11-202ENST00000357207 DCAF11Q8TEB1 546 aa20.21■□□□□ 0.83
TRAPPC11-202ENST00000357207 ARHGAP35Q9NRY4 1499 aa20.2■□□□□ 0.82
TRAPPC11-202ENST00000357207 NAP1L5Q96NT1 182 aaPredicted RBP20.2■□□□□ 0.82
TRAPPC11-202ENST00000357207 DHX57Q6P158 1386 aaKnown RBP20.17■□□□□ 0.82
TRAPPC11-202ENST00000357207 TCERG1O14776 1098 aaKnown RBP20.17■□□□□ 0.82
TRAPPC11-202ENST00000357207 TMF1P82094 1093 aa20.16■□□□□ 0.82
TRAPPC11-202ENST00000357207 RCAN3Q9UKA8 241 aa20.15■□□□□ 0.82
TRAPPC11-202ENST00000357207 FOXD1Q16676 465 aa20.13■□□□□ 0.81
TRAPPC11-202ENST00000357207 PTMAP06454 111 aaKnown RBP20.12■□□□□ 0.81
TRAPPC11-202ENST00000357207 IPO9Q96P70 1041 aaKnown RBP20.12■□□□□ 0.81
TRAPPC11-202ENST00000357207 MS4A1P11836 297 aa20.11■□□□□ 0.81
TRAPPC11-202ENST00000357207 MPHOSPH9Q99550 1183 aa20.11■□□□□ 0.81
TRAPPC11-202ENST00000357207 NUDCQ9Y266 331 aa20.11■□□□□ 0.81
TRAPPC11-202ENST00000357207 MAPK8IP3Q9UPT6 1336 aa20.1■□□□□ 0.81
TRAPPC11-202ENST00000357207 SENP3Q9H4L4 574 aaPredicted RBP20.1■□□□□ 0.81
TRAPPC11-202ENST00000357207 TNNT2P45379 298 aaPredicted RBP20.08■□□□□ 0.81
TRAPPC11-202ENST00000357207 PKD2Q13563 968 aa20.08■□□□□ 0.81
TRAPPC11-202ENST00000357207 L1TD1Q5T7N2 865 aaKnown RBP20.08■□□□□ 0.8
TRAPPC11-202ENST00000357207 CASC1Q6TDU7 716 aa20.07■□□□□ 0.8
TRAPPC11-202ENST00000357207 HSP90AB1P08238 724 aaKnown RBP20.06■□□□□ 0.8
TRAPPC11-202ENST00000357207 L3MBTL2Q969R5 705 aa20.06■□□□□ 0.8
TRAPPC11-202ENST00000357207 KTN1Q86UP2 1357 aaKnown RBP20.06■□□□□ 0.8
TRAPPC11-202ENST00000357207 RALBP1Q15311 655 aa20.06■□□□□ 0.8
TRAPPC11-202ENST00000357207 DNTTIP2Q5QJE6 756 aaKnown RBP20.06■□□□□ 0.8
TRAPPC11-202ENST00000357207 CHMP4BQ9H444 224 aaKnown RBP20.04■□□□□ 0.8
TRAPPC11-202ENST00000357207 FMN1Q68DA7 1419 aa20.03■□□□□ 0.8
TRAPPC11-202ENST00000357207 HSCBQ8IWL3 235 aa20.02■□□□□ 0.8
TRAPPC11-202ENST00000357207 RAPGEF2Q9Y4G8 1499 aa20.01■□□□□ 0.79
TRAPPC11-202ENST00000357207 WIZO95785 1651 aa20■□□□□ 0.79
TRAPPC11-202ENST00000357207 U2SURPO15042 1029 aaKnown RBP19.99■□□□□ 0.79
TRAPPC11-202ENST00000357207 PLPPR3Q6T4P5 718 aa19.98■□□□□ 0.79
TRAPPC11-202ENST00000357207 RUSC2Q8N2Y8 1516 aa19.97■□□□□ 0.79
TRAPPC11-202ENST00000357207 TOP2AP11388 1531 aaKnown RBP19.96■□□□□ 0.79
TRAPPC11-202ENST00000357207 SPRYD3Q8NCJ5 442 aa19.96■□□□□ 0.79
TRAPPC11-202ENST00000357207 FANCIQ9NVI1 1328 aa19.95■□□□□ 0.78
TRAPPC11-202ENST00000357207 PDE3BQ13370 1112 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms